Wall clock time and date at job start Tue Mar 31 2020 13:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35962 * 119.75405 * 2 1 4 4 C 1.38914 * 120.69297 * 179.97438 * 3 2 1 5 5 C 1.37441 * 120.18067 * 0.02730 * 4 3 2 6 6 C 1.39863 * 120.17991 * 359.97438 * 5 4 3 7 7 S 1.75990 * 130.55734 * 180.02562 * 6 5 4 8 8 C 1.75478 * 91.64953 * 179.97438 * 7 6 5 9 9 C 1.46829 * 124.65733 * 179.97438 * 8 7 6 10 10 O 1.21673 * 120.00047 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00197 * 0.03077 * 9 8 7 12 12 C 1.46500 * 120.00301 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46822 * 324.99790 * 12 11 9 14 14 C 1.53003 * 109.46697 * 84.99249 * 12 11 9 15 15 C 1.50694 * 109.47025 * 204.99385 * 12 11 9 16 16 H 1.07997 * 120.00362 * 359.97438 * 15 12 11 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00050 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99722 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47498 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46949 * 120.00255 * 19 17 15 22 22 H 1.48505 * 109.47033 * 240.00164 * 19 17 15 23 23 C 1.33827 * 110.68297 * 0.22648 * 8 7 6 24 24 Cl 1.73605 * 122.23785 * 179.77207 * 23 8 7 25 25 C 1.40053 * 119.85498 * 359.97438 * 6 5 4 26 26 H 1.09001 * 109.47054 * 263.42807 * 1 2 3 27 27 H 1.08997 * 109.46924 * 23.43011 * 1 2 3 28 28 H 1.09004 * 109.47003 * 143.42918 * 1 2 3 29 29 H 1.08003 * 119.65574 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.91706 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.91048 * 179.97438 * 5 4 3 32 32 H 0.97006 * 119.99446 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.46900 * 179.97438 * 14 12 11 34 34 H 1.09001 * 109.47043 * 60.00676 * 14 12 11 35 35 H 1.08990 * 109.47540 * 300.00237 * 14 12 11 36 36 H 0.96993 * 119.99567 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1817 1.1804 0.0000 4 6 3.5707 1.2031 0.0005 5 6 4.2810 0.0265 0.0005 6 6 3.6094 -1.2003 0.0005 7 16 4.2326 -2.8461 0.0010 8 6 2.6102 -3.5146 0.0013 9 6 2.2982 -4.9493 0.0013 10 8 1.1393 -5.3200 0.0010 11 7 3.2956 -5.8558 0.0017 12 6 2.9844 -7.2874 0.0022 13 1 2.0846 -7.4633 0.5917 14 6 2.7531 -7.7595 -1.4347 15 6 4.1360 -8.0515 0.6028 16 1 5.0123 -7.5237 0.9491 17 6 4.0709 -9.4246 0.7103 18 7 3.0040 -10.0674 0.2881 19 14 5.4981 -10.3718 1.4554 20 1 6.5699 -9.4228 1.8500 21 1 5.0285 -11.1132 2.6534 22 1 6.0303 -11.3325 0.4559 23 6 1.6962 -2.5370 -0.0039 24 17 -0.0089 -2.8634 -0.0110 25 6 2.2091 -1.2285 0.0010 26 1 -0.3633 -0.1176 1.0209 27 1 -0.3633 0.9429 -0.4086 28 1 -0.3633 -0.8254 -0.6123 29 1 1.6321 2.1101 0.0004 30 1 4.0939 2.1480 0.0009 31 1 5.3607 0.0493 0.0005 32 1 4.2195 -5.5603 0.0016 33 1 2.5220 -8.8247 -1.4344 34 1 3.6528 -7.5835 -2.0242 35 1 1.9202 -7.2067 -1.8691 36 1 2.9582 -11.0333 0.3641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:01 Heat of formation + Delta-G solvation = 0.175793 kcal Electronic energy + Delta-G solvation = -21849.074817 eV Core-core repulsion = 18450.357942 eV Total energy + Delta-G solvation = -3398.716875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20453 -38.91902 -36.70501 -35.10137 -34.61986 -33.06537 -32.45551 -30.17405 -28.71769 -27.03683 -25.29615 -24.61372 -22.93821 -21.48953 -20.30944 -19.63428 -18.22455 -17.05265 -16.39797 -15.96967 -15.71003 -15.15054 -14.93875 -14.69477 -14.41194 -14.03637 -13.55305 -13.50153 -13.03828 -12.90061 -12.81533 -12.47119 -12.22039 -12.15170 -11.73088 -11.67401 -11.11504 -11.00156 -10.91949 -10.80959 -10.73298 -10.35418 -10.26619 -10.16305 -9.59103 -9.18164 -9.07976 -8.76243 -8.58741 -8.01116 -7.77301 -6.14901 -4.24347 0.15928 0.96704 1.11529 1.52637 1.76106 2.52227 3.22941 3.30661 3.33451 3.35501 3.68716 3.78617 4.32181 4.42867 4.58024 4.67927 4.93003 5.01712 5.15867 5.18047 5.32305 5.44072 5.49815 5.54202 5.66439 5.87557 5.97286 6.07997 6.27288 6.57657 6.79510 6.92624 7.10427 7.34410 7.48714 7.64918 7.86596 8.10431 8.52494 8.70888 8.95219 9.42745 10.91217 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.003510 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.278608 B = 7974.952827 C = 8986.939003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 C -0.127 4.127 4 C -0.088 4.088 5 C -0.092 4.092 6 C -0.128 4.128 7 S 0.163 5.837 8 C -0.204 4.204 9 C 0.566 3.434 10 O -0.517 6.517 11 N -0.697 5.697 12 C 0.265 3.735 13 H 0.053 0.947 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.017 3.983 24 Cl -0.009 7.009 25 C -0.080 4.080 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.386 0.614 33 H 0.092 0.908 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 22.761 -1.338 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.244 4.244 7 S 0.429 5.571 8 C -0.324 4.324 9 C 0.348 3.652 10 O -0.395 6.395 11 N -0.345 5.345 12 C 0.164 3.836 13 H 0.071 0.929 14 C -0.206 4.206 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.024 4.024 24 Cl 0.020 6.980 25 C -0.088 4.088 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.219 0.781 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.081 21.433 -1.353 21.503 hybrid contribution -0.183 0.164 0.385 0.457 sum 0.898 21.597 -0.968 21.638 Atomic orbital electron populations 1.21302 0.90557 1.03867 1.03568 1.19602 0.96259 0.90717 0.96187 1.20585 0.94358 0.97332 1.02453 1.21095 0.94097 0.97643 0.98081 1.20444 0.99738 0.89488 1.01805 1.22845 0.95958 0.98643 1.06996 1.84281 1.03294 0.93801 1.75706 1.24092 0.96782 0.99260 1.12292 1.16932 0.86610 0.82709 0.78938 1.90848 1.19009 1.79521 1.50147 1.46494 1.07362 1.09049 1.71633 1.18846 0.97812 0.72591 0.94301 0.92921 1.22089 0.97464 1.03961 0.97129 1.21229 1.02584 0.91973 1.41561 0.91952 1.24881 0.96224 0.97418 0.95099 1.69909 1.27626 1.08654 1.45765 0.86377 0.81963 0.79804 0.78880 1.19675 1.20823 1.20820 1.19789 0.87635 0.91489 1.03485 1.98374 1.08751 1.94904 1.95971 1.17680 0.92143 0.92119 1.06889 0.90413 0.91335 0.89662 0.85217 0.84948 0.85075 0.78109 0.88918 0.95364 0.96460 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.86 36.00 0.32 -1.00 16 2 C -0.03 -0.29 5.91 -104.20 -0.62 -0.90 16 3 C -0.13 -1.12 9.54 -40.15 -0.38 -1.51 16 4 C -0.09 -0.72 10.03 -39.62 -0.40 -1.12 16 5 C -0.09 -0.90 10.07 -39.26 -0.40 -1.29 16 6 C -0.13 -1.62 6.50 -38.29 -0.25 -1.87 16 7 S 0.16 2.22 22.25 -107.50 -2.39 -0.17 16 8 C -0.20 -3.56 6.32 -37.66 -0.24 -3.79 16 9 C 0.57 12.02 7.75 -12.79 -0.10 11.92 16 10 O -0.52 -12.49 14.40 5.21 0.08 -12.41 16 11 N -0.70 -15.14 5.06 -56.20 -0.28 -15.43 16 12 C 0.27 6.81 2.56 -69.08 -0.18 6.64 16 13 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 15 C -0.54 -14.22 8.73 -34.44 -0.30 -14.52 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 19 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.02 0.28 6.32 -40.26 -0.25 0.03 16 24 Cl -0.01 -0.15 23.00 -51.86 -1.19 -1.34 16 25 C -0.08 -1.10 5.83 -107.10 -0.62 -1.73 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.50 8.00 -51.93 -0.42 0.08 16 28 H 0.08 0.93 5.30 -51.93 -0.28 0.66 16 29 H 0.13 0.80 8.02 -52.48 -0.42 0.38 16 30 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.39 7.43 7.58 -40.82 -0.31 7.12 16 33 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.53 329.01 -10.18 -40.70 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.78 Total: 3.04 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.16 Total: -10.79 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.34 Total: -39.56 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.39 Total: -0.17 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.19 Total: -1.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.53 -10.18 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.880 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds