Wall clock time and date at job start Tue Mar 31 2020 13:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47375 * 300.00192 * 3 2 1 6 6 H 1.48506 * 109.46808 * 60.00401 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 O 1.42902 * 109.47077 * 270.01897 * 14 13 12 16 16 C 1.35979 * 116.99549 * 179.97438 * 15 14 13 17 17 C 1.38552 * 120.45608 * 0.02562 * 16 15 14 18 18 N 1.31930 * 120.73963 * 179.97438 * 17 16 15 19 19 C 1.32037 * 121.76645 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.58549 * 180.02562 * 19 18 17 21 21 C 1.38480 * 120.83325 * 359.97438 * 19 18 17 22 22 C 1.38619 * 119.17853 * 359.79242 * 21 19 18 23 23 Cl 1.73598 * 120.80946 * 180.23491 * 22 21 19 24 24 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 25 25 C 1.38105 * 120.06695 * 359.97438 * 24 13 12 26 26 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 28 28 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 29 29 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 30 30 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 31 31 H 1.08005 * 119.62698 * 359.97438 * 17 16 15 32 32 H 1.07999 * 120.41067 * 180.02562 * 21 19 18 33 33 H 1.08001 * 119.96675 * 179.97438 * 24 13 12 34 34 H 1.07996 * 120.03107 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 8 4.6499 -7.3501 1.8188 16 6 5.3806 -8.4614 2.1019 17 6 5.8368 -9.2806 1.0818 18 7 6.5465 -10.3599 1.3501 19 6 6.8500 -10.7022 2.5886 20 9 7.5799 -11.8167 2.8128 21 6 6.4304 -9.9327 3.6608 22 6 5.6864 -8.7879 3.4208 23 17 5.1438 -7.7889 4.7328 24 6 4.2024 -4.5972 0.2002 25 6 3.4571 -3.4396 0.0917 26 1 -0.4850 0.8401 0.0004 27 1 0.3580 -4.7873 0.2491 28 1 1.6955 -6.8451 0.4322 29 1 3.8311 -7.9148 0.0080 30 1 5.3272 -6.9559 -0.0928 31 1 5.6088 -9.0327 0.0556 32 1 6.6828 -10.2188 4.6711 33 1 5.2812 -4.5472 0.1899 34 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340938034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:33 Heat of formation + Delta-G solvation = -63.451509 kcal Electronic energy + Delta-G solvation = -22850.904445 eV Core-core repulsion = 18883.215306 eV Total energy + Delta-G solvation = -3967.689138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.051 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.09334 -41.84331 -40.81171 -39.40157 -38.07705 -37.81254 -34.38359 -33.57137 -32.24913 -31.81564 -30.79531 -27.86481 -26.80545 -24.95568 -24.26077 -23.67286 -22.19042 -19.89987 -19.63681 -19.09990 -19.01101 -18.68622 -17.44289 -16.86433 -16.56406 -16.24048 -16.06084 -15.95642 -15.82042 -15.54822 -15.19265 -14.88053 -14.60030 -14.41118 -14.36550 -14.14295 -13.85388 -13.56578 -13.25539 -13.03710 -12.59210 -12.47498 -12.21886 -12.15806 -12.09921 -12.07874 -11.19848 -10.97498 -10.82222 -10.71703 -9.81134 -9.50398 -9.04761 -8.49559 -6.17815 -0.37826 -0.27799 0.47350 0.58536 0.77556 1.35387 1.42404 1.53389 2.00231 2.16384 2.25081 2.45440 2.84826 3.14467 3.24100 3.45009 3.50150 3.72681 3.87677 3.96271 4.07252 4.17515 4.30302 4.34100 4.39310 4.52541 4.57747 4.76611 5.01886 5.12848 5.19573 5.25216 5.51522 5.68417 5.70566 6.00604 6.03076 6.16351 6.35552 6.95364 7.74343 8.73498 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.002346 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.612020 B =11932.743455 C =12284.908965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.124 3.876 11 C -0.210 4.210 12 C -0.040 4.040 13 C -0.179 4.179 14 C 0.110 3.890 15 O -0.302 6.302 16 C 0.085 3.915 17 C 0.071 3.929 18 N -0.491 5.491 19 C 0.266 3.734 20 F -0.111 7.111 21 C -0.134 4.134 22 C -0.020 4.020 23 Cl -0.028 7.028 24 C -0.042 4.042 25 C -0.248 4.248 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.152 0.848 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.207 0.793 32 H 0.187 0.813 33 H 0.144 0.856 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.221 -19.188 4.885 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.073 3.927 11 C -0.229 4.229 12 C -0.058 4.058 13 C -0.180 4.180 14 C 0.037 3.963 15 O -0.214 6.214 16 C 0.035 3.965 17 C -0.087 4.087 18 N -0.206 5.206 19 C 0.113 3.887 20 F -0.091 7.091 21 C -0.156 4.156 22 C -0.055 4.055 23 Cl 0.001 6.999 24 C -0.060 4.060 25 C -0.268 4.268 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.170 0.830 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.224 0.776 32 H 0.204 0.796 33 H 0.162 0.838 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.984 -19.322 4.447 24.263 hybrid contribution -0.301 1.382 0.676 1.567 sum 13.684 -17.941 5.123 23.138 Atomic orbital electron populations 1.70184 1.08038 1.28829 1.48609 1.26594 0.96842 1.02778 0.95780 0.84531 0.78323 0.74843 0.78545 1.17352 1.19295 1.19484 1.21879 0.92584 0.81321 1.53138 0.87887 1.83948 1.36111 1.12696 1.80736 1.20030 0.91710 0.87987 0.93005 1.20472 1.00161 0.90511 1.11745 1.20947 0.93190 0.97202 0.94447 1.19233 0.93312 0.93966 1.11443 1.21810 1.00180 0.95344 0.78964 1.86371 1.66243 1.38521 1.30305 1.19933 0.94126 0.89469 0.92968 1.23100 0.95884 0.89168 1.00565 1.66902 1.13618 1.17930 1.22185 1.17874 0.95632 0.86062 0.89177 1.91633 1.74279 1.48834 1.94321 1.21729 0.98712 0.92968 1.02149 1.20558 1.01572 0.95235 0.88172 1.98437 1.88199 1.67723 1.45513 1.21006 1.00051 0.90723 0.94221 1.21253 0.93033 1.00167 1.12307 0.91775 0.86674 0.83011 0.88092 0.88348 0.77641 0.79607 0.83841 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.67 21.61 0.30 -55.26 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 42.00 29.55 68.60 2.03 44.02 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.43 9.76 -22.78 -0.22 -13.65 16 10 C 0.12 5.91 6.65 22.58 0.15 6.06 16 11 C -0.21 -8.41 9.99 22.39 0.22 -8.18 16 12 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.18 -4.83 5.51 -19.83 -0.11 -4.94 16 14 C 0.11 1.91 4.87 71.24 0.35 2.26 16 15 O -0.30 -6.37 9.68 -93.31 -0.90 -7.27 16 16 C 0.09 1.55 6.70 22.59 0.15 1.70 16 17 C 0.07 1.11 10.22 84.75 0.87 1.97 16 18 N -0.49 -9.43 10.37 -196.63 -2.04 -11.47 16 19 C 0.27 4.80 8.40 84.72 0.71 5.51 16 20 F -0.11 -2.06 17.29 44.97 0.78 -1.29 16 21 C -0.13 -2.02 9.90 22.42 0.22 -1.80 16 22 C -0.02 -0.37 6.38 22.61 0.14 -0.22 16 23 Cl -0.03 -0.55 28.64 -2.72 -0.08 -0.63 16 24 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 25 C -0.25 -10.20 9.17 22.39 0.21 -10.00 16 26 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.10 1.20 7.62 -2.39 -0.02 1.18 16 30 H 0.10 1.21 7.62 -2.39 -0.02 1.19 16 31 H 0.21 1.91 6.31 -2.91 -0.02 1.90 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 Total: -1.00 -70.93 325.37 5.48 -65.45 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.17 Total: 13.44 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 4.45 Total: -33.35 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.74 Total: -66.72 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.13 Total: -20.92 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.78 Total: -1.29 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -70.93 5.48 -65.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340938034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.996 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds