Wall clock time and date at job start Tue Mar 31 2020 13:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46917 * 270.00104 * 3 2 1 5 5 H 1.48500 * 109.46842 * 29.99910 * 3 2 1 6 6 H 1.48498 * 109.47107 * 149.99946 * 3 2 1 7 7 C 1.38809 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99654 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00591 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00489 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47459 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47572 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47608 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00164 * 180.02562 * 13 12 11 15 15 O 1.21625 * 119.99705 * 359.97438 * 14 13 12 16 16 C 1.47269 * 119.99897 * 179.97438 * 14 13 12 17 17 C 1.35203 * 123.14072 * 179.72726 * 16 14 13 18 18 S 1.70941 * 108.82975 * 180.27164 * 17 16 14 19 19 C 1.70775 * 91.12839 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.72147 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47010 * 269.96178 * 20 19 18 22 22 F 1.39894 * 109.46742 * 29.96815 * 20 19 18 23 23 F 1.39900 * 109.46999 * 149.96323 * 20 19 18 24 24 N 1.28648 * 110.55905 * 0.02562 * 19 18 17 25 25 H 0.97005 * 120.00158 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99905 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47041 * 59.99748 * 10 9 7 28 28 H 1.09005 * 109.47226 * 300.00356 * 10 9 7 29 29 H 1.09000 * 109.46932 * 60.00010 * 11 10 9 30 30 H 1.08999 * 109.47270 * 300.00135 * 11 10 9 31 31 H 1.09000 * 109.46848 * 60.00125 * 12 11 10 32 32 H 1.08999 * 109.47069 * 300.00425 * 12 11 10 33 33 H 0.97004 * 119.99883 * 0.02562 * 13 12 11 34 34 H 1.07999 * 125.58775 * 0.27316 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 6 6.3813 -3.5163 0.0006 13 7 7.8216 -3.2487 0.0013 14 6 8.6974 -4.2731 0.0014 15 8 8.2920 -5.4198 0.0014 16 6 10.1453 -4.0040 0.0014 17 6 11.0789 -4.9820 0.0069 18 16 12.6302 -4.2639 0.0126 19 6 11.9434 -2.7003 0.0065 20 6 12.7323 -1.4163 0.0072 21 9 12.9702 -1.0158 1.3263 22 9 13.9526 -1.6185 -0.6462 23 9 12.0062 -0.4226 -0.6581 24 7 10.6589 -2.7711 0.0014 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8491 -3.0422 -0.8902 28 1 3.8484 -3.0427 0.8897 29 1 5.8796 -1.6198 0.8900 30 1 5.8796 -1.6197 -0.8900 31 1 6.1181 -4.0883 -0.8891 32 1 6.1179 -4.0875 0.8908 33 1 8.1450 -2.3342 0.0016 34 1 10.8776 -6.0431 0.0076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170259531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:39 Heat of formation + Delta-G solvation = -125.676210 kcal Electronic energy + Delta-G solvation = -23631.564100 eV Core-core repulsion = 19277.116719 eV Total energy + Delta-G solvation = -4354.447381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.066 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.79307 -48.36207 -48.22434 -41.14370 -39.15965 -36.27187 -34.56813 -32.33302 -31.95410 -30.15027 -28.23908 -26.52115 -24.64107 -22.77225 -21.95369 -21.31785 -20.69655 -19.85074 -19.19421 -18.65415 -18.15623 -17.57022 -17.12717 -16.15970 -15.97257 -15.42313 -15.20339 -15.00779 -14.91417 -14.69202 -14.47642 -14.39453 -14.37826 -14.17043 -14.09488 -13.57125 -13.30876 -12.82928 -12.71890 -12.59972 -12.04248 -11.23123 -11.05591 -10.93411 -10.86663 -10.72268 -10.62857 -10.40788 -10.14460 -9.92789 -9.59764 -9.23588 -8.90618 -7.24964 -5.77125 -3.13341 -0.47453 0.14932 0.65809 1.12234 1.66731 2.74664 2.86640 2.94239 3.37474 3.39869 3.40141 3.45360 3.64243 3.81766 4.41438 4.46556 4.58836 4.86765 4.98987 5.16380 5.47037 5.53134 5.73830 5.88189 5.91683 6.10710 6.20254 6.40184 6.66755 6.70020 7.24537 7.84970 7.98752 8.41650 9.20359 9.92551 10.11935 11.41192 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002432 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.133508 B =11510.182274 C =12945.904097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.121 3.879 13 N -0.706 5.706 14 C 0.592 3.408 15 O -0.529 6.529 16 C 0.013 3.987 17 C -0.203 4.203 18 S 0.323 5.677 19 C -0.106 4.106 20 C 0.557 3.443 21 F -0.160 7.160 22 F -0.164 7.164 23 F -0.152 7.152 24 N -0.384 5.384 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.635 -8.600 0.016 35.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.002 4.002 13 N -0.356 5.356 14 C 0.374 3.626 15 O -0.406 6.406 16 C -0.124 4.124 17 C -0.346 4.346 18 S 0.579 5.421 19 C -0.384 4.384 20 C 0.499 3.501 21 F -0.141 7.141 22 F -0.145 7.145 23 F -0.133 7.133 24 N -0.101 5.101 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.246 0.754 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 34.782 -9.314 0.022 36.007 hybrid contribution -0.243 1.789 0.009 1.805 sum 34.539 -7.525 0.031 35.349 Atomic orbital electron populations 1.69703 1.05112 1.25863 1.57502 1.24687 0.95270 0.97275 1.01982 0.86521 0.79181 0.84872 0.77785 1.21040 1.21682 1.20343 1.19066 0.80551 0.94831 1.43125 0.89137 1.42687 1.04127 1.02159 1.91296 1.20487 0.87491 0.89570 0.99107 1.22010 0.97175 0.96065 1.02888 1.21460 0.77346 0.98303 1.03090 1.45923 1.07103 1.09665 1.72945 1.16870 0.83006 0.85358 0.77345 1.90856 1.78474 1.20705 1.50557 1.20539 0.96964 0.86062 1.08815 1.27106 0.96656 1.07450 1.03356 1.82992 1.04826 0.94124 1.60166 1.26877 0.95400 1.00193 1.15916 1.16835 0.76800 0.81716 0.74745 1.93288 1.94398 1.91277 1.35166 1.93260 1.45026 1.94907 1.81310 1.93296 1.77177 1.62478 1.80368 1.66649 1.09265 1.25020 1.09188 0.93024 0.80645 0.95123 0.95174 0.91175 0.91144 0.90673 0.90693 0.75401 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 22.24 27.74 -169.99 -4.71 17.53 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.76 -18.14 5.41 -59.91 -0.32 -18.46 16 10 C 0.16 3.05 6.26 -4.05 -0.03 3.03 16 11 C -0.14 -2.05 5.44 -26.73 -0.15 -2.20 16 12 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 13 N -0.71 -8.35 5.55 -61.43 -0.34 -8.69 16 14 C 0.59 7.32 7.80 -12.59 -0.10 7.23 16 15 O -0.53 -7.88 16.71 5.26 0.09 -7.79 16 16 C 0.01 0.13 6.70 -84.52 -0.57 -0.44 16 17 C -0.20 -1.39 10.62 29.65 0.31 -1.08 16 18 S 0.32 1.53 22.57 -107.50 -2.43 -0.90 16 19 C -0.11 -0.83 6.71 -13.61 -0.09 -0.92 16 20 C 0.56 4.30 3.55 36.01 0.13 4.43 16 21 F -0.16 -1.29 17.30 2.25 0.04 -1.25 16 22 F -0.16 -1.07 16.98 2.25 0.04 -1.03 16 23 F -0.15 -1.42 17.21 2.25 0.04 -1.38 16 24 N -0.38 -3.80 10.00 -8.51 -0.09 -3.89 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.41 4.40 7.99 -40.82 -0.33 4.07 16 34 H 0.21 1.05 8.03 -52.49 -0.42 0.63 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -34.11 329.67 -5.81 -39.92 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.10 Total: 5.45 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.76 Total: 4.36 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.03 Total: -59.89 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.12 Total: -3.66 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.43 Total: -0.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.11 -5.81 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170259531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.757 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds