Wall clock time and date at job start Tue Mar 31 2020 13:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99758 * 2 1 4 4 O 1.20819 * 120.00030 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99829 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47077 * 180.02562 * 5 3 2 7 7 C 1.37104 * 120.00091 * 96.23052 * 6 5 3 8 8 H 1.08004 * 120.00188 * 154.32203 * 7 6 5 9 9 C 1.38952 * 119.99761 * 334.32249 * 7 6 5 10 10 N 1.31408 * 119.99917 * 3.67911 * 9 7 6 11 11 Si 1.86797 * 120.00089 * 183.67736 * 9 7 6 12 12 H 1.48500 * 109.46901 * 90.00182 * 11 9 7 13 13 H 1.48499 * 109.47463 * 210.00190 * 11 9 7 14 14 H 1.48503 * 109.47131 * 330.00318 * 11 9 7 15 15 C 1.34783 * 120.00419 * 276.23466 * 6 5 3 16 16 O 1.21291 * 119.99700 * 359.97438 * 15 6 5 17 17 C 1.50693 * 120.00208 * 180.02562 * 15 6 5 18 18 C 1.53002 * 109.47296 * 176.94583 * 17 15 6 19 19 C 1.53002 * 115.55098 * 65.82770 * 18 17 15 20 20 C 1.53003 * 117.49371 * 280.16158 * 18 17 15 21 21 C 1.53000 * 117.49779 * 211.50639 * 18 17 15 22 22 Cl 1.80303 * 117.49660 * 214.97772 * 21 18 17 23 23 Cl 1.80302 * 117.50068 * 359.97438 * 21 18 17 24 24 H 1.09001 * 109.46850 * 299.98799 * 1 2 3 25 25 H 1.08999 * 109.47466 * 59.99442 * 1 2 3 26 26 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46483 * 60.01015 * 5 3 2 28 28 H 1.08997 * 109.47814 * 300.01013 * 5 3 2 29 29 H 0.97003 * 120.00098 * 179.97438 * 10 9 7 30 30 H 1.09010 * 109.46757 * 296.93962 * 17 15 6 31 31 H 1.08993 * 109.47636 * 56.93924 * 17 15 6 32 32 H 1.09000 * 109.46608 * 55.86114 * 19 18 17 33 33 H 1.09002 * 109.46994 * 175.85279 * 19 18 17 34 34 H 1.08995 * 109.47316 * 295.85757 * 19 18 17 35 35 H 1.08993 * 117.49976 * 359.97438 * 20 18 17 36 36 H 1.08998 * 117.49328 * 144.99529 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.2991 3.3004 1.1817 8 1 4.9738 4.1437 1.1841 9 6 3.7528 2.8442 2.3751 10 7 2.9897 1.7745 2.3819 11 14 4.1032 3.7517 3.9698 12 1 3.0684 4.7952 4.1831 13 1 4.0782 2.7910 5.1019 14 1 5.4416 4.3904 3.8921 15 6 4.0516 3.3623 -1.1590 16 8 3.7711 2.8133 -2.2035 17 6 4.4794 4.8073 -1.1585 18 6 4.5477 5.3195 -2.5986 19 6 3.2101 5.3894 -3.3383 20 6 5.7899 4.9621 -3.4173 21 6 5.5884 6.3948 -2.9174 22 17 5.1449 7.6472 -4.1363 23 17 6.6400 6.9619 -1.5670 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7807 -0.8893 28 1 3.9558 0.7809 0.8907 29 1 2.6086 1.4558 3.2151 30 1 3.7576 5.3997 -0.5961 31 1 5.4617 4.8953 -0.6946 32 1 2.5110 6.0007 -2.7677 33 1 3.3618 5.8335 -4.3221 34 1 2.8048 4.3840 -3.4520 35 1 6.5585 4.3626 -2.9298 36 1 5.6542 4.7769 -4.4828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826100938.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:15 Heat of formation + Delta-G solvation = -110.909563 kcal Electronic energy + Delta-G solvation = -23940.097884 eV Core-core repulsion = 20091.378266 eV Total energy + Delta-G solvation = -3848.719618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 323.052 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37904 -40.50828 -39.07266 -37.27741 -37.01572 -36.68803 -36.36960 -33.43587 -31.34327 -29.80772 -28.88906 -27.70526 -26.29706 -23.33775 -22.36656 -21.21629 -20.37138 -18.71933 -18.40923 -18.07661 -17.28132 -17.15702 -16.95635 -16.36082 -16.04548 -15.70439 -15.47364 -14.87012 -14.35135 -14.22590 -14.06323 -13.89069 -13.67015 -13.27665 -13.11311 -13.03933 -12.91305 -12.69875 -12.60363 -12.54131 -12.47766 -12.28674 -12.16790 -12.05527 -11.63090 -11.56136 -11.44832 -11.02937 -10.90959 -10.77126 -10.26711 -9.80348 -8.32722 -6.00854 0.15258 1.21234 1.42194 1.47902 1.58045 1.72239 1.85431 2.14288 2.30454 2.35082 2.92689 3.14041 3.26902 3.39779 3.86295 4.03054 4.27955 4.36328 4.39206 4.41195 4.62427 4.64132 4.66823 4.73654 4.77894 4.85543 4.93661 4.95205 5.04649 5.35566 5.44151 5.68058 5.82354 6.35595 7.09614 7.24011 7.51300 7.91015 8.70927 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.004757 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.993939 B = 5884.893668 C = 7346.488964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.489 3.511 4 O -0.546 6.546 5 C 0.154 3.846 6 N -0.447 5.447 7 C -0.342 4.342 8 H 0.114 0.886 9 C 0.000 4.000 10 N -0.906 5.906 11 Si 0.989 3.011 12 H -0.285 1.285 13 H -0.282 1.282 14 H -0.253 1.253 15 C 0.474 3.526 16 O -0.609 6.609 17 C -0.082 4.082 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.118 4.118 21 C 0.009 3.991 22 Cl -0.094 7.094 23 Cl -0.100 7.100 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 3.741 -6.409 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.333 3.667 4 O -0.434 6.434 5 C 0.028 3.972 6 N -0.166 5.166 7 C -0.469 4.469 8 H 0.131 0.869 9 C -0.201 4.201 10 N -0.546 5.546 11 Si 0.813 3.187 12 H -0.212 1.212 13 H -0.207 1.207 14 H -0.177 1.177 15 C 0.264 3.736 16 O -0.496 6.496 17 C -0.122 4.122 18 C -0.072 4.072 19 C -0.171 4.171 20 C -0.156 4.156 21 C -0.042 4.042 22 Cl -0.067 7.067 23 Cl -0.073 7.073 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.297 3.796 -6.747 8.414 hybrid contribution -0.418 0.528 1.220 1.394 sum 2.879 4.324 -5.527 7.585 Atomic orbital electron populations 1.23280 0.76376 1.04808 1.01110 1.86436 1.23957 1.33989 1.84966 1.24187 0.92784 0.80598 0.69113 1.90471 1.67511 1.37713 1.47752 1.20619 0.86706 0.85977 1.03854 1.43529 1.57960 1.08444 1.06667 1.19999 1.27273 1.16054 0.83533 0.86872 1.26074 0.94640 0.96642 1.02735 1.69766 1.32925 1.23220 1.28675 0.84969 0.79022 0.77692 0.76982 1.21179 1.20741 1.17692 1.20563 0.80868 0.88968 0.83189 1.90496 1.55663 1.71191 1.32254 1.20967 1.04035 0.92799 0.94370 1.21934 0.93525 0.95426 0.96351 1.21398 0.93239 1.02802 0.99685 1.24087 0.98937 0.89618 1.02953 1.27219 1.01444 0.85959 0.89611 1.98717 1.92878 1.58219 1.56842 1.98735 1.68838 1.90804 1.48893 0.93755 0.93062 0.84899 0.89876 0.85066 0.91980 0.89191 0.88121 0.92242 0.90296 0.91590 0.86137 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.26 10.56 113.37 1.20 2.46 16 2 O -0.38 -15.98 10.57 -51.43 -0.54 -16.53 16 3 C 0.49 24.03 6.10 71.24 0.43 24.46 16 4 O -0.55 -30.04 15.89 21.98 0.35 -29.69 16 5 C 0.15 7.27 5.13 85.63 0.44 7.71 16 6 N -0.45 -21.45 2.18 -639.59 -1.40 -22.85 16 7 C -0.34 -16.28 9.05 84.04 0.76 -15.52 16 8 H 0.11 4.98 6.56 -2.91 -0.02 4.96 16 9 C 0.00 -0.01 5.34 84.93 0.45 0.44 16 10 N -0.91 -45.73 8.67 21.66 0.19 -45.54 16 11 Si 0.99 38.80 29.55 68.60 2.03 40.83 16 12 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 14 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 15 C 0.47 21.27 7.29 87.65 0.64 21.91 16 16 O -0.61 -28.95 14.04 -3.07 -0.04 -29.00 16 17 C -0.08 -3.01 3.85 29.85 0.11 -2.90 16 18 C -0.07 -2.18 1.63 -52.18 -0.08 -2.27 16 19 C -0.11 -3.54 9.06 71.98 0.65 -2.89 16 20 C -0.12 -3.09 9.66 30.62 0.30 -2.79 16 21 C 0.01 0.24 3.61 30.62 0.11 0.35 16 22 Cl -0.09 -2.26 27.58 -2.72 -0.08 -2.34 16 23 Cl -0.10 -2.66 27.55 -2.72 -0.07 -2.74 16 24 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 25 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 26 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.08 3.68 7.62 -2.38 -0.02 3.66 16 28 H 0.13 6.31 6.21 -2.39 -0.01 6.29 16 29 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 30 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 31 H 0.10 3.47 6.11 -2.39 -0.01 3.46 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.06 6.85 -2.39 -0.02 2.04 16 34 H 0.07 2.42 6.47 -2.39 -0.02 2.40 16 35 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -60.23 333.73 6.56 -53.67 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.12 Total: 23.23 kcal Atomic # 6 Polarization: 25.94 SS G_CDS: 5.01 Total: 30.95 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -1.21 Total: -68.39 kcal Atomic # 8 Polarization: -74.98 SS G_CDS: -0.24 Total: -75.22 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 17 Polarization: -4.93 SS G_CDS: -0.15 Total: -5.08 kcal Total: -60.23 6.56 -53.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826100938.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.244 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds