Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46675 * 2 1 4 4 C 1.46509 * 119.99628 * 274.99589 * 3 2 1 5 5 C 1.50701 * 109.46975 * 274.99982 * 4 3 2 6 6 H 1.08007 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99967 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47369 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47093 * 120.00029 * 9 7 5 12 12 H 1.48499 * 109.47325 * 240.00453 * 9 7 5 13 13 S 1.65598 * 120.00630 * 94.99991 * 3 2 1 14 14 O 1.42105 * 106.39768 * 336.45935 * 13 3 2 15 15 O 1.42094 * 106.40567 * 203.53698 * 13 3 2 16 16 C 1.76197 * 107.21838 * 89.99181 * 13 3 2 17 17 C 1.38431 * 119.99705 * 90.00591 * 16 13 3 18 18 F 1.35104 * 120.00081 * 0.02562 * 17 16 13 19 19 C 1.38431 * 120.00295 * 179.97438 * 17 16 13 20 20 C 1.38435 * 119.99826 * 0.02562 * 19 17 16 21 21 F 1.35095 * 120.00078 * 179.70019 * 20 19 17 22 22 C 1.38431 * 119.99882 * 359.97130 * 20 19 17 23 23 C 1.38431 * 120.00291 * 0.02870 * 22 20 19 24 24 F 1.35099 * 120.00534 * 179.97438 * 23 22 20 25 25 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08989 * 109.47259 * 300.00581 * 1 2 3 27 27 H 1.09003 * 109.46872 * 60.00509 * 1 2 3 28 28 H 1.09001 * 109.47455 * 240.00087 * 2 1 3 29 29 H 1.09003 * 109.46872 * 119.99491 * 2 1 3 30 30 H 1.08990 * 109.47170 * 35.00187 * 4 3 2 31 31 H 1.08996 * 109.46758 * 155.00608 * 4 3 2 32 32 H 0.96996 * 119.99411 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.00742 * 179.97438 * 19 17 16 34 34 H 1.08001 * 120.00254 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3838 7 6 3.8526 2.3605 -3.0849 8 7 3.0276 3.1853 -3.6922 9 14 5.5090 1.9635 -3.8517 10 1 6.2450 1.0157 -2.9770 11 1 5.3014 1.3456 -5.1860 12 1 6.2972 3.2131 -4.0020 13 16 2.4121 2.1204 1.4286 14 8 1.6868 1.4417 2.4447 15 8 2.3056 3.5187 1.1996 16 6 4.1169 1.7943 1.7320 17 6 5.0833 2.6624 1.2539 18 9 4.7194 3.7600 0.5553 19 6 6.4227 2.4066 1.4927 20 6 6.7956 1.2822 2.2090 21 9 8.1030 1.0293 2.4369 22 6 5.8291 0.4141 2.6871 23 6 4.4898 0.6699 2.4484 24 9 3.5465 -0.1775 2.9145 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.3618 1.8096 -1.9454 31 1 2.0921 3.1802 -1.0757 32 1 3.2792 3.5872 -4.5384 33 1 7.1768 3.0836 1.1194 34 1 6.1200 -0.4633 3.2456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -191.493691 kcal Electronic energy + Delta-G solvation = -26774.812784 eV Core-core repulsion = 22385.218591 eV Total energy + Delta-G solvation = -4389.594193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.49959 -50.41715 -50.35635 -39.75658 -38.38173 -37.75719 -37.00348 -34.70543 -32.15785 -31.87322 -31.54602 -28.53596 -25.07593 -24.80508 -24.56772 -23.32452 -20.41281 -19.86220 -19.26802 -18.84399 -18.73856 -18.21286 -17.51444 -17.32421 -17.21286 -17.04661 -16.66326 -16.58127 -16.33146 -16.10008 -15.63251 -15.46708 -14.87480 -14.70544 -14.57286 -13.85886 -13.72316 -13.65388 -13.37480 -13.31892 -13.20589 -13.11057 -13.06881 -12.78210 -12.68570 -12.33068 -12.22663 -12.15175 -11.73658 -11.61624 -10.65033 -10.56292 -10.20654 -9.85361 -8.17653 -6.30891 -0.98542 -0.64768 -0.44925 1.39552 1.41321 1.51264 1.60172 1.96133 2.15733 2.40983 2.57187 2.78635 2.90416 2.93014 3.15125 3.49387 3.63565 3.93329 4.13532 4.18871 4.32005 4.36094 4.42280 4.47041 4.64579 4.70462 4.99233 5.14389 5.26256 5.30978 5.41658 5.48594 5.73250 5.88414 6.08033 6.79373 7.39028 8.90988 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.008252 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.521041 B = 3392.309716 C = 4952.895469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.979 5.979 4 C 0.258 3.742 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.924 5.924 9 Si 0.948 3.052 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.281 1.281 13 S 2.693 3.307 14 O -0.962 6.962 15 O -0.977 6.977 16 C -0.783 4.783 17 C 0.250 3.750 18 F -0.106 7.106 19 C -0.221 4.221 20 C 0.223 3.777 21 F -0.104 7.104 22 C -0.207 4.207 23 C 0.247 3.753 24 F -0.100 7.100 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.185 0.815 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -7.892 11.695 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.819 5.819 4 C 0.134 3.866 5 C -0.581 4.581 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.207 1.207 13 S 2.781 3.219 14 O -0.952 6.952 15 O -0.968 6.968 16 C -0.870 4.870 17 C 0.229 3.771 18 F -0.084 7.084 19 C -0.241 4.241 20 C 0.203 3.797 21 F -0.081 7.081 22 C -0.227 4.227 23 C 0.226 3.774 24 F -0.078 7.078 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.082 -7.317 12.063 15.364 hybrid contribution 1.187 0.107 -1.033 1.578 sum 7.269 -7.210 11.030 15.049 Atomic orbital electron populations 1.22192 0.95161 1.03574 1.01682 1.21405 0.95268 0.80703 1.03583 1.57373 1.77871 1.24598 1.22074 1.18859 0.96858 0.91102 0.79741 1.21756 1.02581 1.27601 1.06121 0.91642 1.25710 1.00462 0.94629 0.97494 1.70052 1.37793 1.30946 1.17517 0.85651 0.80043 0.78281 0.78724 1.18279 1.20351 1.20673 1.01833 0.73710 0.73323 0.73026 1.93552 1.69415 1.75494 1.56764 1.93557 1.86217 1.31411 1.85581 1.31037 1.28406 1.07594 1.19967 1.16546 0.92186 0.81698 0.86703 1.91736 1.92274 1.49635 1.74728 1.21379 0.95161 1.01710 1.05886 1.16861 0.78566 0.91942 0.92328 1.91626 1.31431 1.93377 1.91716 1.21345 0.89115 1.04644 1.07550 1.16293 0.86752 0.84592 0.89779 1.91684 1.63296 1.67668 1.85118 0.88729 0.93130 0.93019 0.89587 0.89626 0.95034 0.95937 0.92515 0.79717 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 10.24 71.98 0.74 -4.24 16 2 C 0.12 3.85 6.06 86.38 0.52 4.37 16 3 N -0.98 -40.49 2.77 -519.82 -1.44 -41.93 16 4 C 0.26 12.88 5.44 85.63 0.47 13.34 16 5 C -0.54 -27.95 9.38 25.60 0.24 -27.71 16 6 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.02 0.91 5.46 84.65 0.46 1.37 16 8 N -0.92 -52.90 13.29 21.45 0.28 -52.61 16 9 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 S 2.69 109.88 5.54 -56.49 -0.31 109.57 16 14 O -0.96 -38.18 15.17 -128.00 -1.94 -40.12 16 15 O -0.98 -46.65 14.75 -128.00 -1.89 -48.54 16 16 C -0.78 -27.34 5.99 22.36 0.13 -27.20 16 17 C 0.25 8.68 7.21 22.36 0.16 8.84 16 18 F -0.11 -4.44 15.34 44.97 0.69 -3.75 16 19 C -0.22 -5.74 10.00 22.36 0.22 -5.52 16 20 C 0.22 4.80 7.30 22.36 0.16 4.96 16 21 F -0.10 -1.93 17.27 44.97 0.78 -1.15 16 22 C -0.21 -4.27 10.00 22.36 0.22 -4.05 16 23 C 0.25 6.93 7.21 22.36 0.16 7.09 16 24 F -0.10 -2.81 15.20 44.97 0.68 -2.13 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 29 H 0.09 2.51 7.47 -2.39 -0.02 2.49 16 30 H 0.03 1.64 8.11 -2.39 -0.02 1.62 16 31 H 0.02 1.27 6.91 -2.39 -0.02 1.26 16 32 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -65.55 321.70 3.52 -62.03 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.15 Total: 3.92 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.50 Total: -28.74 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -1.15 Total: -94.54 kcal Atomic # 8 Polarization: -84.83 SS G_CDS: -3.83 Total: -88.66 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 2.15 Total: -7.03 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 109.88 SS G_CDS: -0.31 Total: 109.57 kcal Total: -65.55 3.52 -62.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.464 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds