Wall clock time and date at job start Tue Mar 31 2020 13:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99840 * 3 2 1 5 5 H 1.48502 * 109.47350 * 29.99656 * 3 2 1 6 6 H 1.48507 * 109.47170 * 149.99764 * 3 2 1 7 7 C 1.37877 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47483 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47189 * 180.02562 * 11 10 9 13 13 C 1.34769 * 119.99851 * 180.02562 * 12 11 10 14 14 O 1.21657 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.46977 * 120.00073 * 180.02562 * 13 12 11 16 16 C 1.33693 * 124.65718 * 180.02562 * 15 13 12 17 17 C 1.40393 * 115.57475 * 180.02562 * 16 15 13 18 18 C 1.40065 * 112.57273 * 359.97438 * 17 16 15 19 19 C 1.39854 * 119.87462 * 179.97438 * 18 17 16 20 20 C 1.37457 * 120.20381 * 0.02562 * 19 18 17 21 21 C 1.38887 * 120.19965 * 359.72201 * 20 19 18 22 22 C 1.36087 * 120.68654 * 0.54178 * 21 20 19 23 23 Cl 1.73599 * 119.77302 * 179.74008 * 22 21 20 24 24 S 1.75485 * 124.65860 * 0.02562 * 15 13 12 25 25 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47363 * 59.99764 * 9 7 2 27 27 H 1.08996 * 109.47202 * 300.00119 * 9 7 2 28 28 H 1.09004 * 109.46685 * 59.99886 * 10 9 7 29 29 H 1.08996 * 109.47547 * 300.00445 * 10 9 7 30 30 H 1.08998 * 109.46857 * 60.00491 * 11 10 9 31 31 H 1.09004 * 109.46957 * 300.00460 * 11 10 9 32 32 H 0.96997 * 120.00423 * 0.02562 * 12 11 10 33 33 H 1.08001 * 122.21712 * 0.03650 * 16 15 13 34 34 H 1.07997 * 119.89770 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.89271 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.65756 * 180.29790 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0018 13 6 1.9833 -7.3712 0.0019 14 8 0.7872 -7.5935 0.0020 15 6 2.9384 -8.4883 0.0031 16 6 2.5966 -9.7808 0.0028 17 6 3.6659 -10.6905 0.0047 18 6 4.9135 -10.0538 0.0059 19 6 6.0852 -10.8172 0.0084 20 6 6.0161 -12.1901 0.0091 21 6 4.7821 -12.8274 0.0131 22 6 3.6280 -12.1064 0.0054 23 17 2.0985 -12.9276 0.0038 24 16 4.6841 -8.3088 0.0051 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8720 -3.6042 0.8906 29 1 2.8721 -3.6043 -0.8894 30 1 0.8536 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 3.3861 -5.9233 0.0021 33 1 1.5660 -10.1039 0.0011 34 1 7.0474 -10.3267 0.0098 35 1 6.9241 -12.7747 0.0106 36 1 4.7381 -13.9065 0.0185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:22 Heat of formation + Delta-G solvation = -34.920236 kcal Electronic energy + Delta-G solvation = -20555.714038 eV Core-core repulsion = 17155.475285 eV Total energy + Delta-G solvation = -3400.238753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24261 -40.55666 -37.60800 -37.17430 -36.33579 -35.27947 -33.19357 -31.89609 -30.86399 -28.70162 -26.09205 -24.92230 -24.09316 -22.46108 -22.40556 -21.08849 -19.66706 -18.57157 -18.08864 -17.37764 -16.97296 -16.89687 -16.52532 -16.26215 -15.88469 -15.71214 -15.22359 -15.08195 -14.98852 -14.28877 -14.07110 -13.79604 -13.63836 -13.22315 -13.09737 -12.76549 -12.69523 -12.58881 -12.41129 -12.24026 -12.18590 -11.81171 -11.71915 -11.69265 -11.33409 -11.15332 -10.64188 -10.55861 -10.35578 -9.74348 -8.87103 -8.19915 -6.31410 -0.96385 -0.01923 0.18146 0.55481 0.73353 1.07436 1.41804 1.43173 1.54110 1.88554 1.88758 2.42023 2.45975 3.13953 3.36639 3.66061 3.76329 3.82763 4.07717 4.15422 4.20979 4.36175 4.49226 4.53034 4.57290 4.70096 4.86840 4.89078 5.02365 5.11872 5.13753 5.22907 5.24883 5.50182 5.60940 5.68380 5.82965 6.20261 6.27246 6.85745 6.90417 7.38166 8.92174 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.002134 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.178331 B =13116.865889 C =14060.293955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.128 3.872 12 N -0.707 5.707 13 C 0.580 3.420 14 O -0.569 6.569 15 C -0.242 4.242 16 C -0.042 4.042 17 C -0.103 4.103 18 C -0.130 4.130 19 C -0.084 4.084 20 C -0.064 4.064 21 C -0.106 4.106 22 C -0.004 4.004 23 Cl -0.067 7.067 24 S 0.176 5.824 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.411 0.589 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.853 -29.470 0.027 34.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.357 5.357 13 C 0.367 3.633 14 O -0.450 6.450 15 C -0.360 4.360 16 C -0.075 4.075 17 C -0.112 4.112 18 C -0.247 4.247 19 C -0.106 4.106 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.033 4.033 23 Cl -0.038 7.038 24 S 0.444 5.556 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.247 0.753 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.202 0.798 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 17.631 -28.171 0.033 33.233 hybrid contribution -1.358 0.010 -0.014 1.358 sum 16.274 -28.161 0.019 32.525 Atomic orbital electron populations 1.70112 1.07940 1.27806 1.51661 1.26034 0.95762 1.03590 0.94792 0.85406 0.78685 0.78239 0.78458 1.19812 1.21080 1.18384 1.21668 0.93770 0.91934 1.50479 0.91473 1.18938 0.94392 0.92812 0.95234 1.21627 0.98568 0.91571 1.02338 1.21390 0.91721 0.84910 1.01454 1.45859 1.11179 1.04831 1.73871 1.17414 0.87171 0.82590 0.76142 1.90810 1.17200 1.85049 1.51924 1.23531 0.99171 0.96930 1.16370 1.20258 1.00854 0.90694 0.95729 1.17922 0.92229 0.92969 1.08079 1.23229 0.97192 0.97586 1.06684 1.21058 0.96326 0.94130 0.99115 1.21597 0.98490 0.93446 0.95072 1.21084 0.90227 1.02134 0.99240 1.20811 0.88445 0.89763 1.04277 1.98395 1.30668 1.78068 1.96655 1.83946 0.95673 1.00325 1.75636 0.92812 0.98808 0.98787 0.91206 0.91182 0.92421 0.92428 0.75256 0.83815 0.81727 0.79805 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -3.99 5.27 30.59 0.16 -3.83 16 11 C 0.13 4.64 5.67 86.38 0.49 5.13 16 12 N -0.71 -21.26 5.55 -466.81 -2.59 -23.85 16 13 C 0.58 18.91 7.79 86.53 0.67 19.58 16 14 O -0.57 -23.04 16.72 -4.21 -0.07 -23.11 16 15 C -0.24 -6.29 6.32 23.53 0.15 -6.14 16 16 C -0.04 -1.06 9.40 21.76 0.20 -0.86 16 17 C -0.10 -2.10 5.85 -21.47 -0.13 -2.22 16 18 C -0.13 -2.16 6.50 23.10 0.15 -2.01 16 19 C -0.08 -0.79 10.07 22.48 0.23 -0.57 16 20 C -0.06 -0.39 10.03 22.24 0.22 -0.16 16 21 C -0.11 -1.03 9.69 21.92 0.21 -0.82 16 22 C 0.00 -0.06 6.35 22.61 0.14 0.08 16 23 Cl -0.07 -1.18 28.45 -2.72 -0.08 -1.26 16 24 S 0.18 3.21 22.26 -56.49 -1.26 1.95 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.41 9.93 7.52 -92.71 -0.70 9.23 16 33 H 0.14 3.88 7.78 -2.91 -0.02 3.86 16 34 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -72.58 343.99 2.09 -70.49 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.42 Total: 6.96 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.35 Total: -20.06 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.31 Total: -80.74 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.26 Total: 1.95 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -72.58 2.09 -70.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.571 kcal (2) G-P(sol) polarization free energy of solvation -72.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds