Wall clock time and date at job start Tue Mar 31 2020 13:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46917 * 270.00104 * 3 2 1 5 5 H 1.48500 * 109.46842 * 29.99910 * 3 2 1 6 6 H 1.48498 * 109.47107 * 149.99946 * 3 2 1 7 7 C 1.38809 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99654 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00591 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00489 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47459 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47572 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47608 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00164 * 180.02562 * 13 12 11 15 15 O 1.21625 * 119.99705 * 359.97438 * 14 13 12 16 16 C 1.47269 * 119.99897 * 179.97438 * 14 13 12 17 17 C 1.35203 * 123.14072 * 179.72726 * 16 14 13 18 18 S 1.70941 * 108.82975 * 180.27164 * 17 16 14 19 19 C 1.70775 * 91.12839 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.72147 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47010 * 269.96178 * 20 19 18 22 22 F 1.39894 * 109.46742 * 29.96815 * 20 19 18 23 23 F 1.39900 * 109.46999 * 149.96323 * 20 19 18 24 24 N 1.28648 * 110.55905 * 0.02562 * 19 18 17 25 25 H 0.97005 * 120.00158 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99905 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47041 * 59.99748 * 10 9 7 28 28 H 1.09005 * 109.47226 * 300.00356 * 10 9 7 29 29 H 1.09000 * 109.46932 * 60.00010 * 11 10 9 30 30 H 1.08999 * 109.47270 * 300.00135 * 11 10 9 31 31 H 1.09000 * 109.46848 * 60.00125 * 12 11 10 32 32 H 1.08999 * 109.47069 * 300.00425 * 12 11 10 33 33 H 0.97004 * 119.99883 * 0.02562 * 13 12 11 34 34 H 1.07999 * 125.58775 * 0.27316 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 6 6.3813 -3.5163 0.0006 13 7 7.8216 -3.2487 0.0013 14 6 8.6974 -4.2731 0.0014 15 8 8.2920 -5.4198 0.0014 16 6 10.1453 -4.0040 0.0014 17 6 11.0789 -4.9820 0.0069 18 16 12.6302 -4.2639 0.0126 19 6 11.9434 -2.7003 0.0065 20 6 12.7323 -1.4163 0.0072 21 9 12.9702 -1.0158 1.3263 22 9 13.9526 -1.6185 -0.6462 23 9 12.0062 -0.4226 -0.6581 24 7 10.6589 -2.7711 0.0014 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8491 -3.0422 -0.8902 28 1 3.8484 -3.0427 0.8897 29 1 5.8796 -1.6198 0.8900 30 1 5.8796 -1.6197 -0.8900 31 1 6.1181 -4.0883 -0.8891 32 1 6.1179 -4.0875 0.8908 33 1 8.1450 -2.3342 0.0016 34 1 10.8776 -6.0431 0.0076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170259531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:38 Heat of formation + Delta-G solvation = -151.387887 kcal Electronic energy + Delta-G solvation = -23632.679042 eV Core-core repulsion = 19277.116719 eV Total energy + Delta-G solvation = -4355.562323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.37660 -48.92132 -48.84763 -41.84750 -40.01624 -37.68003 -36.06222 -33.92552 -32.85992 -31.75964 -28.83385 -27.74454 -25.83040 -24.03706 -23.06537 -22.71906 -21.38869 -20.65203 -19.77907 -19.63254 -19.22545 -18.77194 -17.93649 -17.07751 -17.00881 -16.53411 -16.29625 -15.84528 -15.74946 -15.69104 -15.29593 -15.27199 -15.13216 -15.00006 -14.98781 -14.84351 -14.74617 -13.92424 -13.90336 -13.80045 -13.26031 -12.90172 -12.59155 -12.56358 -12.13478 -12.03521 -11.82798 -11.48213 -11.35939 -11.15887 -10.99187 -10.51450 -10.16827 -9.32961 -8.04385 -5.39172 -1.00316 -0.32538 0.13879 0.40641 1.10074 1.37928 1.42156 1.49464 1.99821 2.03037 2.23581 2.47830 2.80088 3.06564 3.16644 3.26906 3.52089 3.79879 3.89008 4.03858 4.19469 4.22544 4.38407 4.66322 4.68474 4.84290 5.17228 5.25852 5.28466 5.73523 5.78902 6.19372 6.35879 6.94749 7.05953 7.80986 8.00851 9.17065 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002432 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.133508 B =11510.182274 C =12945.904097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.241 4.241 8 H 0.055 0.945 9 N -0.760 5.760 10 C 0.155 3.845 11 C -0.125 4.125 12 C 0.130 3.870 13 N -0.703 5.703 14 C 0.591 3.409 15 O -0.562 6.562 16 C -0.015 4.015 17 C -0.202 4.202 18 S 0.430 5.570 19 C -0.134 4.134 20 C 0.560 3.440 21 F -0.163 7.163 22 F -0.156 7.156 23 F -0.165 7.165 24 N -0.408 5.408 25 H 0.259 0.741 26 H 0.368 0.632 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.416 0.584 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.227 -8.428 0.041 39.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.406 5.406 10 C 0.029 3.971 11 C -0.163 4.163 12 C 0.006 3.994 13 N -0.353 5.353 14 C 0.375 3.625 15 O -0.441 6.441 16 C -0.152 4.152 17 C -0.345 4.345 18 S 0.686 5.314 19 C -0.411 4.411 20 C 0.502 3.498 21 F -0.145 7.145 22 F -0.137 7.137 23 F -0.146 7.146 24 N -0.125 5.125 25 H 0.068 0.932 26 H 0.201 0.799 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.253 0.747 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 38.448 -9.144 0.048 39.520 hybrid contribution -1.267 1.569 -0.003 2.017 sum 37.181 -7.575 0.045 37.944 Atomic orbital electron populations 1.69894 1.07252 1.26853 1.59462 1.25589 0.96216 1.01577 1.02371 0.85337 0.78686 0.79100 0.78219 1.20254 1.22169 1.17317 1.19053 0.82755 0.93588 1.41758 0.92648 1.42684 1.02547 1.04245 1.91120 1.20648 0.90159 0.87558 0.98746 1.21779 0.93770 0.97004 1.03768 1.21235 0.78062 0.97223 1.02849 1.45828 1.06544 1.10112 1.72847 1.17192 0.84172 0.84780 0.76327 1.90829 1.79347 1.21780 1.52183 1.20183 0.95903 0.87065 1.12004 1.27460 0.97797 1.08058 1.01159 1.82679 1.01616 0.90376 1.56740 1.26992 0.95420 1.01884 1.16804 1.16826 0.76942 0.81549 0.74518 1.93280 1.94429 1.91346 1.35398 1.93273 1.44476 1.94825 1.81136 1.93266 1.77558 1.63133 1.80626 1.66566 1.10445 1.25404 1.10124 0.93233 0.79882 0.95317 0.95413 0.90330 0.90196 0.90991 0.91039 0.74673 0.76228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 45.58 27.74 68.60 1.90 47.49 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 7 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -35.72 5.41 -343.47 -1.86 -37.58 16 10 C 0.16 5.78 6.26 86.38 0.54 6.33 16 11 C -0.13 -3.38 5.44 30.59 0.17 -3.21 16 12 C 0.13 3.21 5.67 86.38 0.49 3.70 16 13 N -0.70 -15.93 5.55 -466.52 -2.59 -18.52 16 14 C 0.59 14.19 7.80 86.62 0.68 14.86 16 15 O -0.56 -16.50 16.71 -4.11 -0.07 -16.57 16 16 C -0.01 -0.27 6.70 40.56 0.27 0.00 16 17 C -0.20 -2.27 10.62 67.12 0.71 -1.56 16 18 S 0.43 2.65 22.57 -56.49 -1.27 1.37 16 19 C -0.13 -1.84 6.71 88.58 0.59 -1.25 16 20 C 0.56 7.72 3.55 71.24 0.25 7.97 16 21 F -0.16 -2.38 17.30 44.97 0.78 -1.60 16 22 F -0.16 -1.69 16.98 44.97 0.76 -0.93 16 23 F -0.16 -2.91 17.21 44.97 0.77 -2.14 16 24 N -0.41 -7.50 10.00 -180.83 -1.81 -9.31 16 25 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 26 H 0.37 16.19 5.53 -92.70 -0.51 15.68 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.42 8.41 7.99 -92.71 -0.74 7.67 16 34 H 0.22 1.68 8.03 -2.91 -0.02 1.65 16 Total: -1.00 -74.99 329.67 1.85 -73.14 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.13 Total: 18.06 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.05 Total: 10.23 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -5.95 Total: -129.05 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.07 Total: -16.57 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 2.32 Total: -4.67 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.27 Total: 1.37 kcal Total: -74.99 1.85 -73.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170259531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.244 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds