Wall clock time and date at job start Tue Mar 31 2020 13:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.36933 * 119.99986 * 264.06276 * 3 2 1 5 5 H 1.08001 * 120.00026 * 189.25388 * 4 3 2 6 6 C 1.38814 * 120.00497 * 9.25380 * 4 3 2 7 7 N 1.31626 * 119.99454 * 23.82072 * 6 4 3 8 8 Si 1.86799 * 120.00523 * 203.82057 * 6 4 3 9 9 H 1.48504 * 109.46661 * 84.97926 * 8 6 4 10 10 H 1.48493 * 109.47272 * 204.98186 * 8 6 4 11 11 H 1.48499 * 109.46906 * 324.98197 * 8 6 4 12 12 C 1.46501 * 120.00023 * 84.05305 * 3 2 1 13 13 C 1.50697 * 109.47575 * 270.00396 * 12 3 2 14 14 C 1.35113 * 126.40981 * 94.99848 * 13 12 3 15 15 N 1.33503 * 108.62292 * 179.97438 * 14 13 12 16 16 C 1.32566 * 109.15877 * 0.02562 * 15 14 13 17 17 C 1.40934 * 132.31480 * 179.97438 * 16 15 14 18 18 C 1.36019 * 119.34802 * 180.02562 * 17 16 15 19 19 C 1.40529 * 119.68775 * 0.02562 * 18 17 16 20 20 Br 1.89103 * 119.86142 * 180.02562 * 19 18 17 21 21 C 1.35036 * 120.27849 * 359.97438 * 19 18 17 22 22 N 1.36507 * 120.59855 * 0.02562 * 21 19 18 23 23 H 1.08996 * 109.47528 * 299.99970 * 1 2 3 24 24 H 1.08998 * 109.47329 * 60.00343 * 1 2 3 25 25 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47018 * 240.00588 * 2 1 3 27 27 H 1.08998 * 109.47329 * 119.99657 * 2 1 3 28 28 H 0.96995 * 119.99728 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47058 * 150.00109 * 12 3 2 30 30 H 1.09003 * 109.46876 * 30.00874 * 12 3 2 31 31 H 1.08005 * 125.68710 * 0.02562 * 14 13 12 32 32 H 1.07997 * 120.32673 * 0.05322 * 17 16 15 33 33 H 1.07999 * 120.15827 * 180.29726 * 18 17 16 34 34 H 1.08007 * 119.69543 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3621 1.9859 -1.1795 5 1 2.8603 2.9441 -1.1700 6 6 2.0706 1.3673 -2.3875 7 7 1.0951 0.4863 -2.4571 8 14 3.0624 1.7850 -3.9143 9 1 4.2926 0.9538 -3.9480 10 1 2.2468 1.5115 -5.1246 11 1 3.4365 3.2218 -3.8837 12 6 2.1385 2.1157 1.2619 13 6 0.8474 2.8385 1.5475 14 6 -0.1682 2.3917 2.3185 15 7 -1.1339 3.3135 2.3277 16 6 -0.7607 4.3420 1.5793 17 6 -1.3937 5.5588 1.2553 18 6 -0.7572 6.4462 0.4445 19 6 0.5186 6.1387 -0.0581 20 35 1.4083 7.3692 -1.1852 21 6 1.1123 4.9687 0.2612 22 7 0.4840 4.0697 1.0740 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8915 0.0538 -3.3010 29 1 2.9505 2.8388 1.1855 30 1 2.3500 1.4162 2.0707 31 1 -0.1942 1.4467 2.8408 32 1 -2.3744 5.7846 1.6473 33 1 -1.2282 7.3847 0.1916 34 1 2.0932 4.7422 -0.1300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:16 Heat of formation + Delta-G solvation = 123.571455 kcal Electronic energy + Delta-G solvation = -19826.125773 eV Core-core repulsion = 16807.871930 eV Total energy + Delta-G solvation = -3018.253843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.033 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37788 -37.27178 -36.12448 -33.39265 -31.91142 -31.50300 -29.85997 -28.75017 -28.37012 -25.59164 -23.70321 -22.82948 -22.00653 -20.94385 -20.21613 -17.09671 -16.84018 -16.40420 -15.66124 -15.55109 -14.92923 -14.39378 -13.73578 -13.54380 -13.38937 -13.23805 -12.30914 -12.27526 -12.03548 -11.92601 -11.57898 -11.46841 -10.92702 -10.82676 -10.73422 -10.56586 -10.31713 -10.29386 -10.13851 -9.85189 -9.64064 -9.47982 -8.53284 -8.27640 -7.37225 -7.04204 -5.90801 -3.24252 0.94399 1.48505 1.51217 3.07187 3.27860 3.30582 3.38438 3.39350 3.81009 4.38727 4.52362 4.78120 4.91704 5.14949 5.28324 5.42879 5.45027 5.72496 5.79980 5.87799 6.01470 6.13931 6.29953 6.45824 6.52908 6.81371 6.88420 7.03693 7.07278 7.11205 7.42404 7.48822 7.69275 8.05916 8.20850 8.27827 9.07493 9.68059 10.12927 11.10842 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.006900 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.618369 B = 4057.109259 C = 5914.891149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.070 0.930 6 C 0.005 3.995 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.211 3.789 13 C -0.031 4.031 14 C 0.018 3.982 15 N -0.488 5.488 16 C 0.199 3.801 17 C -0.071 4.071 18 C -0.094 4.094 19 C -0.139 4.139 20 Br -0.030 7.030 21 C 0.136 3.864 22 N -0.350 5.350 23 H 0.021 0.979 24 H 0.085 0.915 25 H 0.018 0.982 26 H 0.089 0.911 27 H 0.007 0.993 28 H 0.254 0.746 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 11.438 5.541 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.088 0.912 6 C -0.194 4.194 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.081 3.919 13 C -0.147 4.147 14 C -0.132 4.132 15 N -0.207 5.207 16 C -0.045 4.045 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.222 4.222 20 Br 0.054 6.946 21 C 0.010 3.990 22 N -0.023 5.023 23 H 0.040 0.960 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.107 0.893 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.325 11.595 5.387 12.790 hybrid contribution 0.692 -0.083 -1.255 1.435 sum 0.367 11.512 4.132 12.237 Atomic orbital electron populations 1.22365 0.98983 0.98252 1.01675 1.20879 0.92687 0.83825 0.98435 1.44535 1.74380 1.09901 1.01329 1.19173 1.31486 1.04651 0.83530 0.91184 1.24782 0.97417 0.99658 0.97497 1.70176 1.26675 1.30957 1.25132 0.86376 0.80138 0.78166 0.82659 1.21271 1.21765 1.20439 1.19525 0.88694 0.93402 0.90268 1.23467 1.04748 0.84893 1.01640 1.22111 0.89985 0.99337 1.01769 1.70618 1.28419 1.00867 1.20827 1.20869 0.85624 0.97813 1.00160 1.20076 1.00344 0.89745 0.99001 1.20709 0.92959 1.00378 0.97814 1.20874 0.98568 0.96434 1.06334 1.96689 1.77393 1.56670 1.63890 1.21514 0.98833 0.87310 0.91342 1.42701 1.14916 1.13630 1.31065 0.95986 0.89584 0.96279 0.89337 0.97499 0.93526 0.92792 0.90858 0.80953 0.83241 0.83990 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.57 37.16 0.36 -3.17 16 2 C 0.17 3.80 5.64 -4.04 -0.02 3.78 16 3 N -0.58 -13.30 2.52 -174.61 -0.44 -13.74 16 4 C -0.26 -6.48 9.71 -15.06 -0.15 -6.63 16 5 H 0.07 1.70 7.22 -52.49 -0.38 1.32 16 6 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 7 N -0.89 -23.93 8.52 55.49 0.47 -23.46 16 8 Si 0.90 20.76 29.62 -169.99 -5.03 15.73 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.21 3.99 6.13 -5.19 -0.03 3.96 16 13 C -0.03 -0.60 6.20 -81.47 -0.51 -1.10 16 14 C 0.02 0.34 9.78 -17.94 -0.18 0.17 16 15 N -0.49 -9.64 11.32 -12.78 -0.14 -9.78 16 16 C 0.20 3.71 7.81 -156.04 -1.22 2.49 16 17 C -0.07 -1.06 10.11 -39.36 -0.40 -1.46 16 18 C -0.09 -1.28 9.82 -39.52 -0.39 -1.66 16 19 C -0.14 -2.10 6.19 -39.86 -0.25 -2.35 16 20 Br -0.03 -0.40 33.68 -68.01 -2.29 -2.69 16 21 C 0.14 2.36 10.56 -16.61 -0.18 2.18 16 22 N -0.35 -6.63 2.95 -58.43 -0.17 -6.81 16 23 H 0.02 0.47 5.40 -51.93 -0.28 0.19 16 24 H 0.09 2.31 6.28 -51.93 -0.33 1.98 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 2.26 5.88 -51.93 -0.31 1.96 16 27 H 0.01 0.14 7.98 -51.93 -0.41 -0.27 16 28 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 30 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 31 H 0.17 2.86 7.83 -52.48 -0.41 2.45 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.17 2.89 7.36 -52.48 -0.39 2.51 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -28.43 302.82 -9.82 -38.25 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.73 Total: 1.68 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.04 Total: -3.74 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.28 Total: -53.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.43 -9.82 -38.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.823 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds