Wall clock time and date at job start Tue Mar 31 2020 13:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47124 * 269.99802 * 3 2 1 5 5 H 1.48508 * 109.47016 * 29.99808 * 3 2 1 6 6 H 1.48501 * 109.47283 * 149.99463 * 3 2 1 7 7 C 1.39951 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00155 * 197.86731 * 7 2 1 9 9 C 1.41392 * 119.99591 * 17.87573 * 7 2 1 10 10 C 1.40734 * 120.24662 * 24.36633 * 9 7 2 11 11 C 1.37602 * 119.74386 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25002 * 359.72718 * 11 10 9 13 13 C 1.38614 * 120.49896 * 0.55312 * 12 11 10 14 14 S 1.76203 * 119.87622 * 179.72124 * 13 12 11 15 15 O 1.42095 * 106.40387 * 156.18437 * 14 13 12 16 16 O 1.42104 * 106.39917 * 23.26556 * 14 13 12 17 17 O 1.52198 * 107.21657 * 269.72915 * 14 13 12 18 18 C 1.35953 * 114.00086 * 75.00184 * 17 14 13 19 19 C 1.39180 * 120.44050 * 269.97250 * 18 17 14 20 20 C 1.38453 * 118.41005 * 180.02562 * 19 18 17 21 21 C 1.38564 * 119.19217 * 0.02562 * 20 19 18 22 22 F 1.35093 * 119.58852 * 180.02562 * 21 20 19 23 23 N 1.31998 * 120.81865 * 359.97438 * 21 20 19 24 24 C 1.31924 * 121.74286 * 0.02562 * 23 21 20 25 25 C 1.37638 * 120.24759 * 359.44481 * 13 12 11 26 26 H 0.96998 * 120.00239 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.12949 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.87108 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.75325 * 180.29929 * 12 11 10 30 30 H 1.08002 * 120.79607 * 0.04969 * 19 18 17 31 31 H 1.08000 * 120.40531 * 179.97438 * 20 19 18 32 32 H 1.08009 * 119.63550 * 179.97438 * 24 23 21 33 33 H 1.08007 * 120.12477 * 180.25026 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3522 -2.4071 -0.3748 10 6 0.2208 -2.3624 -1.2106 11 6 -0.4098 -3.5318 -1.5690 12 6 0.0689 -4.7511 -1.1145 13 6 1.1790 -4.8066 -0.2863 14 16 1.7689 -6.3646 0.2876 15 8 3.1423 -6.1821 0.6034 16 8 1.3075 -7.3354 -0.6419 17 8 1.0608 -6.6579 1.6025 18 6 -0.2361 -7.0397 1.4590 19 6 -1.2542 -6.0908 1.4550 20 6 -2.5600 -6.5263 1.3066 21 6 -2.8086 -7.8825 1.1685 22 9 -4.0797 -8.3162 1.0227 23 7 -1.8188 -8.7557 1.1768 24 6 -0.5621 -8.3790 1.3159 25 6 1.8256 -3.6497 0.0850 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1511 -1.4141 -1.5693 28 1 -1.2779 -3.5000 -2.2106 29 1 -0.4293 -5.6643 -1.4048 30 1 -1.0310 -5.0398 1.5645 31 1 -3.3751 -5.8178 1.2993 32 1 0.2212 -9.1227 1.3183 33 1 2.6928 -3.6955 0.7272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795157053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:08 Heat of formation + Delta-G solvation = -87.340858 kcal Electronic energy + Delta-G solvation = -24615.603172 eV Core-core repulsion = 20648.921820 eV Total energy + Delta-G solvation = -3966.681352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.27106 -41.35579 -38.93574 -37.83159 -36.96294 -35.66391 -34.01475 -32.89601 -30.50015 -30.23150 -30.00892 -25.64708 -24.49809 -24.15048 -22.18184 -21.16035 -20.81784 -18.72565 -18.37718 -18.16439 -17.63182 -17.28507 -16.25354 -16.15649 -15.41754 -15.18322 -14.91218 -14.82126 -14.37742 -13.97353 -13.60003 -13.53895 -13.41601 -13.31084 -12.77569 -12.67636 -12.39455 -12.06347 -11.86060 -11.79882 -11.59969 -11.50023 -11.16775 -11.03427 -10.71316 -10.33068 -10.05830 -9.89617 -9.68524 -9.47946 -9.19158 -8.24525 -7.87128 -7.06336 -4.67386 0.12308 0.72229 0.97516 1.90492 2.48621 2.68658 2.93203 2.97301 2.98552 3.16078 3.25473 3.73711 3.91222 4.11258 4.23751 4.34665 4.45168 4.55109 4.84996 5.18103 5.24874 5.52979 5.59048 5.73250 5.90519 5.99509 6.28129 6.51250 6.60087 6.69113 6.90362 7.03760 7.19900 7.20195 7.55603 7.66508 7.78746 8.26018 8.52321 8.56730 9.88981 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.004168 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.685038 B = 6716.315842 C = 7701.232992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.085 0.915 9 C 0.092 3.908 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.150 4.150 13 C -0.653 4.653 14 S 2.664 3.336 15 O -0.936 6.936 16 O -0.967 6.967 17 O -0.659 6.659 18 C 0.016 3.984 19 C -0.034 4.034 20 C -0.174 4.174 21 C 0.319 3.681 22 F -0.105 7.105 23 N -0.496 5.496 24 C 0.167 3.833 25 C -0.121 4.121 26 H 0.285 0.715 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -7.248 2.889 9.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.103 0.897 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.171 4.171 13 C -0.744 4.744 14 S 2.763 3.237 15 O -0.934 6.934 16 O -0.965 6.965 17 O -0.616 6.616 18 C -0.028 4.028 19 C -0.061 4.061 20 C -0.195 4.195 21 C 0.165 3.835 22 F -0.084 7.084 23 N -0.211 5.211 24 C 0.007 3.993 25 C -0.142 4.142 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.198 0.802 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.071 -8.558 3.052 10.406 hybrid contribution 0.119 2.386 -0.209 2.399 sum -4.952 -6.172 2.843 8.409 Atomic orbital electron populations 1.69753 1.07701 1.29879 1.34313 1.25953 0.94816 1.01690 0.91869 0.86209 0.80564 0.79915 0.79581 1.19055 1.20118 1.18315 1.19681 0.98524 0.90915 1.39486 0.89668 1.17694 0.91810 0.91946 0.89764 1.21687 0.97417 0.97282 0.96999 1.20805 0.99452 0.92955 1.00544 1.20062 0.97085 0.97405 1.02545 1.29821 1.10518 1.18207 1.15848 1.02444 0.74021 0.75167 0.72066 1.93585 1.30353 1.87058 1.82434 1.93574 1.81311 1.59501 1.62126 1.85806 1.29803 1.86147 1.59820 1.19018 0.80025 0.94620 1.09178 1.21956 0.90760 1.01938 0.91474 1.21796 0.98392 0.94780 1.04559 1.18277 0.80178 0.88900 0.96167 1.91650 1.33708 1.90874 1.92196 1.67146 0.99564 1.38409 1.16026 1.22702 0.92346 0.93162 0.91081 1.20829 1.00368 0.91521 1.01491 0.90398 0.85572 0.88189 0.87699 0.81192 0.81864 0.80214 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.35 10.95 55.55 0.61 -17.75 16 2 C 0.08 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.46 -11.11 9.05 -37.74 -0.34 -11.45 16 8 H 0.09 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.09 2.22 5.58 -106.83 -0.60 1.62 16 10 C -0.11 -2.63 8.70 -38.87 -0.34 -2.97 16 11 C -0.12 -2.41 10.02 -39.66 -0.40 -2.81 16 12 C -0.15 -2.96 8.48 -39.29 -0.33 -3.29 16 13 C -0.65 -13.32 5.35 -39.66 -0.21 -13.53 16 14 S 2.66 48.83 5.42 -107.50 -0.58 48.24 16 15 O -0.94 -19.45 17.26 -66.81 -1.15 -20.61 16 16 O -0.97 -18.12 15.60 -66.81 -1.04 -19.16 16 17 O -0.66 -10.50 10.18 -51.72 -0.53 -11.03 16 18 C 0.02 0.23 4.81 -39.10 -0.19 0.05 16 19 C -0.03 -0.45 8.57 -39.15 -0.34 -0.78 16 20 C -0.17 -1.96 10.08 -39.38 -0.40 -2.35 16 21 C 0.32 3.99 8.41 -17.36 -0.15 3.84 16 22 F -0.11 -1.26 17.29 2.25 0.04 -1.22 16 23 N -0.50 -6.79 10.37 -13.48 -0.14 -6.93 16 24 C 0.17 2.23 10.36 -17.38 -0.18 2.05 16 25 C -0.12 -2.74 9.26 -38.87 -0.36 -3.10 16 26 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 27 H 0.13 2.98 6.16 -52.49 -0.32 2.65 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.89 7.59 -52.49 -0.40 1.49 16 30 H 0.17 2.21 8.03 -52.49 -0.42 1.79 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.18 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.11 2.51 7.60 -52.48 -0.40 2.12 16 LS Contribution 311.55 15.07 4.69 4.69 Total: -1.00 -27.90 311.55 -9.41 -37.30 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -2.36 Total: 5.38 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -3.91 Total: -31.09 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.47 Total: -24.68 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -2.72 Total: -50.79 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 48.83 SS G_CDS: -0.58 Total: 48.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.90 -9.41 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795157053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.037 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds