Wall clock time and date at job start Tue Mar 31 2020 13:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35970 * 119.75350 * 2 1 4 4 C 1.38918 * 120.68840 * 180.02562 * 3 2 1 5 5 C 1.37437 * 120.18341 * 0.02562 * 4 3 2 6 6 C 1.39860 * 120.17733 * 359.97438 * 5 4 3 7 7 S 1.75990 * 130.55319 * 180.02562 * 6 5 4 8 8 C 1.75477 * 91.64922 * 179.97438 * 7 6 5 9 9 C 1.46831 * 124.65799 * 179.97438 * 8 7 6 10 10 O 1.21667 * 119.99918 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99756 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99489 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47358 * 35.00325 * 12 11 9 14 14 C 1.52990 * 109.47385 * 275.00064 * 12 11 9 15 15 C 1.50706 * 109.46510 * 155.00012 * 12 11 9 16 16 H 1.07996 * 120.00248 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99318 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00773 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99715 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46982 * 89.99807 * 19 17 15 21 21 H 1.48500 * 109.47034 * 210.00042 * 19 17 15 22 22 H 1.48507 * 109.46960 * 329.99871 * 19 17 15 23 23 C 1.33825 * 110.68362 * 0.22614 * 8 7 6 24 24 Cl 1.73604 * 122.24233 * 179.76809 * 23 8 7 25 25 C 1.40042 * 119.85913 * 359.97438 * 6 5 4 26 26 H 1.09002 * 109.46851 * 263.43492 * 1 2 3 27 27 H 1.09006 * 109.46587 * 23.42990 * 1 2 3 28 28 H 1.08995 * 109.47090 * 143.43275 * 1 2 3 29 29 H 1.08000 * 119.65670 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.90790 * 180.02562 * 4 3 2 31 31 H 1.07994 * 119.90914 * 180.02562 * 5 4 3 32 32 H 0.96996 * 120.00105 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47086 * 300.00428 * 14 12 11 34 34 H 1.08998 * 109.47386 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.47142 * 59.99976 * 14 12 11 36 36 H 0.96996 * 120.00701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1818 1.1804 0.0000 4 6 3.5708 1.2031 -0.0005 5 6 4.2811 0.0265 -0.0016 6 6 3.6093 -1.2002 -0.0016 7 16 4.2326 -2.8460 -0.0022 8 6 2.6102 -3.5145 -0.0010 9 6 2.2982 -4.9493 -0.0013 10 8 1.1394 -5.3199 -0.0009 11 7 3.2956 -5.8557 -0.0022 12 6 2.9843 -7.2873 -0.0032 13 1 2.0844 -7.4631 -0.5926 14 6 2.7534 -7.7600 1.4334 15 6 4.1358 -8.0513 -0.6045 16 1 5.0120 -7.5233 -0.9508 17 6 4.0706 -9.4243 -0.7124 18 7 3.0040 -10.0673 -0.2902 19 14 5.4982 -10.3714 -1.4571 20 1 6.4541 -10.7495 -0.3854 21 1 4.9866 -11.5981 -2.1195 22 1 6.1888 -9.5195 -2.4585 23 6 1.6962 -2.5370 -0.0051 24 17 -0.0089 -2.8633 -0.0111 25 6 2.2092 -1.2284 0.0000 26 1 -0.3633 -0.1175 1.0210 27 1 -0.3633 0.9430 -0.4087 28 1 -0.3633 -0.8253 -0.6122 29 1 1.6322 2.1102 0.0004 30 1 4.0940 2.1480 -0.0001 31 1 5.3608 0.0493 -0.0016 32 1 4.2195 -5.5603 -0.0022 33 1 3.6533 -7.5842 2.0228 34 1 2.5222 -8.8252 1.4328 35 1 1.9206 -7.2073 1.8684 36 1 2.9579 -11.0331 -0.3665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:56 Heat of formation + Delta-G solvation = -17.401382 kcal Electronic energy + Delta-G solvation = -21849.722610 eV Core-core repulsion = 18450.243531 eV Total energy + Delta-G solvation = -3399.479079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22459 -40.47034 -37.92265 -36.82569 -35.89630 -34.41223 -33.83430 -31.63264 -30.22163 -27.88927 -27.37933 -25.74331 -24.13883 -22.70730 -21.74558 -21.23230 -19.55549 -18.43130 -17.63598 -17.43348 -16.96642 -16.64860 -16.31358 -15.99138 -15.67877 -15.32349 -15.03970 -14.49594 -14.32314 -14.27704 -13.94926 -13.74712 -13.63478 -13.19231 -13.11875 -12.97266 -12.88370 -12.73763 -12.52824 -12.32628 -12.16040 -11.85321 -11.77881 -11.42795 -11.15296 -10.78420 -10.62122 -10.51228 -9.96692 -9.65348 -8.74615 -8.20243 -6.38411 -0.92918 0.00051 0.17653 0.51072 0.73530 1.30492 1.44227 1.45230 1.55953 2.04509 2.19886 2.45470 2.60090 3.10242 3.45733 3.66889 3.81751 3.98459 4.15713 4.33331 4.45291 4.46572 4.68960 4.72230 4.75623 4.86395 4.87479 5.03178 5.09485 5.24553 5.34889 5.36638 5.49998 5.51144 5.61051 5.81822 5.86894 6.03526 6.65132 6.74650 7.19337 7.36736 8.86340 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.003510 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.343161 B = 7975.170922 C = 8985.698269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.101 4.101 6 C -0.130 4.130 7 S 0.184 5.816 8 C -0.253 4.253 9 C 0.565 3.435 10 O -0.558 6.558 11 N -0.697 5.697 12 C 0.273 3.727 13 H 0.005 0.995 14 C -0.134 4.134 15 C -0.551 4.551 16 H 0.072 0.928 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.030 3.970 24 Cl -0.021 7.021 25 C -0.114 4.114 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.399 0.601 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.012 0.988 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 26.404 1.087 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.139 4.139 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.247 4.247 7 S 0.450 5.550 8 C -0.372 4.372 9 C 0.351 3.649 10 O -0.439 6.439 11 N -0.345 5.345 12 C 0.170 3.830 13 H 0.023 0.977 14 C -0.193 4.193 15 C -0.589 4.589 16 H 0.090 0.910 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.013 4.013 24 Cl 0.008 6.992 25 C -0.121 4.121 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.183 0.817 30 H 0.194 0.806 31 H 0.175 0.825 32 H 0.234 0.766 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.394 25.098 1.101 25.350 hybrid contribution -0.937 -0.685 -0.261 1.190 sum 2.457 24.412 0.839 24.550 Atomic orbital electron populations 1.21305 0.89989 1.04648 1.03402 1.19894 0.96975 0.90645 0.96372 1.21073 0.95073 0.97597 1.00191 1.21674 0.93917 0.98710 0.94300 1.20890 1.01293 0.88641 1.01505 1.23101 0.95644 0.98935 1.07004 1.83959 1.00452 0.94682 1.75868 1.23641 0.99697 0.96990 1.16885 1.17370 0.85774 0.84346 0.77429 1.90803 1.20464 1.80856 1.51788 1.46209 1.08328 1.07731 1.72266 1.18453 0.95928 0.74910 0.93670 0.97669 1.21909 0.97774 1.02427 0.97158 1.21497 1.02926 0.92555 1.41917 0.90972 1.25795 0.98835 0.98368 0.95332 1.70041 1.29627 1.09030 1.46656 0.85314 0.78547 0.77663 0.78653 1.19449 1.21047 1.18824 1.20181 0.86890 0.92708 1.01500 1.98364 1.09779 1.95201 1.95855 1.17808 0.93001 0.91812 1.09471 0.90417 0.88479 0.91556 0.81702 0.80638 0.82461 0.76627 0.94082 0.90985 0.96843 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.86 71.24 0.63 -1.80 16 2 C -0.04 -0.73 5.91 -19.59 -0.12 -0.84 16 3 C -0.12 -1.53 9.54 21.91 0.21 -1.33 16 4 C -0.06 -0.69 10.03 22.24 0.22 -0.47 16 5 C -0.10 -1.54 10.07 22.47 0.23 -1.31 16 6 C -0.13 -3.05 6.50 23.10 0.15 -2.90 16 7 S 0.18 4.93 22.25 -56.49 -1.26 3.68 16 8 C -0.25 -9.14 6.31 23.52 0.15 -8.99 16 9 C 0.57 25.43 7.75 86.49 0.67 26.10 16 10 O -0.56 -28.88 14.40 -4.24 -0.06 -28.94 16 11 N -0.70 -31.62 5.06 -449.93 -2.28 -33.90 16 12 C 0.27 14.71 2.56 44.24 0.11 14.82 16 13 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 14 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 15 C -0.55 -29.87 8.73 25.60 0.22 -29.64 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C 0.02 0.93 5.30 84.65 0.45 1.38 16 18 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 19 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C 0.03 1.00 6.32 21.83 0.14 1.13 16 24 Cl -0.02 -0.72 23.00 -2.72 -0.06 -0.78 16 25 C -0.11 -3.02 5.83 -21.47 -0.13 -3.15 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.11 8.00 -2.38 -0.02 1.10 16 28 H 0.07 1.45 5.30 -2.39 -0.01 1.43 16 29 H 0.17 0.99 8.02 -2.91 -0.02 0.97 16 30 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.40 15.78 7.58 -92.71 -0.70 15.08 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 35 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.42 329.01 2.65 -67.77 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.43 Total: 13.88 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.61 Total: -13.35 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.04 Total: -86.60 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.94 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.26 Total: 3.68 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.06 Total: -0.78 kcal Total: -70.42 2.65 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds