Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00574 * 3 2 1 5 5 H 1.48504 * 109.47050 * 30.00470 * 3 2 1 6 6 H 1.48499 * 109.47051 * 150.00530 * 3 2 1 7 7 C 1.37880 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99172 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00437 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47252 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00105 * 165.00089 * 10 9 7 12 12 O 1.42095 * 106.40256 * 311.45872 * 11 10 9 13 13 O 1.42103 * 106.40123 * 178.54056 * 11 10 9 14 14 C 1.76200 * 107.21811 * 65.00123 * 11 10 9 15 15 C 1.38355 * 119.85463 * 269.98067 * 14 11 10 16 16 C 1.37961 * 120.14913 * 180.02562 * 15 14 11 17 17 C 1.39575 * 119.84743 * 359.97438 * 16 15 14 18 18 C 1.47836 * 120.14006 * 179.97438 * 17 16 15 19 19 C 1.34784 * 125.27068 * 179.72498 * 18 17 16 20 20 C 1.37963 * 114.71006 * 179.79282 * 19 18 17 21 21 C 1.33619 * 115.05989 * 0.49669 * 20 19 18 22 22 S 1.75863 * 109.75840 * 359.73155 * 21 20 19 23 23 C 1.39569 * 119.71570 * 0.02562 * 17 16 15 24 24 C 1.37965 * 119.85208 * 0.02562 * 23 17 16 25 25 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46709 * 59.99804 * 9 7 2 27 27 H 1.08998 * 109.47039 * 300.00072 * 9 7 2 28 28 H 0.97004 * 120.00158 * 344.99919 * 10 9 7 29 29 H 1.08000 * 119.92359 * 0.03862 * 15 14 11 30 30 H 1.07993 * 120.07603 * 180.27506 * 16 15 14 31 31 H 1.08008 * 122.64848 * 359.97253 * 19 18 17 32 32 H 1.07994 * 122.47337 * 180.23239 * 20 19 18 33 33 H 1.07995 * 125.12365 * 179.75508 * 21 20 19 34 34 H 1.07993 * 120.07098 * 179.97438 * 23 17 16 35 35 H 1.08002 * 119.92386 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 16 5.5818 -2.8942 -0.3727 12 8 5.8658 -2.1776 -1.5664 13 8 5.7465 -4.3005 -0.2525 14 6 6.5713 -2.1675 0.8912 15 6 7.0157 -0.8644 0.7543 16 6 7.7912 -0.2896 1.7399 17 6 8.1268 -1.0256 2.8774 18 6 8.9580 -0.4162 3.9373 19 6 9.3380 -1.0280 5.0766 20 6 10.1175 -0.2562 5.9133 21 6 10.3677 0.9803 5.4729 22 16 9.5980 1.2219 3.9102 23 6 7.6753 -2.3396 3.0093 24 6 6.9013 -2.9028 2.0157 25 1 -0.4850 0.8400 0.0004 26 1 3.8751 -0.6803 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3966 -3.3029 0.2168 29 1 6.7547 -0.2959 -0.1261 30 1 8.1337 0.7291 1.6338 31 1 9.0570 -2.0434 5.3144 32 1 10.4940 -0.6228 6.8567 33 1 10.9545 1.7198 5.9973 34 1 7.9319 -2.9144 3.8868 35 1 6.5509 -3.9194 2.1168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194133077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = -37.859971 kcal Electronic energy + Delta-G solvation = -21696.863034 eV Core-core repulsion = 18298.540511 eV Total energy + Delta-G solvation = -3398.322523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49137 -38.48337 -38.34350 -36.96613 -36.54869 -34.25141 -33.54418 -32.23954 -29.34948 -29.34248 -25.71020 -24.16642 -23.87696 -23.38266 -20.71077 -20.03223 -19.52905 -19.13492 -18.46428 -17.89837 -17.31986 -16.83102 -16.39429 -16.02660 -15.83132 -15.33713 -15.15282 -14.84547 -14.66767 -14.64363 -14.46605 -13.78931 -13.64024 -13.62922 -13.38524 -13.25218 -13.21024 -13.14636 -12.75993 -12.46111 -12.38435 -11.93587 -11.87067 -11.66947 -11.63362 -11.07757 -10.89313 -10.30776 -10.17919 -9.52643 -9.23512 -8.33637 -6.40460 -0.92071 -0.54218 0.20648 0.36451 0.54505 0.98741 1.37502 1.39154 1.47994 1.72477 2.09358 2.32475 2.49400 2.77853 3.01286 3.29335 3.40269 3.72028 3.79095 4.14834 4.19463 4.27045 4.40830 4.48274 4.49736 4.63935 4.83355 4.94234 4.97274 5.01549 5.02604 5.05531 5.22680 5.31134 5.40084 5.48922 5.68707 6.18063 6.23969 6.65884 7.23056 8.81953 Molecular weight = 323.04amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003947 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.784733 B = 7092.755490 C = 8506.317625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.018 3.982 3 Si 0.930 3.070 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.237 1.237 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.224 3.776 10 N -1.100 6.100 11 S 2.707 3.293 12 O -0.990 6.990 13 O -0.982 6.982 14 C -0.684 4.684 15 C -0.027 4.027 16 C -0.146 4.146 17 C 0.038 3.962 18 C -0.188 4.188 19 C -0.108 4.108 20 C -0.145 4.145 21 C -0.200 4.200 22 S 0.108 5.892 23 C -0.127 4.127 24 C -0.017 4.017 25 H 0.270 0.730 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.420 0.580 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.168 0.832 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.604 1.150 13.473 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.752 3.248 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.160 1.160 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.098 3.902 10 N -0.860 5.860 11 S 2.799 3.201 12 O -0.981 6.981 13 O -0.973 6.973 14 C -0.773 4.773 15 C -0.046 4.046 16 C -0.166 4.166 17 C 0.036 3.964 18 C -0.305 4.305 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.335 4.335 22 S 0.374 5.626 23 C -0.147 4.147 24 C -0.037 4.037 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.255 0.745 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.188 0.812 33 H 0.210 0.790 34 H 0.185 0.815 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 23.816 2.210 11.694 26.624 hybrid contribution -0.464 -0.321 1.309 1.426 sum 23.352 1.889 13.003 26.794 Atomic orbital electron populations 1.70011 1.08063 1.28510 1.51196 1.25761 0.95626 1.03055 0.93741 0.85967 0.80209 0.78824 0.79783 1.18879 1.20254 1.16027 1.21332 0.90394 0.94229 1.52040 0.93088 1.19240 0.94959 0.79230 0.96787 1.55147 1.27027 1.15820 1.88055 1.01107 0.72423 0.72559 0.73987 1.93519 1.84746 1.74921 1.44880 1.93520 1.86056 1.30212 1.87507 1.30790 1.20848 1.06944 1.18739 1.21007 0.92563 0.92465 0.98558 1.21461 1.00400 1.00844 0.93883 1.18557 0.92673 0.93696 0.91515 1.23051 1.08240 0.99134 1.00056 1.20791 0.98253 1.02533 0.92335 1.20425 1.00837 0.93558 1.02613 1.26242 1.06464 1.02115 0.98711 1.84380 1.47952 1.10761 1.19493 1.21582 0.98590 0.94197 1.00349 1.21134 0.92708 0.99726 0.90113 0.92053 0.94816 0.95000 0.74450 0.83896 0.83884 0.81941 0.81179 0.78999 0.81494 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 2 C 0.02 0.99 5.47 84.66 0.46 1.45 16 3 Si 0.93 41.52 27.47 68.60 1.88 43.40 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.54 -29.73 9.83 25.60 0.25 -29.48 16 8 H 0.05 3.04 7.90 -2.91 -0.02 3.02 16 9 C 0.22 10.12 5.04 85.63 0.43 10.55 16 10 N -1.10 -42.65 5.99 -190.81 -1.14 -43.79 16 11 S 2.71 95.36 5.73 -56.49 -0.32 95.03 16 12 O -0.99 -40.25 16.74 -128.00 -2.14 -42.39 16 13 O -0.98 -35.94 17.27 -128.00 -2.21 -38.15 16 14 C -0.68 -20.68 5.95 22.33 0.13 -20.54 16 15 C -0.03 -0.78 9.50 22.23 0.21 -0.57 16 16 C -0.15 -3.71 9.60 22.53 0.22 -3.49 16 17 C 0.04 0.86 5.87 -20.09 -0.12 0.75 16 18 C -0.19 -3.61 6.37 24.02 0.15 -3.46 16 19 C -0.11 -1.58 9.65 21.41 0.21 -1.38 16 20 C -0.14 -1.69 10.16 21.16 0.21 -1.47 16 21 C -0.20 -2.38 11.22 66.77 0.75 -1.63 16 22 S 0.11 1.80 22.26 -56.49 -1.26 0.54 16 23 C -0.13 -2.70 9.54 22.53 0.21 -2.48 16 24 C -0.02 -0.44 9.50 22.23 0.21 -0.23 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 27 H 0.03 1.45 7.18 -2.39 -0.02 1.44 16 28 H 0.42 15.41 8.54 -96.74 -0.83 14.58 16 29 H 0.14 4.09 7.60 -2.91 -0.02 4.06 16 30 H 0.14 3.08 7.28 -2.91 -0.02 3.06 16 31 H 0.16 1.68 6.89 -2.91 -0.02 1.66 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.17 2.30 6.76 -2.91 -0.02 2.28 16 35 H 0.16 3.43 7.60 -2.91 -0.02 3.41 16 Total: -1.00 -71.77 329.27 -1.30 -73.07 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.26 Total: 20.46 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 3.34 Total: -51.98 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -0.84 Total: -99.99 kcal Atomic # 8 Polarization: -76.19 SS G_CDS: -4.35 Total: -80.54 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 97.16 SS G_CDS: -1.58 Total: 95.58 kcal Total: -71.77 -1.30 -73.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194133077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.205 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds