Wall clock time and date at job start Tue Mar 31 2020 13:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.36933 * 119.99986 * 264.06276 * 3 2 1 5 5 H 1.08001 * 120.00026 * 189.25388 * 4 3 2 6 6 C 1.38814 * 120.00497 * 9.25380 * 4 3 2 7 7 N 1.31626 * 119.99454 * 23.82072 * 6 4 3 8 8 Si 1.86799 * 120.00523 * 203.82057 * 6 4 3 9 9 H 1.48504 * 109.46661 * 84.97926 * 8 6 4 10 10 H 1.48493 * 109.47272 * 204.98186 * 8 6 4 11 11 H 1.48499 * 109.46906 * 324.98197 * 8 6 4 12 12 C 1.46501 * 120.00023 * 84.05305 * 3 2 1 13 13 C 1.50697 * 109.47575 * 270.00396 * 12 3 2 14 14 C 1.35113 * 126.40981 * 94.99848 * 13 12 3 15 15 N 1.33503 * 108.62292 * 179.97438 * 14 13 12 16 16 C 1.32566 * 109.15877 * 0.02562 * 15 14 13 17 17 C 1.40934 * 132.31480 * 179.97438 * 16 15 14 18 18 C 1.36019 * 119.34802 * 180.02562 * 17 16 15 19 19 C 1.40529 * 119.68775 * 0.02562 * 18 17 16 20 20 Br 1.89103 * 119.86142 * 180.02562 * 19 18 17 21 21 C 1.35036 * 120.27849 * 359.97438 * 19 18 17 22 22 N 1.36507 * 120.59855 * 0.02562 * 21 19 18 23 23 H 1.08996 * 109.47528 * 299.99970 * 1 2 3 24 24 H 1.08998 * 109.47329 * 60.00343 * 1 2 3 25 25 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47018 * 240.00588 * 2 1 3 27 27 H 1.08998 * 109.47329 * 119.99657 * 2 1 3 28 28 H 0.96995 * 119.99728 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47058 * 150.00109 * 12 3 2 30 30 H 1.09003 * 109.46876 * 30.00874 * 12 3 2 31 31 H 1.08005 * 125.68710 * 0.02562 * 14 13 12 32 32 H 1.07997 * 120.32673 * 0.05322 * 17 16 15 33 33 H 1.07999 * 120.15827 * 180.29726 * 18 17 16 34 34 H 1.08007 * 119.69543 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3621 1.9859 -1.1795 5 1 2.8603 2.9441 -1.1700 6 6 2.0706 1.3673 -2.3875 7 7 1.0951 0.4863 -2.4571 8 14 3.0624 1.7850 -3.9143 9 1 4.2926 0.9538 -3.9480 10 1 2.2468 1.5115 -5.1246 11 1 3.4365 3.2218 -3.8837 12 6 2.1385 2.1157 1.2619 13 6 0.8474 2.8385 1.5475 14 6 -0.1682 2.3917 2.3185 15 7 -1.1339 3.3135 2.3277 16 6 -0.7607 4.3420 1.5793 17 6 -1.3937 5.5588 1.2553 18 6 -0.7572 6.4462 0.4445 19 6 0.5186 6.1387 -0.0581 20 35 1.4083 7.3692 -1.1852 21 6 1.1123 4.9687 0.2612 22 7 0.4840 4.0697 1.0740 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8915 0.0538 -3.3010 29 1 2.9505 2.8388 1.1855 30 1 2.3500 1.4162 2.0707 31 1 -0.1942 1.4467 2.8408 32 1 -2.3744 5.7846 1.6473 33 1 -1.2282 7.3847 0.1916 34 1 2.0932 4.7422 -0.1300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:15 Heat of formation + Delta-G solvation = 109.953940 kcal Electronic energy + Delta-G solvation = -19826.716273 eV Core-core repulsion = 16807.871930 eV Total energy + Delta-G solvation = -3018.844343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.033 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.74735 -38.59867 -37.82065 -34.76439 -33.50614 -32.89829 -31.56167 -30.25437 -29.73279 -27.18731 -25.32683 -24.27417 -23.36962 -22.57350 -21.78357 -18.67139 -18.47570 -17.68750 -17.18159 -16.86454 -16.53250 -15.71597 -15.53861 -15.21789 -14.92125 -14.62592 -13.76810 -13.66225 -13.53848 -13.50196 -13.20012 -12.83199 -12.75825 -12.52882 -12.41488 -12.08720 -11.95507 -11.77999 -11.43384 -11.42428 -11.26285 -11.10360 -10.40563 -9.62009 -8.96421 -8.66109 -7.83038 -5.16940 -0.32349 0.20703 0.30935 1.45378 1.49081 1.54111 1.73726 1.90538 2.48367 2.52301 3.24869 3.28148 3.52646 3.68145 3.74191 3.96219 4.22551 4.27539 4.43722 4.59563 4.74701 4.83688 4.84643 4.95440 5.06068 5.18647 5.21333 5.28419 5.48469 5.55472 5.70207 5.81195 6.06401 6.14886 6.32101 6.87077 7.17231 7.86417 8.27051 9.17110 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.006900 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.618369 B = 4057.109259 C = 5914.891149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 N -0.596 5.596 4 C -0.253 4.253 5 H 0.073 0.927 6 C -0.045 4.045 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.271 1.271 12 C 0.213 3.787 13 C -0.053 4.053 14 C 0.016 3.984 15 N -0.515 5.515 16 C 0.187 3.813 17 C -0.078 4.078 18 C -0.079 4.079 19 C -0.130 4.130 20 Br -0.008 7.008 21 C 0.106 3.894 22 N -0.357 5.357 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.244 0.756 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.190 0.810 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 13.315 6.220 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 N -0.316 5.316 4 C -0.382 4.382 5 H 0.091 0.909 6 C -0.241 4.241 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.195 1.195 12 C 0.085 3.915 13 C -0.169 4.169 14 C -0.134 4.134 15 N -0.236 5.236 16 C -0.056 4.056 17 C -0.099 4.099 18 C -0.103 4.103 19 C -0.213 4.213 20 Br 0.076 6.924 21 C -0.020 4.020 22 N -0.030 5.030 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.207 0.793 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.399 13.511 6.091 14.826 hybrid contribution 0.714 -0.469 -1.396 1.636 sum 0.315 13.043 4.695 13.865 Atomic orbital electron populations 1.22159 0.99198 0.98318 0.99989 1.20739 0.92412 0.84149 0.98174 1.44607 1.74725 1.10270 1.01965 1.19402 1.30216 1.04267 0.84354 0.90882 1.25344 0.98501 1.00599 0.99636 1.70345 1.28111 1.32581 1.24758 0.85576 0.78667 0.78185 0.79904 1.21451 1.23097 1.19543 1.19614 0.88759 0.93841 0.89272 1.23280 1.04766 0.85782 1.03068 1.22430 0.89631 0.99766 1.01619 1.70612 1.29092 1.01673 1.22206 1.21540 0.85594 0.98695 0.99760 1.20533 1.01558 0.88551 0.99235 1.21172 0.91906 1.01288 0.95981 1.21243 0.99021 0.95844 1.05191 1.96726 1.77217 1.55330 1.63103 1.21637 0.99300 0.88311 0.92786 1.42784 1.15191 1.13803 1.31187 0.95040 0.93599 0.95317 0.92369 0.94760 0.94618 0.92112 0.88414 0.79346 0.80336 0.80124 0.81945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 9.57 71.98 0.69 -5.62 16 2 C 0.17 7.74 5.64 86.38 0.49 8.23 16 3 N -0.60 -26.97 2.52 -706.34 -1.78 -28.75 16 4 C -0.25 -12.62 9.71 84.03 0.82 -11.80 16 5 H 0.07 3.52 7.22 -2.91 -0.02 3.50 16 6 C -0.05 -2.37 4.92 84.86 0.42 -1.95 16 7 N -0.91 -50.61 8.52 21.65 0.18 -50.43 16 8 Si 0.95 43.19 29.62 68.60 2.03 45.22 16 9 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 C 0.21 7.84 6.13 85.63 0.53 8.37 16 13 C -0.05 -2.00 6.20 41.06 0.25 -1.75 16 14 C 0.02 0.57 9.78 83.72 0.82 1.39 16 15 N -0.52 -19.90 11.32 -194.35 -2.20 -22.10 16 16 C 0.19 6.76 7.81 134.11 1.05 7.80 16 17 C -0.08 -2.13 10.11 22.41 0.23 -1.90 16 18 C -0.08 -1.88 9.82 22.31 0.22 -1.67 16 19 C -0.13 -3.63 6.19 22.09 0.14 -3.50 16 20 Br -0.01 -0.19 33.68 -20.37 -0.69 -0.88 16 21 C 0.11 3.54 10.56 83.23 0.88 4.42 16 22 N -0.36 -13.22 2.95 -338.79 -1.00 -14.22 16 23 H 0.03 1.34 5.40 -2.39 -0.01 1.33 16 24 H 0.05 2.50 6.28 -2.39 -0.01 2.48 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 3.02 5.88 -2.39 -0.01 3.01 16 27 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 28 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 30 H 0.10 3.06 7.95 -2.39 -0.02 3.04 16 31 H 0.19 6.02 7.83 -2.91 -0.02 6.00 16 32 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.16 5.52 7.36 -2.91 -0.02 5.50 16 Total: -1.00 -61.56 302.82 4.18 -57.37 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.12 Total: 11.77 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.52 Total: 2.02 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -4.80 Total: -115.50 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.88 kcal Total: -61.56 4.18 -57.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.325 kcal (2) G-P(sol) polarization free energy of solvation -61.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds