Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5 11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21653 * 120.00244 * 0.02562 * 14 13 3 16 16 C 1.46976 * 119.99720 * 180.02562 * 14 13 3 17 17 C 1.33695 * 124.65835 * 180.02562 * 16 14 13 18 18 C 1.40383 * 115.58044 * 180.02562 * 17 16 14 19 19 C 1.40071 * 112.56819 * 359.97438 * 18 17 16 20 20 C 1.39856 * 119.87021 * 180.02562 * 19 18 17 21 21 C 1.37451 * 120.21027 * 359.97438 * 20 19 18 22 22 C 1.38889 * 120.19958 * 359.97438 * 21 20 19 23 23 C 1.36089 * 120.68310 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.76962 * 179.97438 * 23 22 21 25 25 S 1.75476 * 124.66105 * 359.70382 * 16 14 13 26 26 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 27 27 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.08007 * 122.21149 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.89380 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.90193 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.65880 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1451 -0.2345 11 1 6.3978 0.2158 -2.6499 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3379 2.6411 0.4280 16 6 0.0488 3.3267 2.6209 17 6 -1.1295 3.9211 2.8349 18 6 -1.2989 4.4905 4.1069 19 6 -0.1750 4.3216 4.9255 20 6 -0.1793 4.8307 6.2281 21 6 -1.2824 5.4963 6.7070 22 6 -2.3996 5.6680 5.8999 23 6 -2.4195 5.1818 4.6289 24 17 -3.8287 5.4094 3.6410 25 16 1.0645 3.4324 4.0479 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 -1.8998 3.9613 2.0789 34 1 0.6873 4.7010 6.8596 35 1 -1.2801 5.8877 7.7135 36 1 -3.2615 6.1928 6.2849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = -23.531656 kcal Electronic energy + Delta-G solvation = -21735.515085 eV Core-core repulsion = 18335.770178 eV Total energy + Delta-G solvation = -3399.744907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17288 -40.51620 -37.59217 -37.19160 -36.20751 -34.40769 -32.97940 -31.86281 -30.68398 -28.98405 -25.97159 -24.95756 -24.26494 -22.72206 -21.47946 -21.20540 -19.83534 -18.60844 -17.73158 -17.44127 -16.87568 -16.64335 -16.44251 -16.14654 -15.71153 -15.24792 -15.13322 -14.98641 -14.61109 -14.07078 -13.98042 -13.59217 -13.20881 -13.16337 -13.09211 -12.92613 -12.67274 -12.64560 -12.23521 -12.21105 -12.15124 -12.08571 -11.74274 -11.63483 -11.13620 -11.04579 -10.60824 -10.56119 -9.89562 -9.63650 -8.85026 -8.18481 -6.36698 -0.88560 0.01004 0.23799 0.62247 0.82049 1.10127 1.44740 1.46697 1.54519 2.10075 2.22771 2.46983 2.49810 3.10972 3.51957 3.73540 3.80455 3.92831 4.23238 4.39484 4.44548 4.52027 4.57693 4.60395 4.68736 4.77579 5.01349 5.06819 5.15270 5.21393 5.24482 5.37528 5.43408 5.54794 5.64117 5.72396 5.83295 6.10779 6.67305 6.76384 7.21439 7.38406 8.86910 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.003207 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.200091 B = 8728.997819 C = 9602.282119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.004 0.996 5 C -0.554 4.554 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.695 5.695 14 C 0.569 3.431 15 O -0.570 6.570 16 C -0.235 4.235 17 C -0.049 4.049 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.083 4.083 21 C -0.065 4.065 22 C -0.105 4.105 23 C -0.004 4.004 24 Cl -0.068 7.068 25 S 0.167 5.833 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.399 0.601 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.187 0.813 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 10.323 22.225 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.592 4.592 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.343 5.343 14 C 0.355 3.645 15 O -0.451 6.451 16 C -0.354 4.354 17 C -0.082 4.082 18 C -0.110 4.110 19 C -0.249 4.249 20 C -0.105 4.105 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.033 4.033 24 Cl -0.039 7.039 25 S 0.434 5.566 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.204 0.796 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.414 9.617 21.506 24.697 hybrid contribution -0.562 0.240 -1.227 1.371 sum -7.976 9.857 20.279 23.917 Atomic orbital electron populations 1.21693 0.97064 0.99403 1.00129 1.21800 0.93683 0.98859 1.01641 1.18502 0.94061 0.89329 0.80540 0.97815 1.21503 0.91076 1.39563 1.07024 0.91084 1.25760 1.03477 0.94131 0.94821 1.70032 1.37246 1.37975 1.09820 0.85409 0.78834 0.78512 0.77678 1.18784 1.21040 1.19642 1.46209 1.14681 1.55368 1.18052 1.17466 0.82465 0.78463 0.86132 1.90772 1.52462 1.61395 1.40516 1.23728 1.01144 1.10678 0.99848 1.20225 0.96451 0.94863 0.96637 1.17923 0.95323 1.04028 0.93696 1.23246 0.96970 1.04757 0.99908 1.21055 1.01075 0.97076 0.91291 1.21587 0.90300 0.95519 1.01284 1.21081 1.01296 0.99455 0.90741 1.20804 0.87529 1.01234 0.93779 1.98388 1.39114 1.95567 1.70816 1.83969 1.15442 1.55573 1.01578 0.95277 0.93195 0.94307 0.90426 0.93922 0.92424 0.76638 0.84071 0.81746 0.79607 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.52 71.98 0.61 -5.22 16 2 C -0.12 -6.07 5.45 30.59 0.17 -5.90 16 3 C 0.28 14.60 2.24 44.24 0.10 14.70 16 4 H 0.00 0.24 7.57 -2.39 -0.02 0.23 16 5 C -0.55 -29.59 8.73 25.60 0.22 -29.37 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.14 11.29 21.45 0.24 -51.90 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 N -0.70 -30.57 5.01 -449.80 -2.25 -32.82 16 14 C 0.57 24.64 6.36 86.53 0.55 25.19 16 15 O -0.57 -28.72 13.89 -4.20 -0.06 -28.77 16 16 C -0.24 -8.10 6.32 23.53 0.15 -7.95 16 17 C -0.05 -1.56 9.40 21.76 0.20 -1.35 16 18 C -0.10 -2.58 5.85 -21.47 -0.13 -2.71 16 19 C -0.13 -2.89 6.50 23.11 0.15 -2.74 16 20 C -0.08 -1.11 10.07 22.48 0.23 -0.89 16 21 C -0.07 -0.60 10.03 22.24 0.22 -0.38 16 22 C -0.11 -1.37 9.69 21.93 0.21 -1.15 16 23 C 0.00 -0.09 6.35 22.61 0.14 0.05 16 24 Cl -0.07 -1.46 28.45 -2.72 -0.08 -1.53 16 25 S 0.17 4.24 22.26 -56.49 -1.26 2.99 16 26 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 27 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.04 1.76 5.67 -2.39 -0.01 1.75 16 29 H 0.08 4.30 5.95 -2.38 -0.01 4.28 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 15.32 7.59 -92.70 -0.70 14.62 16 33 H 0.14 4.79 7.78 -2.91 -0.02 4.76 16 34 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -68.16 331.46 2.33 -65.83 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.43 Total: 18.50 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 3.28 Total: -16.26 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.01 Total: -84.72 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.06 Total: -28.77 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.99 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -68.16 2.33 -65.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.297 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds