Wall clock time and date at job start Tue Mar 31 2020 13:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43194 * 119.99918 * 191.41119 * 3 2 1 5 5 N 3.51033 * 140.69121 * 191.41398 * 2 1 3 6 6 C 1.41150 * 119.99816 * 11.41316 * 3 2 1 7 7 C 1.38988 * 120.00363 * 353.09782 * 6 3 2 8 8 H 1.07996 * 120.00233 * 130.03920 * 7 6 3 9 9 C 1.40819 * 119.99789 * 310.03729 * 7 6 3 10 10 N 1.30342 * 120.00239 * 157.02200 * 9 7 6 11 11 Si 1.86805 * 119.99953 * 337.02611 * 9 7 6 12 12 H 1.48503 * 109.47187 * 95.22455 * 11 9 7 13 13 H 1.48509 * 109.46734 * 215.22170 * 11 9 7 14 14 H 1.48495 * 109.47312 * 335.21888 * 11 9 7 15 15 N 1.38231 * 119.99831 * 173.09875 * 6 3 2 16 16 C 1.46508 * 120.00226 * 185.36134 * 15 6 3 17 17 H 1.09001 * 109.46735 * 48.33227 * 16 15 6 18 18 F 1.39898 * 109.47174 * 288.33517 * 16 15 6 19 19 O 1.42892 * 109.47496 * 168.32944 * 16 15 6 20 20 C 1.35722 * 116.99756 * 60.00198 * 19 16 15 21 21 C 1.39285 * 120.12289 * 180.02562 * 20 19 16 22 22 C 1.38602 * 117.93345 * 180.02562 * 21 20 19 23 23 C 1.38911 * 117.99949 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.02489 * 179.97438 * 23 22 21 25 25 N 1.31899 * 119.94568 * 0.02562 * 23 22 21 26 26 N 1.28348 * 122.24429 * 359.70517 * 25 23 22 27 27 H 0.97000 * 120.00312 * 179.97438 * 10 9 7 28 28 H 0.96999 * 120.00502 * 5.36503 * 15 6 3 29 29 H 1.08005 * 121.03720 * 359.97438 * 21 20 19 30 30 H 1.07994 * 120.99771 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2166 0.2454 5 7 3.8521 2.1798 0.4401 6 6 3.2743 -1.1973 -0.2419 7 6 2.5875 -2.4018 -0.3374 8 1 2.7653 -3.0599 -1.1750 9 6 1.6597 -2.7642 0.6580 10 7 0.7118 -3.6167 0.3863 11 14 1.7872 -2.0229 2.3679 12 1 0.8882 -0.8449 2.4651 13 1 1.3868 -3.0357 3.3776 14 1 3.1877 -1.5990 2.6205 15 7 4.6491 -1.1725 -0.3838 16 6 5.3698 -2.3940 -0.7508 17 1 4.8781 -2.8638 -1.6027 18 9 5.3708 -3.2785 0.3331 19 8 6.7162 -2.0662 -1.0994 20 6 7.4725 -1.4700 -0.1430 21 6 8.7939 -1.1219 -0.4130 22 6 9.5249 -0.5158 0.5967 23 6 8.8946 -0.2928 1.8143 24 17 9.7611 0.4622 3.1155 25 7 7.6377 -0.6559 1.9814 26 7 6.9559 -1.2128 1.0474 27 1 0.0730 -3.8665 1.0721 28 1 5.1367 -0.3463 -0.2402 29 1 9.2355 -1.3188 -1.3787 30 1 10.5535 -0.2257 0.4413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158218192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:57 Heat of formation + Delta-G solvation = 43.044473 kcal Electronic energy + Delta-G solvation = -24143.930233 eV Core-core repulsion = 20109.611515 eV Total energy + Delta-G solvation = -4034.318718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 323.033 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.47311 -41.53711 -38.87428 -37.30867 -37.03829 -35.03149 -34.82654 -33.71070 -33.40770 -31.75944 -30.23890 -27.02713 -26.08359 -24.96465 -23.70097 -21.22715 -19.59858 -18.75925 -18.28805 -17.85017 -17.54883 -16.68570 -16.53101 -15.97183 -15.44032 -15.15916 -14.90794 -14.41200 -13.93059 -13.69814 -13.28498 -13.02049 -12.78692 -12.71319 -12.41979 -12.15753 -12.03676 -11.88387 -11.85687 -11.76838 -11.70982 -11.45556 -11.09303 -10.89985 -10.71684 -10.68988 -10.28264 -10.14490 -9.91835 -9.44126 -9.33737 -7.34647 -7.01419 -5.35616 0.31909 0.45680 1.32061 2.33476 2.36873 3.03684 3.08257 3.15335 3.28075 3.45658 3.68810 3.72876 3.89508 3.99535 4.01808 4.26689 4.31264 4.34339 4.40333 4.71423 4.83488 5.04991 5.15650 5.40993 5.42486 5.47910 6.15675 6.31008 6.48164 6.94632 7.03209 7.60116 7.86446 8.09130 8.21511 8.28386 8.76882 9.11629 9.62913 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.004490 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.580927 B = 6233.906629 C = 6637.130987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.321 3.679 3 C -0.298 4.298 4 C 0.302 3.698 5 N -0.520 5.520 6 C 0.415 3.585 7 C -0.473 4.473 8 H 0.114 0.886 9 C 0.117 3.883 10 N -0.752 5.752 11 Si 0.884 3.116 12 H -0.250 1.250 13 H -0.276 1.276 14 H -0.235 1.235 15 N -0.756 5.756 16 C 0.491 3.509 17 H 0.169 0.831 18 F -0.188 7.188 19 O -0.303 6.303 20 C 0.257 3.743 21 C -0.114 4.114 22 C -0.075 4.075 23 C 0.082 3.918 24 Cl -0.006 7.006 25 N -0.183 5.183 26 N -0.249 5.249 27 H 0.297 0.703 28 H 0.396 0.604 29 H 0.169 0.831 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.257 -1.990 -1.572 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C 0.012 3.988 3 C -0.317 4.317 4 C -0.006 4.006 5 N -0.203 5.203 6 C 0.304 3.696 7 C -0.504 4.504 8 H 0.132 0.868 9 C -0.113 4.113 10 N -0.372 5.372 11 Si 0.706 3.294 12 H -0.174 1.174 13 H -0.202 1.202 14 H -0.157 1.157 15 N -0.395 5.395 16 C 0.334 3.666 17 H 0.186 0.814 18 F -0.169 7.169 19 O -0.208 6.208 20 C 0.072 3.928 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.091 4.091 24 Cl 0.022 6.978 25 N -0.029 5.029 26 N -0.105 5.105 27 H 0.109 0.891 28 H 0.233 0.767 29 H 0.187 0.813 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 17.043 -1.037 -0.499 17.082 hybrid contribution 1.466 0.160 0.069 1.476 sum 18.509 -0.877 -0.430 18.534 Atomic orbital electron populations 1.81042 1.11958 1.08544 1.17178 1.24298 0.91120 0.92519 0.90905 1.12720 0.83678 0.86975 1.48347 1.25303 0.92791 0.92122 0.90427 1.81064 1.09717 1.10813 1.18658 1.16980 0.79922 0.91894 0.80786 1.18880 1.19074 1.02716 1.09753 0.86846 1.25947 0.90844 0.93024 1.01477 1.69402 1.07629 1.23618 1.36563 0.86564 0.83033 0.80283 0.79569 1.17365 1.20211 1.15724 1.46178 1.06156 1.10726 1.76452 1.22567 0.75905 0.80502 0.87663 0.81440 1.93049 1.95209 1.69071 1.59600 1.86744 1.25693 1.72273 1.36134 1.21622 0.90537 0.91357 0.89287 1.21621 0.91458 0.99241 1.02064 1.22106 1.02117 0.95670 0.90489 1.23426 0.93541 1.00859 0.91274 1.98425 1.72597 1.78942 1.47798 1.72845 1.03742 1.04516 1.21754 1.73585 1.27346 1.11973 0.97563 0.89130 0.76703 0.81306 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.97 18.54 41.84 0.78 -12.20 16 2 C 0.32 7.86 11.05 -22.47 -0.25 7.61 16 3 C -0.30 -6.72 4.56 -104.94 -0.48 -7.20 16 4 C 0.30 6.82 14.10 -22.49 -0.32 6.50 16 5 N -0.52 -12.03 18.53 41.81 0.77 -11.25 16 6 C 0.42 8.65 5.35 -83.60 -0.45 8.20 16 7 C -0.47 -10.30 7.62 -38.33 -0.29 -10.59 16 8 H 0.11 2.37 7.43 -52.49 -0.39 1.98 16 9 C 0.12 2.72 4.50 -17.21 -0.08 2.64 16 10 N -0.75 -17.85 13.90 55.59 0.77 -17.08 16 11 Si 0.88 19.93 25.35 -169.99 -4.31 15.62 16 12 H -0.25 -5.97 6.60 56.52 0.37 -5.59 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.24 -5.39 7.11 56.52 0.40 -4.99 16 15 N -0.76 -13.57 4.97 -62.41 -0.31 -13.88 16 16 C 0.49 7.38 4.21 59.85 0.25 7.63 16 17 H 0.17 2.06 7.40 -51.93 -0.38 1.68 16 18 F -0.19 -3.29 16.18 2.25 0.04 -3.25 16 19 O -0.30 -3.91 10.38 -18.87 -0.20 -4.11 16 20 C 0.26 3.39 6.90 -16.96 -0.12 3.27 16 21 C -0.11 -1.02 10.15 -39.06 -0.40 -1.41 16 22 C -0.07 -0.62 10.00 -39.20 -0.39 -1.01 16 23 C 0.08 0.97 7.37 -17.27 -0.13 0.84 16 24 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 25 N -0.18 -2.89 11.48 32.89 0.38 -2.51 16 26 N -0.25 -4.08 8.62 30.50 0.26 -3.82 16 27 H 0.30 6.59 8.29 -40.82 -0.34 6.25 16 28 H 0.40 7.25 6.28 -40.82 -0.26 6.99 16 29 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -29.04 309.20 -2.34 -31.39 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -1.04 Total: 1.51 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -2.64 Total: 16.48 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 2.65 Total: -60.74 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.31 Total: 15.62 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.04 -2.34 -31.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.432 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds