Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35017 * 120.00326 * 2 1 4 4 C 1.47094 * 120.00501 * 186.90393 * 3 2 1 5 5 C 1.39901 * 120.16008 * 213.24028 * 4 3 2 6 6 C 1.37828 * 119.83824 * 179.97438 * 5 4 3 7 7 C 1.38562 * 120.15841 * 0.02562 * 6 5 4 8 8 Cl 1.73595 * 119.83589 * 179.97438 * 7 6 5 9 9 C 1.38560 * 120.32519 * 0.25969 * 7 6 5 10 10 C 1.37826 * 120.15516 * 359.48037 * 9 7 6 11 11 C 1.46190 * 120.00055 * 180.02562 * 2 1 3 12 12 O 1.21760 * 120.00485 * 74.06656 * 11 2 1 13 13 N 1.34782 * 119.99738 * 254.06583 * 11 2 1 14 14 C 1.36724 * 120.00130 * 185.12776 * 13 11 2 15 15 H 1.07997 * 119.99605 * 326.45419 * 14 13 11 16 16 C 1.39111 * 119.99740 * 146.45008 * 14 13 11 17 17 N 1.31332 * 120.00037 * 159.83583 * 16 14 13 18 18 Si 1.86803 * 120.00371 * 339.83769 * 16 14 13 19 19 H 1.48500 * 109.47076 * 90.79313 * 18 16 14 20 20 H 1.48498 * 109.47024 * 210.79036 * 18 16 14 21 21 H 1.48503 * 109.46962 * 330.78945 * 18 16 14 22 22 C 1.46505 * 119.99688 * 5.13077 * 13 11 2 23 23 C 1.50700 * 109.47089 * 83.93181 * 22 13 11 24 24 O 1.20819 * 119.99993 * 359.97438 * 23 22 13 25 25 O 1.34231 * 119.99783 * 179.97438 * 23 22 13 26 26 H 1.09006 * 109.47177 * 84.90311 * 1 2 3 27 27 H 1.08998 * 109.47097 * 204.90096 * 1 2 3 28 28 H 1.08996 * 109.47103 * 324.90501 * 1 2 3 29 29 H 1.08003 * 119.99532 * 6.90460 * 3 2 1 30 30 H 1.08000 * 120.08178 * 359.96395 * 5 4 3 31 31 H 1.08000 * 119.92481 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.91921 * 179.72282 * 9 7 6 33 33 H 1.08008 * 120.07915 * 180.25509 * 10 9 7 34 34 H 0.96996 * 120.00402 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.46544 * 203.92746 * 22 13 11 36 36 H 1.08996 * 109.47089 * 323.92700 * 22 13 11 37 37 H 0.96694 * 116.99736 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1692 0.0000 4 6 3.6451 1.1739 -0.1531 5 6 4.4163 2.1461 0.4928 6 6 5.7866 2.1440 0.3451 7 6 6.4006 1.1823 -0.4411 8 17 8.1271 1.1878 -0.6218 9 6 5.6427 0.2199 -1.0886 10 6 4.2719 0.2065 -0.9458 11 6 2.2379 -1.2660 -0.0006 12 8 2.2917 -1.9376 -1.0148 13 7 2.8524 -1.6899 1.1217 14 6 3.6227 -2.8192 1.0945 15 1 3.3559 -3.6392 0.4443 16 6 4.7500 -2.9117 1.9042 17 7 5.2590 -4.0884 2.1892 18 14 5.5400 -1.3625 2.5864 19 1 4.9430 -1.0432 3.9081 20 1 7.0007 -1.5792 2.7424 21 1 5.3042 -0.2335 1.6508 22 6 2.6948 -0.9405 2.3707 23 6 1.4202 -1.3648 3.0537 24 8 0.7156 -2.2064 2.5487 25 8 1.0679 -0.8078 4.2230 26 1 -0.3634 0.0913 -1.0237 27 1 -0.3633 -0.9321 0.4327 28 1 -0.3633 0.8408 0.5908 29 1 1.6480 2.1012 0.1124 30 1 3.9391 2.8967 1.1055 31 1 6.3834 2.8936 0.8434 32 1 6.1276 -0.5239 -1.7034 33 1 3.6827 -0.5468 -1.4478 34 1 6.0452 -4.1530 2.7535 35 1 3.5426 -1.1430 3.0252 36 1 2.6518 0.1263 2.1513 37 1 0.2416 -1.1119 4.6227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833383747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -63.729498 kcal Electronic energy + Delta-G solvation = -26244.629518 eV Core-core repulsion = 22400.388630 eV Total energy + Delta-G solvation = -3844.240888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31715 -39.37423 -38.31161 -36.32285 -35.79362 -34.94302 -34.40010 -32.10962 -30.85951 -30.66956 -28.15209 -26.51146 -25.53804 -22.91477 -22.12724 -21.79906 -20.99116 -18.08384 -17.78163 -17.37176 -17.07798 -16.38531 -15.98384 -15.72923 -15.37688 -14.95666 -14.72507 -14.35193 -13.79945 -13.43704 -13.25386 -13.13424 -12.97594 -12.83957 -12.75506 -12.46124 -12.28870 -12.12709 -11.77996 -11.46100 -11.27041 -11.17649 -11.06985 -10.79241 -10.59913 -10.45119 -10.16939 -9.89044 -9.42335 -9.22856 -8.79283 -8.74508 -8.06869 -7.81080 -6.49712 -4.07060 0.92959 1.58383 2.24188 2.31569 2.62986 2.89329 3.04499 3.19642 3.22405 3.71472 3.96387 4.01981 4.24855 4.79914 4.89587 5.01614 5.09092 5.16806 5.37294 5.42447 5.50111 5.61253 5.64447 5.70166 5.78361 5.80812 5.93453 6.04637 6.22289 6.28266 6.47811 6.57170 6.62858 6.81991 6.88134 7.07010 7.35145 8.09560 8.26541 8.34888 8.78617 9.15451 9.52102 10.61219 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.006712 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.000114 B = 4170.506650 C = 5031.770627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.060 4.060 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.031 4.031 8 Cl -0.083 7.083 9 C -0.100 4.100 10 C -0.083 4.083 11 C 0.515 3.485 12 O -0.552 6.552 13 N -0.430 5.430 14 C -0.316 4.316 15 H 0.113 0.887 16 C 0.063 3.937 17 N -0.853 5.853 18 Si 0.847 3.153 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.234 1.234 22 C 0.090 3.910 23 C 0.458 3.542 24 O -0.492 6.492 25 O -0.525 6.525 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.276 0.724 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 15.049 0.934 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.127 4.127 3 C -0.131 4.131 4 C -0.061 4.061 5 C -0.117 4.117 6 C -0.137 4.137 7 C -0.058 4.058 8 Cl -0.055 7.055 9 C -0.119 4.119 10 C -0.100 4.100 11 C 0.305 3.695 12 O -0.435 6.435 13 N -0.150 5.150 14 C -0.443 4.443 15 H 0.131 0.869 16 C -0.144 4.144 17 N -0.488 5.488 18 Si 0.673 3.327 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.157 1.157 22 C -0.035 4.035 23 C 0.297 3.703 24 O -0.377 6.377 25 O -0.337 6.337 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.177 14.437 0.156 14.601 hybrid contribution 0.217 0.377 1.064 1.150 sum -1.960 14.814 1.220 14.993 Atomic orbital electron populations 1.20741 0.90172 1.03032 1.02639 1.22338 0.97031 0.94127 0.99235 1.21917 0.91825 0.97030 1.02367 1.19094 0.93085 0.95811 0.98068 1.21141 0.92781 0.98511 0.99299 1.20808 0.94855 0.98648 0.99429 1.21060 0.83928 0.99066 1.01723 1.98344 1.12074 1.98275 1.96758 1.20995 0.93870 0.97359 0.99648 1.22117 0.94380 0.96842 0.96700 1.17821 0.82256 0.85658 0.83749 1.90719 1.63324 1.57179 1.32289 1.43168 1.43655 1.24944 1.03255 1.19057 1.04725 0.93436 1.27119 0.86922 1.25323 0.96207 0.96569 0.96342 1.69685 1.22398 1.23012 1.33741 0.87499 0.79797 0.85873 0.79501 1.20289 1.20850 1.15700 1.21706 0.93631 0.98540 0.89660 1.24528 0.88125 0.79104 0.78518 1.90704 1.52522 1.29924 1.64548 1.84574 1.45765 1.65821 1.37510 0.90386 0.91014 0.91454 0.85027 0.85198 0.85353 0.84936 0.82538 0.91330 0.86810 0.87495 0.74093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.03 36.00 0.36 -1.19 16 2 C -0.12 -2.13 4.44 -102.58 -0.46 -2.59 16 3 C -0.11 -1.63 8.31 -37.14 -0.31 -1.94 16 4 C -0.06 -0.97 4.84 -105.06 -0.51 -1.47 16 5 C -0.10 -1.36 9.40 -39.11 -0.37 -1.73 16 6 C -0.12 -1.69 9.31 -39.61 -0.37 -2.06 16 7 C -0.03 -0.50 5.82 -39.34 -0.23 -0.73 16 8 Cl -0.08 -1.23 28.95 -51.86 -1.50 -2.74 16 9 C -0.10 -1.76 9.43 -39.61 -0.37 -2.13 16 10 C -0.08 -1.53 8.02 -39.11 -0.31 -1.84 16 11 C 0.52 11.54 3.81 -13.07 -0.05 11.49 16 12 O -0.55 -14.32 15.24 5.14 0.08 -14.25 16 13 N -0.43 -10.06 1.80 -117.76 -0.21 -10.27 16 14 C -0.32 -8.69 9.50 -15.05 -0.14 -8.83 16 15 H 0.11 3.55 7.78 -52.49 -0.41 3.14 16 16 C 0.06 1.68 5.34 -17.44 -0.09 1.58 16 17 N -0.85 -24.25 13.95 55.50 0.77 -23.47 16 18 Si 0.85 19.08 24.88 -169.99 -4.23 14.85 16 19 H -0.27 -5.86 6.49 56.52 0.37 -5.49 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.23 -4.90 4.63 56.52 0.26 -4.64 16 22 C 0.09 1.82 4.36 -5.19 -0.02 1.79 16 23 C 0.46 8.69 8.32 36.01 0.30 8.99 16 24 O -0.49 -10.84 16.94 -18.74 -0.32 -11.16 16 25 O -0.52 -7.57 13.42 -39.26 -0.53 -8.09 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.18 7.97 -51.93 -0.41 0.76 16 28 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.16 3.29 4.85 -52.48 -0.25 3.04 16 34 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.11 2.42 2.74 -51.93 -0.14 2.28 16 36 H 0.11 1.83 5.71 -51.93 -0.30 1.53 16 37 H 0.40 3.83 9.10 45.56 0.41 4.24 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -32.97 329.27 -6.49 -39.46 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -2.95 Total: 11.36 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.57 Total: -0.67 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.56 Total: -33.74 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.77 Total: -33.49 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.23 Total: 14.85 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.97 -6.49 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833383747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.268 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds