Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35017 * 120.00326 * 2 1 4 4 C 1.47094 * 120.00501 * 186.90393 * 3 2 1 5 5 C 1.39901 * 120.16008 * 213.24028 * 4 3 2 6 6 C 1.37828 * 119.83824 * 179.97438 * 5 4 3 7 7 C 1.38562 * 120.15841 * 0.02562 * 6 5 4 8 8 Cl 1.73595 * 119.83589 * 179.97438 * 7 6 5 9 9 C 1.38560 * 120.32519 * 0.25969 * 7 6 5 10 10 C 1.37826 * 120.15516 * 359.48037 * 9 7 6 11 11 C 1.46190 * 120.00055 * 180.02562 * 2 1 3 12 12 O 1.21760 * 120.00485 * 74.06656 * 11 2 1 13 13 N 1.34782 * 119.99738 * 254.06583 * 11 2 1 14 14 C 1.36724 * 120.00130 * 185.12776 * 13 11 2 15 15 H 1.07997 * 119.99605 * 326.45419 * 14 13 11 16 16 C 1.39111 * 119.99740 * 146.45008 * 14 13 11 17 17 N 1.31332 * 120.00037 * 159.83583 * 16 14 13 18 18 Si 1.86803 * 120.00371 * 339.83769 * 16 14 13 19 19 H 1.48500 * 109.47076 * 90.79313 * 18 16 14 20 20 H 1.48498 * 109.47024 * 210.79036 * 18 16 14 21 21 H 1.48503 * 109.46962 * 330.78945 * 18 16 14 22 22 C 1.46505 * 119.99688 * 5.13077 * 13 11 2 23 23 C 1.50700 * 109.47089 * 83.93181 * 22 13 11 24 24 O 1.20819 * 119.99993 * 359.97438 * 23 22 13 25 25 O 1.34231 * 119.99783 * 179.97438 * 23 22 13 26 26 H 1.09006 * 109.47177 * 84.90311 * 1 2 3 27 27 H 1.08998 * 109.47097 * 204.90096 * 1 2 3 28 28 H 1.08996 * 109.47103 * 324.90501 * 1 2 3 29 29 H 1.08003 * 119.99532 * 6.90460 * 3 2 1 30 30 H 1.08000 * 120.08178 * 359.96395 * 5 4 3 31 31 H 1.08000 * 119.92481 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.91921 * 179.72282 * 9 7 6 33 33 H 1.08008 * 120.07915 * 180.25509 * 10 9 7 34 34 H 0.96996 * 120.00402 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.46544 * 203.92746 * 22 13 11 36 36 H 1.08996 * 109.47089 * 323.92700 * 22 13 11 37 37 H 0.96694 * 116.99736 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1692 0.0000 4 6 3.6451 1.1739 -0.1531 5 6 4.4163 2.1461 0.4928 6 6 5.7866 2.1440 0.3451 7 6 6.4006 1.1823 -0.4411 8 17 8.1271 1.1878 -0.6218 9 6 5.6427 0.2199 -1.0886 10 6 4.2719 0.2065 -0.9458 11 6 2.2379 -1.2660 -0.0006 12 8 2.2917 -1.9376 -1.0148 13 7 2.8524 -1.6899 1.1217 14 6 3.6227 -2.8192 1.0945 15 1 3.3559 -3.6392 0.4443 16 6 4.7500 -2.9117 1.9042 17 7 5.2590 -4.0884 2.1892 18 14 5.5400 -1.3625 2.5864 19 1 4.9430 -1.0432 3.9081 20 1 7.0007 -1.5792 2.7424 21 1 5.3042 -0.2335 1.6508 22 6 2.6948 -0.9405 2.3707 23 6 1.4202 -1.3648 3.0537 24 8 0.7156 -2.2064 2.5487 25 8 1.0679 -0.8078 4.2230 26 1 -0.3634 0.0913 -1.0237 27 1 -0.3633 -0.9321 0.4327 28 1 -0.3633 0.8408 0.5908 29 1 1.6480 2.1012 0.1124 30 1 3.9391 2.8967 1.1055 31 1 6.3834 2.8936 0.8434 32 1 6.1276 -0.5239 -1.7034 33 1 3.6827 -0.5468 -1.4478 34 1 6.0452 -4.1530 2.7535 35 1 3.5426 -1.1430 3.0252 36 1 2.6518 0.1263 2.1513 37 1 0.2416 -1.1119 4.6227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833383747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -86.745700 kcal Electronic energy + Delta-G solvation = -26245.627575 eV Core-core repulsion = 22400.388630 eV Total energy + Delta-G solvation = -3845.238945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.85020 -40.75748 -39.72739 -37.52747 -37.24939 -36.67209 -35.76178 -34.10202 -32.05962 -31.84641 -29.81279 -27.84407 -27.21472 -24.31604 -23.43706 -23.21291 -22.40377 -19.62580 -19.26182 -19.16654 -18.46680 -17.95098 -17.48510 -17.14577 -16.59345 -16.57780 -16.24425 -15.79949 -15.21717 -14.80860 -14.79380 -14.52568 -14.35558 -14.20150 -14.04032 -13.89420 -13.74041 -13.64521 -13.16264 -12.82777 -12.62924 -12.58111 -12.39295 -12.32949 -12.18195 -11.90465 -11.73155 -11.60112 -11.13781 -10.68521 -10.43056 -10.02319 -9.94288 -9.05916 -8.55945 -6.19221 -0.29912 0.38430 1.00776 1.10079 1.12244 1.15346 1.31803 1.43762 1.59898 2.08387 2.16418 2.62437 2.74500 2.98437 3.62529 3.73570 3.85373 3.88021 3.95217 4.03300 4.30366 4.36210 4.41354 4.51332 4.62362 4.75163 4.78115 4.97507 5.05446 5.11300 5.26841 5.33836 5.37438 5.47036 5.59539 5.70594 5.88002 5.98459 6.38561 6.81890 6.98931 7.16655 7.69162 8.60573 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.006712 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.000114 B = 4170.506650 C = 5031.770627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.159 4.159 3 C -0.072 4.072 4 C -0.078 4.078 5 C -0.078 4.078 6 C -0.115 4.115 7 C -0.039 4.039 8 Cl -0.077 7.077 9 C -0.125 4.125 10 C -0.107 4.107 11 C 0.518 3.482 12 O -0.609 6.609 13 N -0.442 5.442 14 C -0.328 4.328 15 H 0.042 0.958 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.917 3.083 19 H -0.240 1.240 20 H -0.293 1.293 21 H -0.211 1.211 22 C 0.087 3.913 23 C 0.468 3.532 24 O -0.533 6.533 25 O -0.502 6.502 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.113 0.887 29 H 0.192 0.808 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 21.053 3.703 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.162 4.162 3 C -0.090 4.090 4 C -0.078 4.078 5 C -0.096 4.096 6 C -0.134 4.134 7 C -0.066 4.066 8 Cl -0.049 7.049 9 C -0.144 4.144 10 C -0.126 4.126 11 C 0.310 3.690 12 O -0.495 6.495 13 N -0.161 5.161 14 C -0.456 4.456 15 H 0.060 0.940 16 C -0.189 4.189 17 N -0.545 5.545 18 Si 0.739 3.261 19 H -0.166 1.166 20 H -0.220 1.220 21 H -0.132 1.132 22 C -0.037 4.037 23 C 0.309 3.691 24 O -0.422 6.422 25 O -0.315 6.315 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.132 0.868 29 H 0.209 0.791 30 H 0.202 0.798 31 H 0.182 0.818 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.165 0.835 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.820 20.466 2.966 20.872 hybrid contribution 0.411 -1.522 0.124 1.581 sum -2.409 18.945 3.089 19.346 Atomic orbital electron populations 1.20730 0.87905 1.03252 1.03735 1.22173 0.98274 0.91932 1.03850 1.22428 0.90949 0.97919 0.97740 1.19386 0.94359 0.95854 0.98219 1.21691 0.92310 0.97774 0.97808 1.21315 0.95687 0.98175 0.98187 1.21230 0.84305 0.99175 1.01873 1.98346 1.11480 1.98253 1.96774 1.20936 0.94064 0.98400 1.00954 1.21886 0.94557 0.97540 0.98580 1.18782 0.80818 0.86915 0.82448 1.90676 1.64927 1.59536 1.34317 1.43088 1.43671 1.24140 1.05240 1.18506 1.06699 0.93640 1.26731 0.93973 1.26135 0.95951 1.00306 0.96508 1.69825 1.23243 1.25893 1.35553 0.86401 0.77615 0.81505 0.80576 1.16571 1.22006 1.13228 1.21779 0.93973 1.00039 0.87959 1.24131 0.87395 0.78320 0.79279 1.90718 1.53767 1.31772 1.65948 1.84473 1.47295 1.64631 1.35143 0.89705 0.94262 0.86815 0.79062 0.79833 0.81821 0.86657 0.86526 0.91052 0.87627 0.83484 0.71109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 10.03 71.23 0.71 -1.87 16 2 C -0.16 -5.14 4.44 -18.54 -0.08 -5.22 16 3 C -0.07 -1.72 8.31 23.85 0.20 -1.52 16 4 C -0.08 -2.18 4.84 -20.15 -0.10 -2.28 16 5 C -0.08 -1.61 9.40 22.58 0.21 -1.40 16 6 C -0.12 -2.64 9.31 22.25 0.21 -2.44 16 7 C -0.04 -1.17 5.82 22.42 0.13 -1.04 16 8 Cl -0.08 -2.15 28.95 -2.72 -0.08 -2.23 16 9 C -0.12 -4.44 9.43 22.25 0.21 -4.23 16 10 C -0.11 -3.98 8.02 22.58 0.18 -3.80 16 11 C 0.52 24.04 3.81 86.31 0.33 24.37 16 12 O -0.61 -34.47 15.24 -4.54 -0.07 -34.54 16 13 N -0.44 -21.16 1.80 -644.67 -1.16 -22.32 16 14 C -0.33 -19.38 9.50 84.14 0.80 -18.58 16 15 H 0.04 3.00 7.78 -2.91 -0.02 2.98 16 16 C 0.01 0.75 5.34 84.98 0.45 1.20 16 17 N -0.91 -54.80 13.95 21.69 0.30 -54.50 16 18 Si 0.92 39.21 24.88 68.60 1.71 40.92 16 19 H -0.24 -8.92 6.49 99.48 0.65 -8.28 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.21 -8.04 4.63 99.48 0.46 -7.58 16 22 C 0.09 3.29 4.36 85.63 0.37 3.66 16 23 C 0.47 16.71 8.32 71.24 0.59 17.30 16 24 O -0.53 -23.56 16.94 21.98 0.37 -23.19 16 25 O -0.50 -12.20 13.42 -51.43 -0.69 -12.89 16 26 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.04 1.26 7.97 -2.39 -0.02 1.24 16 28 H 0.11 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.12 5.29 4.85 -2.91 -0.01 5.28 16 34 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.11 4.16 2.74 -2.39 -0.01 4.15 16 36 H 0.15 4.24 5.71 -2.39 -0.01 4.23 16 37 H 0.43 6.26 9.10 -74.06 -0.67 5.59 16 Total: -1.00 -84.34 329.27 4.77 -79.57 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.16 Total: 25.02 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 4.22 Total: 4.15 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -0.86 Total: -76.82 kcal Atomic # 8 Polarization: -70.23 SS G_CDS: -0.39 Total: -70.61 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.71 Total: 40.92 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -84.34 4.77 -79.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833383747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.171 kcal (2) G-P(sol) polarization free energy of solvation -84.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds