Wall clock time and date at job start Tue Mar 31 2020 14:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34972 * 120.00326 * 2 1 4 4 C 1.46232 * 120.00227 * 179.97438 * 3 2 1 5 5 O 1.21752 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99960 * 180.02562 * 4 3 2 7 7 C 1.36714 * 120.00241 * 359.97438 * 6 4 3 8 8 H 1.08003 * 119.99856 * 18.33968 * 7 6 4 9 9 C 1.39119 * 120.00360 * 198.34229 * 7 6 4 10 10 N 1.31330 * 120.00207 * 19.19523 * 9 7 6 11 11 Si 1.86802 * 120.00378 * 199.19683 * 9 7 6 12 12 H 1.48502 * 109.47132 * 59.99712 * 11 9 7 13 13 H 1.48499 * 109.47486 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46813 * 300.00072 * 11 9 7 15 15 C 1.46504 * 120.00115 * 180.02562 * 6 4 3 16 16 C 1.50692 * 109.47408 * 84.02469 * 15 6 4 17 17 O 1.20829 * 120.00217 * 0.02562 * 16 15 6 18 18 O 1.34227 * 120.00015 * 180.02562 * 16 15 6 19 19 C 1.47152 * 119.99929 * 180.27625 * 2 1 3 20 20 C 1.39895 * 120.16732 * 114.72629 * 19 2 1 21 21 C 1.37868 * 119.84824 * 179.75057 * 20 19 2 22 22 C 1.38415 * 120.18559 * 0.54346 * 21 20 19 23 23 C 1.38505 * 120.34043 * 359.70734 * 22 21 20 24 24 Cl 1.73594 * 119.92505 * 180.02562 * 23 22 21 25 25 C 1.38020 * 120.14633 * 0.02562 * 23 22 21 26 26 H 1.08992 * 109.47278 * 269.72506 * 1 2 3 27 27 H 1.09011 * 109.46923 * 29.72729 * 1 2 3 28 28 H 1.09001 * 109.47237 * 149.72314 * 1 2 3 29 29 H 1.08008 * 119.99892 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00160 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.46971 * 204.02968 * 15 6 4 32 32 H 1.08999 * 109.46408 * 324.02342 * 15 6 4 33 33 H 0.96698 * 117.00171 * 180.02562 * 18 16 15 34 34 H 1.08001 * 120.07550 * 359.97438 * 20 19 2 35 35 H 1.08003 * 119.90649 * 180.27219 * 21 20 19 36 36 H 1.08005 * 119.82771 * 179.72217 * 22 21 20 37 37 H 1.08003 * 120.09450 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1689 0.0000 4 6 3.6442 1.1688 0.0006 5 8 4.2529 0.1144 0.0015 6 7 4.3181 2.3360 0.0011 7 6 3.6346 3.5200 0.0006 8 1 2.5955 3.5438 0.2941 9 6 4.2775 4.6942 -0.3781 10 7 5.3860 4.6390 -1.0801 11 14 3.5640 6.3496 0.1121 12 1 3.4948 6.4399 1.5928 13 1 4.4311 7.4364 -0.4096 14 1 2.1993 6.4883 -0.4566 15 6 5.7831 2.3360 0.0011 16 6 6.2855 2.1888 -1.4120 17 8 5.5004 2.0940 -2.3255 18 8 7.6052 2.1628 -1.6558 19 6 2.2427 -1.2744 -0.0061 20 6 3.0323 -1.6249 -1.1064 21 6 3.7230 -2.8182 -1.1030 22 6 3.6280 -3.6742 -0.0195 23 6 2.8443 -3.3373 1.0717 24 17 2.7335 -4.4186 2.4252 25 6 2.1514 -2.1437 1.0854 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 0.8925 -0.5096 28 1 -0.3634 -0.8875 -0.5181 29 1 1.6419 2.1042 0.0004 30 1 5.8344 5.4577 -1.3438 31 1 6.1464 3.2744 0.4200 32 1 6.1463 1.5041 0.6044 33 1 7.8794 2.0671 -2.5781 34 1 3.1036 -0.9607 -1.9550 35 1 4.3363 -3.0877 -1.9501 36 1 4.1680 -4.6096 -0.0249 37 1 1.5409 -1.8816 1.9369 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825716491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:15 Heat of formation + Delta-G solvation = -74.463996 kcal Electronic energy + Delta-G solvation = -25215.721720 eV Core-core repulsion = 21371.015349 eV Total energy + Delta-G solvation = -3844.706370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.58621 -38.94176 -37.92855 -36.26716 -35.30728 -34.61438 -34.17700 -31.69805 -30.36763 -29.63019 -28.67213 -26.78376 -24.83372 -22.95116 -22.11269 -21.24326 -19.66802 -18.76853 -17.35782 -16.98953 -16.38344 -15.98396 -15.57008 -14.99762 -14.90224 -14.52389 -14.41034 -14.26272 -13.54669 -13.41374 -13.23046 -13.16622 -12.81821 -12.66588 -12.14357 -11.96240 -11.81221 -11.60903 -11.52376 -11.22542 -11.11259 -11.01342 -10.98607 -10.60370 -10.58550 -10.37107 -10.25988 -9.66771 -9.13855 -9.01260 -8.58601 -8.41100 -8.01152 -7.64827 -6.62423 -4.07217 1.43867 1.72728 2.09322 2.43719 3.05136 3.11771 3.13227 3.64615 3.83625 4.06403 4.10954 4.37056 4.64732 4.99053 5.03467 5.21221 5.36941 5.53942 5.67193 5.73747 5.80071 5.84999 6.03130 6.14880 6.17214 6.21990 6.34171 6.52103 6.53582 6.59025 6.73640 6.86605 6.94674 7.08734 7.23989 7.27978 7.47024 7.60044 8.13202 8.87194 9.15606 9.29069 9.71638 10.44269 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.004150 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.535722 B = 6745.043627 C = 7699.338087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.139 4.139 4 C 0.483 3.517 5 O -0.589 6.589 6 N -0.414 5.414 7 C -0.334 4.334 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.866 5.866 11 Si 0.928 3.072 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.157 3.843 16 C 0.501 3.499 17 O -0.509 6.509 18 O -0.536 6.536 19 C 0.000 4.000 20 C -0.036 4.036 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.041 4.041 24 Cl -0.093 7.093 25 C -0.106 4.106 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.275 0.725 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.390 0.610 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -7.943 2.183 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.076 4.076 3 C -0.160 4.160 4 C 0.275 3.725 5 O -0.476 6.476 6 N -0.131 5.131 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.169 4.169 10 N -0.503 5.503 11 Si 0.754 3.246 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.031 3.969 16 C 0.342 3.658 17 O -0.394 6.394 18 O -0.347 6.347 19 C -0.001 4.001 20 C -0.055 4.055 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.067 4.067 24 Cl -0.064 7.064 25 C -0.125 4.125 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.071 -8.336 2.377 9.576 hybrid contribution 0.096 1.176 -0.471 1.271 sum -3.975 -7.159 1.906 8.408 Atomic orbital electron populations 1.20756 0.90887 1.02643 1.02127 1.20787 0.94802 0.91644 1.00386 1.23091 0.94706 0.97430 1.00730 1.18098 0.88010 0.83598 0.82803 1.90738 1.69910 1.30280 1.56715 1.43316 1.03273 1.05643 1.60851 1.19654 0.97721 0.83466 1.45284 0.87644 1.25310 0.96594 1.00337 0.94643 1.69751 1.18969 1.29789 1.31811 0.85963 0.78964 0.80490 0.79146 1.19610 1.20800 1.19659 1.20403 0.82645 1.03823 0.90047 1.23602 0.78702 0.70128 0.93411 1.90556 1.56600 1.45715 1.46572 1.84521 1.28370 1.86722 1.35053 1.18537 0.95823 0.92336 0.93381 1.21132 0.92576 0.94305 0.97437 1.20821 0.99965 0.94532 0.98076 1.20879 0.99392 1.00390 0.92941 1.20561 1.03020 0.93108 0.90019 1.98322 1.97593 1.64676 1.45821 1.20895 1.00548 0.92460 0.98557 0.91213 0.91210 0.91750 0.85085 0.91422 0.86103 0.89910 0.75374 0.86273 0.85980 0.86043 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.02 36.00 0.36 -1.00 16 2 C -0.07 -1.24 5.49 -102.17 -0.56 -1.80 16 3 C -0.14 -2.74 8.96 -37.53 -0.34 -3.08 16 4 C 0.48 11.27 7.23 -13.05 -0.09 11.18 16 5 O -0.59 -14.35 11.90 5.14 0.06 -14.29 16 6 N -0.41 -10.03 2.17 -117.75 -0.26 -10.29 16 7 C -0.33 -8.02 9.11 -15.05 -0.14 -8.16 16 8 H 0.11 2.35 5.95 -52.48 -0.31 2.04 16 9 C 0.04 0.88 4.92 -17.44 -0.09 0.79 16 10 N -0.87 -21.67 9.13 55.50 0.51 -21.16 16 11 Si 0.93 18.48 29.60 -169.99 -5.03 13.45 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 15 C 0.16 3.65 5.14 -5.20 -0.03 3.62 16 16 C 0.50 11.91 6.46 36.00 0.23 12.14 16 17 O -0.51 -13.71 16.72 -18.75 -0.31 -14.03 16 18 O -0.54 -10.58 13.42 -39.25 -0.53 -11.10 16 19 C 0.00 -0.01 3.82 -105.06 -0.40 -0.41 16 20 C -0.04 -0.66 6.98 -39.10 -0.27 -0.93 16 21 C -0.12 -1.87 10.03 -39.65 -0.40 -2.27 16 22 C -0.12 -1.80 9.82 -39.42 -0.39 -2.18 16 23 C -0.04 -0.64 6.31 -39.56 -0.25 -0.89 16 24 Cl -0.09 -1.28 28.95 -51.86 -1.50 -2.78 16 25 C -0.11 -1.74 9.56 -39.06 -0.37 -2.11 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.82 8.07 -51.92 -0.42 0.40 16 28 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.13 2.42 6.15 -52.48 -0.32 2.10 16 30 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.12 2.81 6.42 -51.93 -0.33 2.48 16 32 H 0.08 1.83 7.61 -51.93 -0.39 1.43 16 33 H 0.39 5.98 9.10 45.56 0.41 6.39 16 34 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 35 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -30.09 337.13 -7.75 -37.84 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -3.04 Total: 12.40 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.73 Total: 4.89 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.25 Total: -31.45 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.78 Total: -39.42 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.50 Total: -2.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.09 -7.75 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825716491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.628 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds