Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00574 * 3 2 1 5 5 H 1.48504 * 109.47050 * 30.00470 * 3 2 1 6 6 H 1.48499 * 109.47051 * 150.00530 * 3 2 1 7 7 C 1.37880 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99172 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00437 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47252 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00105 * 165.00089 * 10 9 7 12 12 O 1.42095 * 106.40256 * 311.45872 * 11 10 9 13 13 O 1.42103 * 106.40123 * 178.54056 * 11 10 9 14 14 C 1.76200 * 107.21811 * 65.00123 * 11 10 9 15 15 C 1.38355 * 119.85463 * 269.98067 * 14 11 10 16 16 C 1.37961 * 120.14913 * 180.02562 * 15 14 11 17 17 C 1.39575 * 119.84743 * 359.97438 * 16 15 14 18 18 C 1.47836 * 120.14006 * 179.97438 * 17 16 15 19 19 C 1.34784 * 125.27068 * 179.72498 * 18 17 16 20 20 C 1.37963 * 114.71006 * 179.79282 * 19 18 17 21 21 C 1.33619 * 115.05989 * 0.49669 * 20 19 18 22 22 S 1.75863 * 109.75840 * 359.73155 * 21 20 19 23 23 C 1.39569 * 119.71570 * 0.02562 * 17 16 15 24 24 C 1.37965 * 119.85208 * 0.02562 * 23 17 16 25 25 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46709 * 59.99804 * 9 7 2 27 27 H 1.08998 * 109.47039 * 300.00072 * 9 7 2 28 28 H 0.97004 * 120.00158 * 344.99919 * 10 9 7 29 29 H 1.08000 * 119.92359 * 0.03862 * 15 14 11 30 30 H 1.07993 * 120.07603 * 180.27506 * 16 15 14 31 31 H 1.08008 * 122.64848 * 359.97253 * 19 18 17 32 32 H 1.07994 * 122.47337 * 180.23239 * 20 19 18 33 33 H 1.07995 * 125.12365 * 179.75508 * 21 20 19 34 34 H 1.07993 * 120.07098 * 179.97438 * 23 17 16 35 35 H 1.08002 * 119.92386 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 16 5.5818 -2.8942 -0.3727 12 8 5.8658 -2.1776 -1.5664 13 8 5.7465 -4.3005 -0.2525 14 6 6.5713 -2.1675 0.8912 15 6 7.0157 -0.8644 0.7543 16 6 7.7912 -0.2896 1.7399 17 6 8.1268 -1.0256 2.8774 18 6 8.9580 -0.4162 3.9373 19 6 9.3380 -1.0280 5.0766 20 6 10.1175 -0.2562 5.9133 21 6 10.3677 0.9803 5.4729 22 16 9.5980 1.2219 3.9102 23 6 7.6753 -2.3396 3.0093 24 6 6.9013 -2.9028 2.0157 25 1 -0.4850 0.8400 0.0004 26 1 3.8751 -0.6803 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3966 -3.3029 0.2168 29 1 6.7547 -0.2959 -0.1261 30 1 8.1337 0.7291 1.6338 31 1 9.0570 -2.0434 5.3144 32 1 10.4940 -0.6228 6.8567 33 1 10.9545 1.7198 5.9973 34 1 7.9319 -2.9144 3.8868 35 1 6.5509 -3.9194 2.1168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194133077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = -15.358691 kcal Electronic energy + Delta-G solvation = -21695.887305 eV Core-core repulsion = 18298.540511 eV Total energy + Delta-G solvation = -3397.346795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55559 -37.77693 -36.86625 -35.47959 -34.80005 -32.64716 -32.23242 -31.24639 -28.55746 -27.41588 -24.92906 -23.07710 -22.50370 -22.05967 -19.37684 -19.25161 -18.34805 -17.77487 -17.22916 -16.17275 -16.04760 -15.76698 -15.14265 -15.01627 -14.45728 -14.24531 -13.89826 -13.73266 -13.50130 -13.09066 -12.96323 -12.74438 -12.57341 -12.52815 -12.40281 -12.05047 -11.75585 -11.67473 -11.47488 -10.98506 -10.94299 -10.76866 -10.57839 -10.17854 -10.01170 -9.56118 -9.17950 -8.93743 -8.85416 -8.55437 -8.42821 -6.21893 -4.23456 -0.02692 0.81948 1.20741 1.21142 1.22290 1.62588 2.40869 3.21589 3.27782 3.28925 3.36995 3.64621 4.11886 4.23119 4.28802 4.46735 4.67095 4.75201 4.81938 5.07541 5.11254 5.12044 5.19933 5.38356 5.47444 5.66543 5.79259 5.81562 5.99778 6.03470 6.08019 6.13534 6.22924 6.66737 6.80227 6.87881 7.35588 7.78597 8.33835 8.79741 9.35920 10.90475 Molecular weight = 323.04amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003947 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.784733 B = 7092.755490 C = 8506.317625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.870 3.130 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.083 0.917 9 C 0.216 3.784 10 N -1.094 6.094 11 S 2.690 3.310 12 O -0.961 6.961 13 O -0.973 6.973 14 C -0.669 4.669 15 C -0.010 4.010 16 C -0.136 4.136 17 C 0.031 3.969 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.214 4.214 22 S 0.129 5.871 23 C -0.127 4.127 24 C -0.012 4.012 25 H 0.268 0.732 26 H 0.020 0.980 27 H 0.032 0.968 28 H 0.417 0.583 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.134 0.866 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.711 0.292 10.971 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.101 0.899 9 C 0.092 3.908 10 N -0.857 5.857 11 S 2.778 3.222 12 O -0.951 6.951 13 O -0.963 6.963 14 C -0.755 4.755 15 C -0.029 4.029 16 C -0.156 4.156 17 C 0.029 3.971 18 C -0.269 4.269 19 C -0.151 4.151 20 C -0.165 4.165 21 C -0.350 4.350 22 S 0.396 5.604 23 C -0.148 4.148 24 C -0.031 4.031 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.252 0.748 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.941 1.390 9.228 22.927 hybrid contribution 0.309 -0.006 1.923 1.948 sum 21.251 1.384 11.151 24.038 Atomic orbital electron populations 1.69870 1.06167 1.27337 1.49497 1.24849 0.94819 0.99014 0.94148 0.86928 0.80507 0.83722 0.79181 1.19510 1.20781 1.18707 1.21033 0.88039 0.95264 1.52709 0.89885 1.19473 0.97763 0.77309 0.96277 1.55227 1.25748 1.16992 1.87687 1.01906 0.73140 0.73038 0.74159 1.93566 1.84586 1.74447 1.42485 1.93543 1.86124 1.29463 1.87168 1.31307 1.19522 1.06205 1.18442 1.20896 0.91625 0.92467 0.97889 1.21272 1.00457 0.99969 0.93862 1.18286 0.93635 0.93553 0.91613 1.23066 1.06305 0.98164 0.99363 1.20408 0.99754 1.01736 0.93247 1.20094 1.01033 0.93711 1.01680 1.25830 1.07605 1.01502 1.00030 1.84300 1.47373 1.10976 1.17795 1.21224 0.99572 0.94143 0.99823 1.20852 0.92637 0.99135 0.90479 0.92249 0.96268 0.95022 0.74795 0.83687 0.85256 0.83768 0.83916 0.81587 0.84820 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.53 -14.28 9.83 -34.44 -0.34 -14.62 16 8 H 0.08 2.36 7.90 -52.49 -0.41 1.95 16 9 C 0.22 4.91 5.04 -5.20 -0.03 4.88 16 10 N -1.09 -20.99 5.99 -11.66 -0.07 -21.06 16 11 S 2.69 47.27 5.73 -107.50 -0.62 46.65 16 12 O -0.96 -19.30 16.74 -57.17 -0.96 -20.26 16 13 O -0.97 -17.86 17.27 -57.17 -0.99 -18.85 16 14 C -0.67 -10.37 5.95 -39.49 -0.24 -10.61 16 15 C -0.01 -0.14 9.50 -39.64 -0.38 -0.52 16 16 C -0.14 -1.81 9.60 -39.18 -0.38 -2.19 16 17 C 0.03 0.39 5.87 -104.98 -0.62 -0.22 16 18 C -0.15 -1.66 6.37 -36.88 -0.24 -1.90 16 19 C -0.12 -1.11 9.65 -40.91 -0.39 -1.51 16 20 C -0.14 -1.07 10.16 -41.30 -0.42 -1.49 16 21 C -0.21 -1.67 11.22 29.11 0.33 -1.35 16 22 S 0.13 1.22 22.26 -107.50 -2.39 -1.17 16 23 C -0.13 -1.52 9.54 -39.19 -0.37 -1.89 16 24 C -0.01 -0.16 9.50 -39.64 -0.38 -0.54 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 27 H 0.03 0.73 7.18 -51.93 -0.37 0.35 16 28 H 0.42 7.43 8.54 -34.47 -0.29 7.14 16 29 H 0.15 2.08 7.60 -52.49 -0.40 1.68 16 30 H 0.13 1.47 7.28 -52.49 -0.38 1.08 16 31 H 0.14 1.07 6.89 -52.48 -0.36 0.71 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.19 6.76 -52.49 -0.35 0.83 16 35 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -32.95 329.27 -10.86 -43.81 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.36 Total: 5.56 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -3.54 Total: -29.95 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.70 Total: -46.45 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.94 Total: -39.11 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -3.01 Total: 45.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.95 -10.86 -43.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194133077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.453 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds