Wall clock time and date at job start Tue Mar 31 2020 13:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47124 * 269.99802 * 3 2 1 5 5 H 1.48508 * 109.47016 * 29.99808 * 3 2 1 6 6 H 1.48501 * 109.47283 * 149.99463 * 3 2 1 7 7 C 1.39951 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00155 * 197.86731 * 7 2 1 9 9 C 1.41392 * 119.99591 * 17.87573 * 7 2 1 10 10 C 1.40734 * 120.24662 * 24.36633 * 9 7 2 11 11 C 1.37602 * 119.74386 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25002 * 359.72718 * 11 10 9 13 13 C 1.38614 * 120.49896 * 0.55312 * 12 11 10 14 14 S 1.76203 * 119.87622 * 179.72124 * 13 12 11 15 15 O 1.42095 * 106.40387 * 156.18437 * 14 13 12 16 16 O 1.42104 * 106.39917 * 23.26556 * 14 13 12 17 17 O 1.52198 * 107.21657 * 269.72915 * 14 13 12 18 18 C 1.35953 * 114.00086 * 75.00184 * 17 14 13 19 19 C 1.39180 * 120.44050 * 269.97250 * 18 17 14 20 20 C 1.38453 * 118.41005 * 180.02562 * 19 18 17 21 21 C 1.38564 * 119.19217 * 0.02562 * 20 19 18 22 22 F 1.35093 * 119.58852 * 180.02562 * 21 20 19 23 23 N 1.31998 * 120.81865 * 359.97438 * 21 20 19 24 24 C 1.31924 * 121.74286 * 0.02562 * 23 21 20 25 25 C 1.37638 * 120.24759 * 359.44481 * 13 12 11 26 26 H 0.96998 * 120.00239 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.12949 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.87108 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.75325 * 180.29929 * 12 11 10 30 30 H 1.08002 * 120.79607 * 0.04969 * 19 18 17 31 31 H 1.08000 * 120.40531 * 179.97438 * 20 19 18 32 32 H 1.08009 * 119.63550 * 179.97438 * 24 23 21 33 33 H 1.08007 * 120.12477 * 180.25026 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3522 -2.4071 -0.3748 10 6 0.2208 -2.3624 -1.2106 11 6 -0.4098 -3.5318 -1.5690 12 6 0.0689 -4.7511 -1.1145 13 6 1.1790 -4.8066 -0.2863 14 16 1.7689 -6.3646 0.2876 15 8 3.1423 -6.1821 0.6034 16 8 1.3075 -7.3354 -0.6419 17 8 1.0608 -6.6579 1.6025 18 6 -0.2361 -7.0397 1.4590 19 6 -1.2542 -6.0908 1.4550 20 6 -2.5600 -6.5263 1.3066 21 6 -2.8086 -7.8825 1.1685 22 9 -4.0797 -8.3162 1.0227 23 7 -1.8188 -8.7557 1.1768 24 6 -0.5621 -8.3790 1.3159 25 6 1.8256 -3.6497 0.0850 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1511 -1.4141 -1.5693 28 1 -1.2779 -3.5000 -2.2106 29 1 -0.4293 -5.6643 -1.4048 30 1 -1.0310 -5.0398 1.5645 31 1 -3.3751 -5.8178 1.2993 32 1 0.2212 -9.1227 1.3183 33 1 2.6928 -3.6955 0.7272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795157053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:07 Heat of formation + Delta-G solvation = -103.937056 kcal Electronic energy + Delta-G solvation = -24616.322837 eV Core-core repulsion = 20648.921820 eV Total energy + Delta-G solvation = -3967.401017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.24191 -42.51661 -40.08092 -39.51670 -38.49148 -37.20292 -35.71437 -33.91910 -31.94820 -31.68757 -31.53750 -27.38181 -25.52618 -25.26102 -23.80542 -22.84493 -22.09314 -20.26403 -19.45200 -19.33553 -18.93589 -18.67576 -17.78643 -17.24788 -16.99637 -16.71032 -16.36017 -15.84099 -15.55427 -15.38106 -15.09895 -14.93983 -14.50378 -14.39767 -14.34036 -13.89049 -13.78791 -13.68132 -13.44257 -13.35424 -13.23414 -13.09397 -12.85177 -12.64053 -12.23399 -11.59246 -11.41731 -11.29296 -11.15528 -11.04591 -10.26164 -9.91834 -9.59480 -8.75620 -6.47065 -1.13073 -0.30161 -0.23413 0.25807 0.81577 1.29925 1.38846 1.47604 1.50566 2.14154 2.17456 2.25744 2.40652 2.57624 3.00880 3.16696 3.31509 3.49196 3.53890 3.75228 4.18238 4.29715 4.38479 4.51085 4.58908 4.70361 4.83171 4.87668 5.01391 5.18167 5.27418 5.35810 5.50614 5.85188 5.91560 6.07682 6.18572 6.50099 6.77184 6.81608 8.21995 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.004168 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.685038 B = 6716.315842 C = 7701.232992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.042 3.958 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.065 3.935 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.137 4.137 13 C -0.657 4.657 14 S 2.693 3.307 15 O -0.964 6.964 16 O -0.968 6.968 17 O -0.650 6.650 18 C -0.013 4.013 19 C -0.039 4.039 20 C -0.158 4.158 21 C 0.320 3.680 22 F -0.101 7.101 23 N -0.510 5.510 24 C 0.168 3.832 25 C -0.143 4.143 26 H 0.293 0.707 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.169 0.831 31 H 0.196 0.804 32 H 0.201 0.799 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -7.739 2.671 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.174 4.174 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.062 3.938 10 C -0.151 4.151 11 C -0.135 4.135 12 C -0.158 4.158 13 C -0.745 4.745 14 S 2.790 3.210 15 O -0.963 6.963 16 O -0.966 6.966 17 O -0.608 6.608 18 C -0.057 4.057 19 C -0.066 4.066 20 C -0.178 4.178 21 C 0.166 3.834 22 F -0.080 7.080 23 N -0.226 5.226 24 C 0.008 3.992 25 C -0.164 4.164 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.187 0.813 31 H 0.213 0.787 32 H 0.217 0.783 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.507 -9.038 2.821 11.489 hybrid contribution 0.394 2.342 -0.115 2.378 sum -6.113 -6.696 2.706 9.462 Atomic orbital electron populations 1.69769 1.08680 1.31093 1.34547 1.26644 0.95544 1.04192 0.91032 0.85232 0.79134 0.76042 0.79594 1.18679 1.18968 1.18569 1.19880 0.98618 0.92316 1.41772 0.90450 1.17999 0.92700 0.92613 0.90498 1.21695 0.97783 0.97938 0.97715 1.21118 0.99920 0.92224 1.00214 1.20388 0.96319 0.98113 1.00993 1.30159 1.10214 1.18702 1.15440 1.01688 0.73240 0.74033 0.71994 1.93548 1.32439 1.87180 1.83098 1.93557 1.81249 1.58966 1.62849 1.85781 1.30900 1.86004 1.58110 1.19351 0.79329 0.95621 1.11417 1.22067 0.91294 1.01752 0.91486 1.22040 0.98386 0.94770 1.02644 1.18464 0.80131 0.89308 0.95476 1.91667 1.33386 1.90888 1.92032 1.67181 0.99824 1.38976 1.16597 1.23010 0.92788 0.93162 0.90220 1.20863 1.01008 0.92098 1.02462 0.89584 0.86645 0.85115 0.85219 0.81345 0.78676 0.78283 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.20 10.95 21.83 0.24 -37.96 16 2 C 0.04 1.96 5.14 85.26 0.44 2.40 16 3 Si 0.98 35.47 29.59 68.60 2.03 37.50 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.50 -25.04 9.05 23.46 0.21 -24.83 16 8 H 0.08 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.07 3.24 5.58 -21.29 -0.12 3.13 16 10 C -0.13 -6.11 8.70 22.73 0.20 -5.91 16 11 C -0.12 -4.55 10.02 22.22 0.22 -4.33 16 12 C -0.14 -5.16 8.48 22.46 0.19 -4.97 16 13 C -0.66 -26.42 5.35 22.22 0.12 -26.30 16 14 S 2.69 96.34 5.42 -56.49 -0.31 96.03 16 15 O -0.96 -40.12 17.26 -118.78 -2.05 -42.17 16 16 O -0.97 -34.44 15.60 -118.78 -1.85 -36.30 16 17 O -0.65 -20.05 10.18 -62.30 -0.63 -20.69 16 18 C -0.01 -0.35 4.81 22.58 0.11 -0.24 16 19 C -0.04 -0.94 8.57 22.55 0.19 -0.74 16 20 C -0.16 -3.05 10.08 22.40 0.23 -2.83 16 21 C 0.32 7.11 8.41 84.75 0.71 7.82 16 22 F -0.10 -2.13 17.29 44.97 0.78 -1.36 16 23 N -0.51 -12.75 10.37 -196.57 -2.04 -14.79 16 24 C 0.17 4.13 10.36 84.76 0.88 5.01 16 25 C -0.14 -6.64 9.26 22.73 0.21 -6.43 16 26 H 0.29 12.32 8.30 -92.71 -0.77 11.55 16 27 H 0.12 5.54 6.16 -2.91 -0.02 5.52 16 28 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.13 4.23 7.59 -2.91 -0.02 4.21 16 30 H 0.17 4.14 8.03 -2.91 -0.02 4.12 16 31 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -59.80 311.55 0.93 -58.87 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.17 Total: 19.09 kcal Atomic # 6 Polarization: -61.82 SS G_CDS: 3.59 Total: -58.23 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -1.80 Total: -52.75 kcal Atomic # 8 Polarization: -94.62 SS G_CDS: -4.54 Total: -99.15 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Atomic # 16 Polarization: 96.34 SS G_CDS: -0.31 Total: 96.03 kcal Total: -59.80 0.93 -58.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795157053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.064 kcal (2) G-P(sol) polarization free energy of solvation -59.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds