Wall clock time and date at job start Tue Mar 31 2020 13:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43194 * 119.99918 * 191.41119 * 3 2 1 5 5 N 3.51033 * 140.69121 * 191.41398 * 2 1 3 6 6 C 1.41150 * 119.99816 * 11.41316 * 3 2 1 7 7 C 1.38988 * 120.00363 * 353.09782 * 6 3 2 8 8 H 1.07996 * 120.00233 * 130.03920 * 7 6 3 9 9 C 1.40819 * 119.99789 * 310.03729 * 7 6 3 10 10 N 1.30342 * 120.00239 * 157.02200 * 9 7 6 11 11 Si 1.86805 * 119.99953 * 337.02611 * 9 7 6 12 12 H 1.48503 * 109.47187 * 95.22455 * 11 9 7 13 13 H 1.48509 * 109.46734 * 215.22170 * 11 9 7 14 14 H 1.48495 * 109.47312 * 335.21888 * 11 9 7 15 15 N 1.38231 * 119.99831 * 173.09875 * 6 3 2 16 16 C 1.46508 * 120.00226 * 185.36134 * 15 6 3 17 17 H 1.09001 * 109.46735 * 48.33227 * 16 15 6 18 18 F 1.39898 * 109.47174 * 288.33517 * 16 15 6 19 19 O 1.42892 * 109.47496 * 168.32944 * 16 15 6 20 20 C 1.35722 * 116.99756 * 60.00198 * 19 16 15 21 21 C 1.39285 * 120.12289 * 180.02562 * 20 19 16 22 22 C 1.38602 * 117.93345 * 180.02562 * 21 20 19 23 23 C 1.38911 * 117.99949 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.02489 * 179.97438 * 23 22 21 25 25 N 1.31899 * 119.94568 * 0.02562 * 23 22 21 26 26 N 1.28348 * 122.24429 * 359.70517 * 25 23 22 27 27 H 0.97000 * 120.00312 * 179.97438 * 10 9 7 28 28 H 0.96999 * 120.00502 * 5.36503 * 15 6 3 29 29 H 1.08005 * 121.03720 * 359.97438 * 21 20 19 30 30 H 1.07994 * 120.99771 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2166 0.2454 5 7 3.8521 2.1798 0.4401 6 6 3.2743 -1.1973 -0.2419 7 6 2.5875 -2.4018 -0.3374 8 1 2.7653 -3.0599 -1.1750 9 6 1.6597 -2.7642 0.6580 10 7 0.7118 -3.6167 0.3863 11 14 1.7872 -2.0229 2.3679 12 1 0.8882 -0.8449 2.4651 13 1 1.3868 -3.0357 3.3776 14 1 3.1877 -1.5990 2.6205 15 7 4.6491 -1.1725 -0.3838 16 6 5.3698 -2.3940 -0.7508 17 1 4.8781 -2.8638 -1.6027 18 9 5.3708 -3.2785 0.3331 19 8 6.7162 -2.0662 -1.0994 20 6 7.4725 -1.4700 -0.1430 21 6 8.7939 -1.1219 -0.4130 22 6 9.5249 -0.5158 0.5967 23 6 8.8946 -0.2928 1.8143 24 17 9.7611 0.4622 3.1155 25 7 7.6377 -0.6559 1.9814 26 7 6.9559 -1.2128 1.0474 27 1 0.0730 -3.8665 1.0721 28 1 5.1367 -0.3463 -0.2402 29 1 9.2355 -1.3188 -1.3787 30 1 10.5535 -0.2257 0.4413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158218192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:56 Heat of formation + Delta-G solvation = 20.811480 kcal Electronic energy + Delta-G solvation = -24144.894328 eV Core-core repulsion = 20109.611515 eV Total energy + Delta-G solvation = -4035.282813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 323.033 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.75705 -42.45872 -39.96001 -38.91844 -37.90221 -36.81883 -36.68356 -35.22822 -34.44871 -32.74847 -31.83381 -28.79603 -27.20297 -25.85325 -24.76814 -22.85819 -20.89483 -20.39270 -19.41322 -19.29883 -18.41054 -18.00074 -17.87753 -17.28353 -16.80669 -16.55267 -16.09502 -15.25473 -15.03231 -14.88168 -14.73748 -14.61715 -14.59811 -14.25651 -13.94221 -13.73903 -13.67220 -13.43613 -13.31411 -12.99279 -12.94748 -12.87789 -12.73684 -12.57249 -12.40213 -12.02564 -11.83636 -11.43038 -11.14480 -10.80791 -10.40653 -9.15311 -8.71811 -7.13120 -0.45330 -0.41229 0.46529 0.59696 1.26800 1.30714 1.36874 1.46899 1.85615 1.95579 2.06855 2.11438 2.20174 2.41930 2.59074 2.78013 3.19515 3.21949 3.51304 3.59867 3.65746 3.74858 4.00397 4.21308 4.34675 4.60381 4.69984 4.76209 5.20154 5.32854 5.49349 5.93443 6.13799 6.47920 6.58597 6.94946 7.21173 7.28517 7.86016 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.004490 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.580927 B = 6233.906629 C = 6637.130987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C 0.325 3.675 3 C -0.311 4.311 4 C 0.308 3.692 5 N -0.530 5.530 6 C 0.433 3.567 7 C -0.478 4.478 8 H 0.126 0.874 9 C 0.106 3.894 10 N -0.771 5.771 11 Si 0.900 3.100 12 H -0.271 1.271 13 H -0.261 1.261 14 H -0.246 1.246 15 N -0.748 5.748 16 C 0.487 3.513 17 H 0.200 0.800 18 F -0.203 7.203 19 O -0.289 6.289 20 C 0.233 3.767 21 C -0.094 4.094 22 C -0.058 4.058 23 C 0.078 3.922 24 Cl 0.003 6.997 25 N -0.235 5.235 26 N -0.297 5.297 27 H 0.302 0.698 28 H 0.395 0.605 29 H 0.214 0.786 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.960 -2.256 -2.829 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.016 3.984 3 C -0.331 4.331 4 C 0.000 4.000 5 N -0.213 5.213 6 C 0.318 3.682 7 C -0.510 4.510 8 H 0.144 0.856 9 C -0.122 4.122 10 N -0.393 5.393 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.186 1.186 14 H -0.168 1.168 15 N -0.385 5.385 16 C 0.330 3.670 17 H 0.216 0.784 18 F -0.185 7.185 19 O -0.194 6.194 20 C 0.048 3.952 21 C -0.123 4.123 22 C -0.086 4.086 23 C -0.097 4.097 24 Cl 0.031 6.969 25 N -0.080 5.080 26 N -0.152 5.152 27 H 0.114 0.886 28 H 0.232 0.768 29 H 0.231 0.769 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 19.776 -1.320 -1.738 19.897 hybrid contribution 0.825 0.305 0.481 1.003 sum 20.602 -1.015 -1.257 20.665 Atomic orbital electron populations 1.81025 1.12737 1.09312 1.18517 1.24595 0.91528 0.91882 0.90350 1.12843 0.83060 0.87708 1.49441 1.25268 0.92591 0.91981 0.90152 1.81057 1.10041 1.10974 1.19188 1.16849 0.81009 0.90958 0.79335 1.18985 1.18963 1.03033 1.10013 0.85624 1.26117 0.91010 0.93086 1.02030 1.69401 1.08215 1.24575 1.37064 0.86355 0.81703 0.79658 0.80046 1.19672 1.18582 1.16835 1.46203 1.05163 1.11985 1.75138 1.23033 0.77094 0.79098 0.87770 0.78405 1.93018 1.95451 1.69386 1.60640 1.86761 1.24433 1.72514 1.35712 1.22042 0.92186 0.92169 0.88849 1.22153 0.89335 0.97000 1.03808 1.22648 1.03801 0.93714 0.88425 1.23799 0.92941 1.00123 0.92818 1.98427 1.71944 1.78686 1.47844 1.72665 1.05902 1.06745 1.22682 1.73370 1.29090 1.13781 0.98944 0.88603 0.76795 0.76874 0.76661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.53 18.54 19.00 0.35 -27.18 16 2 C 0.32 15.94 11.05 88.33 0.98 16.91 16 3 C -0.31 -13.94 4.56 -20.07 -0.09 -14.03 16 4 C 0.31 13.84 14.10 88.34 1.25 15.08 16 5 N -0.53 -24.29 18.53 19.00 0.35 -23.93 16 6 C 0.43 17.68 5.35 39.03 0.21 17.88 16 7 C -0.48 -20.35 7.62 23.08 0.18 -20.17 16 8 H 0.13 5.03 7.43 -2.91 -0.02 5.00 16 9 C 0.11 4.88 4.50 85.55 0.38 5.26 16 10 N -0.77 -36.19 13.90 21.98 0.31 -35.88 16 11 Si 0.90 40.54 25.35 68.60 1.74 42.28 16 12 H -0.27 -13.19 6.60 99.48 0.66 -12.53 16 13 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.25 -11.38 7.11 99.48 0.71 -10.67 16 15 N -0.75 -26.06 4.97 -451.82 -2.24 -28.30 16 16 C 0.49 13.80 4.21 127.77 0.54 14.34 16 17 H 0.20 4.35 7.40 -2.39 -0.02 4.33 16 18 F -0.20 -6.95 16.18 44.97 0.73 -6.22 16 19 O -0.29 -6.79 10.38 -90.44 -0.94 -7.72 16 20 C 0.23 5.68 6.90 84.88 0.59 6.26 16 21 C -0.09 -1.30 10.15 22.61 0.23 -1.07 16 22 C -0.06 -0.74 10.00 22.52 0.23 -0.51 16 23 C 0.08 1.70 7.37 84.84 0.62 2.33 16 24 Cl 0.00 0.06 29.13 -2.72 -0.08 -0.02 16 25 N -0.24 -7.37 11.48 -49.84 -0.57 -7.94 16 26 N -0.30 -9.60 8.62 -170.22 -1.47 -11.06 16 27 H 0.30 13.30 8.29 -92.71 -0.77 12.53 16 28 H 0.40 14.17 6.28 -92.71 -0.58 13.59 16 29 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.22 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -64.18 309.20 3.91 -60.27 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 0.63 Total: 3.44 kcal Atomic # 6 Polarization: 37.18 SS G_CDS: 5.10 Total: 42.28 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -3.27 Total: -134.31 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.94 Total: -7.72 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.73 Total: -6.22 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.74 Total: 42.28 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -64.18 3.91 -60.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.079 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds