Wall clock time and date at job start Tue Mar 31 2020 13:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99555 * 2 1 4 4 C 1.50703 * 109.47048 * 66.04898 * 3 2 1 5 5 H 1.08000 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99716 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00355 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46995 * 90.00231 * 8 6 4 10 10 H 1.48501 * 109.46972 * 209.99784 * 8 6 4 11 11 H 1.48497 * 109.47473 * 330.00045 * 8 6 4 12 12 C 1.46904 * 111.00231 * 236.05299 * 2 1 3 13 13 C 1.50706 * 109.46698 * 293.94673 * 12 2 1 14 14 C 1.35117 * 126.40662 * 95.02709 * 13 12 2 15 15 N 1.33503 * 108.61785 * 180.02562 * 14 13 12 16 16 C 1.32553 * 109.15902 * 359.97438 * 15 14 13 17 17 C 1.41007 * 132.32451 * 179.97438 * 16 15 14 18 18 Br 1.89103 * 120.34722 * 359.97438 * 17 16 15 19 19 C 1.36102 * 119.31309 * 180.02562 * 17 16 15 20 20 C 1.40467 * 119.68241 * 0.02562 * 19 17 16 21 21 C 1.34946 * 120.30951 * 359.97438 * 20 19 17 22 22 N 1.36518 * 120.62705 * 359.74905 * 21 20 19 23 23 H 1.09003 * 109.46531 * 183.94802 * 1 2 3 24 24 H 1.08991 * 109.47260 * 303.95042 * 1 2 3 25 25 H 1.08998 * 109.47146 * 63.95891 * 1 2 3 26 26 H 1.09010 * 109.46971 * 186.04610 * 3 2 1 27 27 H 1.08997 * 109.47531 * 306.04432 * 3 2 1 28 28 H 0.97002 * 119.99705 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47113 * 173.95150 * 12 2 1 30 30 H 1.08998 * 109.47330 * 53.94975 * 12 2 1 31 31 H 1.08001 * 125.69230 * 359.97438 * 14 13 12 32 32 H 1.07999 * 120.15841 * 180.02562 * 19 17 16 33 33 H 1.08000 * 119.84843 * 179.97438 * 20 19 17 34 34 H 1.08000 * 119.68460 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0275 3.3492 1.5289 7 7 2.7134 4.0014 0.6158 8 14 1.5824 4.1868 3.1382 9 1 2.6586 3.9498 4.1337 10 1 1.4310 5.6465 2.9110 11 1 0.3041 3.6301 3.6491 12 6 1.9955 -0.7658 -1.1377 13 6 1.6371 -2.2204 -0.9729 14 6 0.5663 -2.8479 -1.5071 15 7 0.5938 -4.1296 -1.1345 16 6 1.6587 -4.3387 -0.3734 17 6 2.1530 -5.4907 0.2722 18 35 1.2350 -7.1373 0.1234 19 6 3.2970 -5.4051 1.0045 20 6 3.9668 -4.1747 1.1070 21 6 3.4813 -3.0810 0.4833 22 7 2.3379 -3.1537 -0.2590 23 1 -0.3632 -1.0253 0.0708 24 1 -0.3633 0.5739 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9886 4.9173 0.7782 29 1 3.0798 -0.6609 -1.1757 30 1 1.5611 -0.3871 -2.0629 31 1 -0.1866 -2.3891 -2.1308 32 1 3.6879 -6.2791 1.5043 33 1 4.8746 -4.1037 1.6877 34 1 4.0047 -2.1401 0.5686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233468931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:21 Heat of formation + Delta-G solvation = 81.012402 kcal Electronic energy + Delta-G solvation = -18884.867754 eV Core-core repulsion = 15864.768411 eV Total energy + Delta-G solvation = -3020.099342 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.033 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.89218 -38.77543 -38.02040 -35.18345 -34.63076 -32.19190 -31.57749 -29.98055 -29.00492 -27.98533 -25.73569 -24.40200 -23.58044 -22.59086 -21.60260 -18.67344 -18.24217 -17.88002 -17.27681 -16.83801 -16.65309 -16.07166 -15.72580 -15.43293 -15.32841 -14.61111 -14.14324 -13.73160 -13.63164 -13.35038 -13.20242 -12.89334 -12.83953 -12.78938 -12.60682 -12.55086 -12.31651 -11.93799 -11.39154 -11.33292 -11.09381 -11.07765 -10.61786 -9.82792 -9.13737 -8.78450 -8.20944 -6.30551 -0.44419 0.20004 0.42084 1.41735 1.42152 1.53207 1.62614 1.79828 2.35533 2.40274 3.10530 3.11933 3.35388 3.54696 3.69649 3.87630 4.01870 4.13067 4.33848 4.44914 4.59189 4.59574 4.68755 4.78727 4.92281 5.01830 5.08115 5.18085 5.26681 5.42937 5.53742 5.63276 5.98330 6.01889 6.24910 6.54453 6.74444 6.84653 7.39106 8.89380 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.027309 B = 0.003042 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.045460 B = 9202.408432 C = 9486.120776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.545 5.545 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.007 3.993 7 N -0.931 5.931 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.133 3.867 13 C -0.043 4.043 14 C 0.028 3.972 15 N -0.511 5.511 16 C 0.214 3.786 17 C -0.095 4.095 18 Br -0.011 7.011 19 C -0.039 4.039 20 C -0.137 4.137 21 C 0.071 3.929 22 N -0.356 5.356 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.012 0.988 27 H -0.031 1.031 28 H 0.265 0.735 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.195 0.805 32 H 0.185 0.815 33 H 0.201 0.799 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -22.111 -0.285 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.269 5.269 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.004 3.996 13 C -0.157 4.157 14 C -0.123 4.123 15 N -0.231 5.231 16 C -0.031 4.031 17 C -0.177 4.177 18 Br 0.074 6.926 19 C -0.065 4.065 20 C -0.158 4.158 21 C -0.052 4.052 22 N -0.028 5.028 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.030 0.970 27 H -0.013 1.013 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.211 0.789 32 H 0.203 0.797 33 H 0.218 0.782 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.014 -23.289 -0.215 23.377 hybrid contribution 0.181 2.304 -0.034 2.312 sum 2.195 -20.985 -0.249 21.100 Atomic orbital electron populations 1.22141 0.87596 1.00500 1.00142 1.62060 1.08358 1.15508 1.40983 1.19404 0.94036 0.83070 0.95180 1.21409 1.34874 0.97474 1.02351 0.92339 1.25809 0.95032 0.97959 1.00370 1.70061 1.39210 1.11969 1.35929 0.85459 0.78872 0.77352 0.79401 1.19771 1.20827 1.19273 1.20353 1.00475 0.85405 0.93338 1.21197 0.97716 0.92445 1.04293 1.22605 0.97895 0.89536 1.02236 1.70733 1.18420 1.17801 1.16114 1.20594 0.92627 0.87243 1.02627 1.20766 1.00189 0.90653 1.06106 1.96694 1.77451 1.20726 1.97763 1.21619 0.90776 1.00304 0.93754 1.21325 1.03205 0.89704 1.01587 1.22386 0.86483 1.03038 0.93277 1.42753 1.18159 1.09675 1.32211 0.91882 0.92631 0.96026 0.96994 1.01318 0.92640 0.90296 0.91868 0.78857 0.79729 0.78184 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.14 127.69 1.17 2.88 16 2 N -0.54 -22.41 4.74 -931.63 -4.42 -26.83 16 3 C 0.21 10.52 4.72 85.56 0.40 10.93 16 4 C -0.52 -28.61 8.46 25.60 0.22 -28.39 16 5 H 0.06 3.19 7.12 -2.91 -0.02 3.17 16 6 C 0.01 0.37 5.46 84.66 0.46 0.83 16 7 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 8 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 C 0.13 4.49 5.40 85.56 0.46 4.95 16 13 C -0.04 -1.37 5.77 41.06 0.24 -1.13 16 14 C 0.03 0.88 10.74 83.72 0.90 1.78 16 15 N -0.51 -17.14 11.31 -194.31 -2.20 -19.34 16 16 C 0.21 6.58 7.59 134.13 1.02 7.59 16 17 C -0.09 -2.31 6.25 22.45 0.14 -2.17 16 18 Br -0.01 -0.25 33.73 -20.37 -0.69 -0.94 16 19 C -0.04 -0.65 9.80 22.32 0.22 -0.44 16 20 C -0.14 -2.17 9.98 22.06 0.22 -1.95 16 21 C 0.07 1.64 10.85 83.21 0.90 2.54 16 22 N -0.36 -10.58 2.95 -338.81 -1.00 -11.58 16 23 H 0.06 2.22 6.55 -2.39 -0.02 2.20 16 24 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.01 0.64 7.93 -2.38 -0.02 0.62 16 27 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.08 2.58 7.93 -2.38 -0.02 2.56 16 30 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 31 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -67.49 312.26 1.46 -66.02 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.11 Total: 3.86 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 6.35 Total: -2.57 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -7.33 Total: -111.56 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -67.49 1.46 -66.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233468931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.036 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds