Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46675 * 2 1 4 4 C 1.46509 * 119.99628 * 274.99589 * 3 2 1 5 5 C 1.50701 * 109.46975 * 274.99982 * 4 3 2 6 6 H 1.08007 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99967 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47369 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47093 * 120.00029 * 9 7 5 12 12 H 1.48499 * 109.47325 * 240.00453 * 9 7 5 13 13 S 1.65598 * 120.00630 * 94.99991 * 3 2 1 14 14 O 1.42105 * 106.39768 * 336.45935 * 13 3 2 15 15 O 1.42094 * 106.40567 * 203.53698 * 13 3 2 16 16 C 1.76197 * 107.21838 * 89.99181 * 13 3 2 17 17 C 1.38431 * 119.99705 * 90.00591 * 16 13 3 18 18 F 1.35104 * 120.00081 * 0.02562 * 17 16 13 19 19 C 1.38431 * 120.00295 * 179.97438 * 17 16 13 20 20 C 1.38435 * 119.99826 * 0.02562 * 19 17 16 21 21 F 1.35095 * 120.00078 * 179.70019 * 20 19 17 22 22 C 1.38431 * 119.99882 * 359.97130 * 20 19 17 23 23 C 1.38431 * 120.00291 * 0.02870 * 22 20 19 24 24 F 1.35099 * 120.00534 * 179.97438 * 23 22 20 25 25 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08989 * 109.47259 * 300.00581 * 1 2 3 27 27 H 1.09003 * 109.46872 * 60.00509 * 1 2 3 28 28 H 1.09001 * 109.47455 * 240.00087 * 2 1 3 29 29 H 1.09003 * 109.46872 * 119.99491 * 2 1 3 30 30 H 1.08990 * 109.47170 * 35.00187 * 4 3 2 31 31 H 1.08996 * 109.46758 * 155.00608 * 4 3 2 32 32 H 0.96996 * 119.99411 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.00742 * 179.97438 * 19 17 16 34 34 H 1.08001 * 120.00254 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3838 7 6 3.8526 2.3605 -3.0849 8 7 3.0276 3.1853 -3.6922 9 14 5.5090 1.9635 -3.8517 10 1 6.2450 1.0157 -2.9770 11 1 5.3014 1.3456 -5.1860 12 1 6.2972 3.2131 -4.0020 13 16 2.4121 2.1204 1.4286 14 8 1.6868 1.4417 2.4447 15 8 2.3056 3.5187 1.1996 16 6 4.1169 1.7943 1.7320 17 6 5.0833 2.6624 1.2539 18 9 4.7194 3.7600 0.5553 19 6 6.4227 2.4066 1.4927 20 6 6.7956 1.2822 2.2090 21 9 8.1030 1.0293 2.4369 22 6 5.8291 0.4141 2.6871 23 6 4.4898 0.6699 2.4484 24 9 3.5465 -0.1775 2.9145 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.3618 1.8096 -1.9454 31 1 2.0921 3.1802 -1.0757 32 1 3.2792 3.5872 -4.5384 33 1 7.1768 3.0836 1.1194 34 1 6.1200 -0.4633 3.2456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -173.206098 kcal Electronic energy + Delta-G solvation = -26774.019774 eV Core-core repulsion = 22385.218591 eV Total energy + Delta-G solvation = -4388.801183 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.41956 -49.31430 -48.96119 -38.58536 -36.75764 -36.13806 -35.36127 -32.76741 -30.94716 -30.72942 -30.00023 -26.69763 -23.73535 -23.41998 -23.15024 -21.77573 -19.01521 -18.59701 -18.05937 -17.35839 -17.07706 -16.39057 -16.29132 -16.14969 -15.96780 -15.56390 -15.47684 -15.23768 -14.85446 -14.60500 -14.44718 -13.91613 -13.45272 -13.26760 -12.94786 -12.51139 -12.24545 -12.13643 -12.05919 -11.87793 -11.74001 -11.57759 -11.41384 -11.11565 -10.99615 -10.83907 -10.55872 -10.44365 -10.10322 -9.85033 -9.43002 -9.04816 -8.54509 -8.16851 -6.16388 -4.23254 0.25326 0.70266 0.87359 2.79232 3.19554 3.28130 3.29305 3.31227 3.47164 3.97334 4.04987 4.13044 4.18579 4.31647 4.53077 5.04085 5.18305 5.19709 5.36554 5.38342 5.46829 5.52554 5.69351 5.75151 5.79437 6.05725 6.27763 6.43323 6.59892 6.65121 7.26298 7.34697 7.55319 7.79222 8.07747 8.80218 9.43248 10.91769 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.008252 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.521041 B = 3392.309716 C = 4952.895469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 N -0.973 5.973 4 C 0.242 3.758 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 S 2.687 3.313 14 O -0.959 6.959 15 O -0.939 6.939 16 C -0.768 4.768 17 C 0.282 3.718 18 F -0.079 7.079 19 C -0.230 4.230 20 C 0.208 3.792 21 F -0.118 7.118 22 C -0.233 4.233 23 C 0.254 3.746 24 F -0.099 7.099 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.163 0.837 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -5.569 10.635 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.813 5.813 4 C 0.120 3.880 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.207 1.207 13 S 2.771 3.229 14 O -0.949 6.949 15 O -0.929 6.929 16 C -0.851 4.851 17 C 0.261 3.739 18 F -0.056 7.056 19 C -0.251 4.251 20 C 0.188 3.812 21 F -0.096 7.096 22 C -0.253 4.253 23 C 0.233 3.767 24 F -0.077 7.077 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.180 0.820 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.740 -4.973 10.990 12.629 hybrid contribution 1.862 -0.553 -0.827 2.111 sum 5.602 -5.526 10.163 12.853 Atomic orbital electron populations 1.22193 0.96384 1.01639 1.02589 1.21117 0.94102 0.82353 1.02566 1.57477 1.76909 1.23486 1.23475 1.19337 0.97591 0.92539 0.78535 1.21513 1.02239 1.28186 1.06323 0.92296 1.24893 0.97061 0.94688 0.96797 1.69928 1.35798 1.29578 1.16974 0.86613 0.84125 0.78364 0.79431 1.19741 1.20738 1.20681 1.02415 0.72912 0.74230 0.73331 1.93569 1.68446 1.75761 1.57096 1.93606 1.85096 1.29055 1.85177 1.31459 1.30188 1.05686 1.17742 1.16240 0.90747 0.81740 0.85209 1.91804 1.91873 1.48233 1.73700 1.21155 0.96276 1.00988 1.06642 1.16944 0.77994 0.92778 0.93511 1.91574 1.32379 1.93626 1.92064 1.20992 0.90830 1.04136 1.09370 1.16206 0.85623 0.85218 0.89635 1.91686 1.62967 1.67879 1.85151 0.92098 0.92429 0.91908 0.89845 0.91543 0.93612 0.92625 0.92540 0.81981 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.12 2.12 6.06 -4.04 -0.02 2.09 16 3 N -0.97 -19.73 2.77 -115.66 -0.32 -20.05 16 4 C 0.24 5.81 5.44 -5.19 -0.03 5.78 16 5 C -0.54 -13.87 9.38 -34.44 -0.32 -14.19 16 6 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.88 -24.71 13.29 55.43 0.74 -23.98 16 9 Si 0.89 20.38 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 S 2.69 53.69 5.54 -107.50 -0.60 53.09 16 14 O -0.96 -19.01 15.17 -57.17 -0.87 -19.88 16 15 O -0.94 -21.27 14.75 -57.17 -0.84 -22.11 16 16 C -0.77 -13.65 5.99 -39.44 -0.24 -13.89 16 17 C 0.28 4.97 7.21 -39.44 -0.28 4.68 16 18 F -0.08 -1.60 15.34 2.25 0.03 -1.56 16 19 C -0.23 -3.28 10.00 -39.44 -0.39 -3.67 16 20 C 0.21 2.67 7.30 -39.44 -0.29 2.38 16 21 F -0.12 -1.39 17.27 2.25 0.04 -1.35 16 22 C -0.23 -2.92 10.00 -39.44 -0.39 -3.31 16 23 C 0.25 3.88 7.21 -39.44 -0.28 3.60 16 24 F -0.10 -1.52 15.20 2.25 0.03 -1.48 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.90 8.14 -51.94 -0.42 0.47 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.07 1.02 7.47 -51.93 -0.39 0.63 16 30 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 31 H 0.06 1.47 6.91 -51.93 -0.36 1.11 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -29.65 321.70 -7.18 -36.82 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.25 Total: -2.72 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.97 Total: -16.98 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.42 Total: -44.03 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.71 Total: -41.99 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.11 Total: -4.40 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 53.69 SS G_CDS: -0.60 Total: 53.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.65 -7.18 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.385 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds