Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5 11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21653 * 120.00244 * 0.02562 * 14 13 3 16 16 C 1.46976 * 119.99720 * 180.02562 * 14 13 3 17 17 C 1.33695 * 124.65835 * 180.02562 * 16 14 13 18 18 C 1.40383 * 115.58044 * 180.02562 * 17 16 14 19 19 C 1.40071 * 112.56819 * 359.97438 * 18 17 16 20 20 C 1.39856 * 119.87021 * 180.02562 * 19 18 17 21 21 C 1.37451 * 120.21027 * 359.97438 * 20 19 18 22 22 C 1.38889 * 120.19958 * 359.97438 * 21 20 19 23 23 C 1.36089 * 120.68310 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.76962 * 179.97438 * 23 22 21 25 25 S 1.75476 * 124.66105 * 359.70382 * 16 14 13 26 26 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 27 27 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.08007 * 122.21149 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.89380 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.90193 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.65880 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1451 -0.2345 11 1 6.3978 0.2158 -2.6499 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3379 2.6411 0.4280 16 6 0.0488 3.3267 2.6209 17 6 -1.1295 3.9211 2.8349 18 6 -1.2989 4.4905 4.1069 19 6 -0.1750 4.3216 4.9255 20 6 -0.1793 4.8307 6.2281 21 6 -1.2824 5.4963 6.7070 22 6 -2.3996 5.6680 5.8999 23 6 -2.4195 5.1818 4.6289 24 17 -3.8287 5.4094 3.6410 25 16 1.0645 3.4324 4.0479 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 -1.8998 3.9613 2.0789 34 1 0.6873 4.7010 6.8596 35 1 -1.2801 5.8877 7.7135 36 1 -3.2615 6.1928 6.2849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = -7.122065 kcal Electronic energy + Delta-G solvation = -21734.803512 eV Core-core repulsion = 18335.770178 eV Total energy + Delta-G solvation = -3399.033334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09031 -39.06995 -36.72769 -35.67871 -34.85772 -32.49633 -31.17856 -31.04633 -29.55340 -27.11117 -24.70219 -23.64246 -22.88788 -21.50330 -19.92296 -19.55803 -18.63337 -17.23212 -16.36651 -15.97366 -15.74733 -15.25211 -14.87771 -14.84121 -14.32770 -14.24848 -14.16160 -13.43873 -12.99675 -12.72257 -12.47624 -12.31096 -12.04723 -11.74036 -11.61510 -11.36650 -11.28439 -11.18695 -11.03207 -10.85174 -10.79660 -10.37881 -10.23398 -9.72610 -9.68516 -9.35435 -9.11366 -8.78141 -8.54730 -7.97157 -7.90761 -6.16097 -4.26171 0.12926 0.77758 1.24529 1.63385 1.86714 1.96339 3.22661 3.23972 3.29362 3.30299 3.70322 3.79204 4.31143 4.47856 4.50527 4.64651 4.91086 5.13412 5.15348 5.26265 5.41374 5.52351 5.74769 5.93619 6.03031 6.07936 6.31018 6.35861 6.42106 6.61351 6.99822 7.13701 7.25751 7.33659 7.55494 7.65534 7.83315 8.11753 8.49981 8.68410 8.93352 9.40708 10.89242 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.003207 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.200091 B = 8728.997819 C = 9602.282119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.696 5.696 14 C 0.568 3.432 15 O -0.527 6.527 16 C -0.192 4.192 17 C -0.063 4.063 18 C -0.070 4.070 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.092 4.092 22 C -0.114 4.114 23 C 0.009 3.991 24 Cl -0.060 7.060 25 S 0.144 5.856 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 9.066 18.147 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.343 5.343 14 C 0.351 3.649 15 O -0.407 6.407 16 C -0.312 4.312 17 C -0.095 4.095 18 C -0.080 4.080 19 C -0.249 4.249 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.020 4.020 24 Cl -0.031 7.031 25 S 0.411 5.589 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.219 0.781 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.967 8.353 17.392 20.874 hybrid contribution -0.244 0.489 -0.135 0.563 sum -8.211 8.841 17.257 21.057 Atomic orbital electron populations 1.21852 0.98302 0.98286 1.01207 1.21951 0.92658 0.99550 1.02523 1.18897 0.94495 0.89301 0.80356 0.92888 1.21164 0.90468 1.39467 1.06499 0.92054 1.24873 0.98717 0.94658 0.95275 1.69880 1.35309 1.37308 1.09329 0.86495 0.84673 0.78380 0.77504 1.20096 1.21080 1.20115 1.46482 1.13888 1.55093 1.18886 1.17020 0.83416 0.79328 0.85122 1.90811 1.51494 1.59915 1.38447 1.24254 0.99181 1.08033 0.99692 1.20164 0.97476 0.96016 0.95813 1.17934 0.93607 1.02129 0.94338 1.23006 0.98085 1.04970 0.98804 1.20581 0.99295 0.97652 0.92530 1.20994 0.92120 0.98337 0.99897 1.20602 0.99869 1.00919 0.92068 1.20591 0.88129 1.00535 0.92699 1.98390 1.38927 1.95544 1.70271 1.84270 1.15917 1.55090 1.03587 0.93020 0.95605 0.94417 0.88010 0.94872 0.92403 0.78062 0.82465 0.84723 0.84222 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.52 7.57 -51.93 -0.39 1.13 16 5 C -0.54 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.35 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.67 5.01 -56.15 -0.28 -14.95 16 14 C 0.57 11.63 6.36 -12.72 -0.08 11.55 16 15 O -0.53 -12.37 13.89 5.23 0.07 -12.30 16 16 C -0.19 -3.19 6.32 -37.64 -0.24 -3.43 16 17 C -0.06 -0.97 9.40 -40.37 -0.38 -1.35 16 18 C -0.07 -0.93 5.85 -107.10 -0.63 -1.56 16 19 C -0.13 -1.59 6.50 -38.29 -0.25 -1.84 16 20 C -0.08 -0.70 10.07 -39.26 -0.40 -1.10 16 21 C -0.09 -0.69 10.03 -39.63 -0.40 -1.09 16 22 C -0.11 -0.98 9.69 -40.11 -0.39 -1.37 16 23 C 0.01 0.10 6.35 -39.06 -0.25 -0.14 16 24 Cl -0.06 -0.67 28.45 -51.86 -1.48 -2.15 16 25 S 0.14 1.89 22.26 -107.50 -2.39 -0.50 16 26 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.82 5.67 -51.93 -0.29 0.53 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 7.25 7.59 -40.82 -0.31 6.94 16 33 H 0.16 2.47 7.78 -52.48 -0.41 2.06 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -29.38 331.46 -10.64 -40.02 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.78 Total: 5.64 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.38 Total: -12.38 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.34 Total: -38.68 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.39 Total: -0.50 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.38 -10.64 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds