Wall clock time and date at job start Tue Mar 31 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38237 * 120.00332 * 2 1 4 4 C 1.50700 * 119.99807 * 359.97438 * 3 2 1 5 5 C 1.38219 * 120.00791 * 180.25807 * 3 2 1 6 6 C 1.50699 * 119.99115 * 179.76770 * 5 3 2 7 7 N 1.46904 * 109.47193 * 285.51996 * 6 5 3 8 8 C 1.47957 * 111.00033 * 184.65401 * 7 6 5 9 9 C 1.53940 * 86.18032 * 137.58206 * 8 7 6 10 10 C 1.50698 * 113.72907 * 221.81754 * 9 8 7 11 11 H 1.07995 * 120.00636 * 358.09475 * 10 9 8 12 12 C 1.37883 * 119.99699 * 178.10015 * 10 9 8 13 13 N 1.31517 * 120.00086 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99743 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.47269 * 90.00318 * 14 12 10 16 16 H 1.48503 * 109.46807 * 209.99877 * 14 12 10 17 17 H 1.48500 * 109.47365 * 329.99750 * 14 12 10 18 18 C 1.48302 * 111.00182 * 284.00893 * 7 6 5 19 19 C 1.38263 * 120.01841 * 359.48428 * 5 3 2 20 20 C 1.38193 * 120.01034 * 0.23840 * 19 5 3 21 21 C 1.38296 * 120.00340 * 179.72271 * 2 1 3 22 22 Br 1.89096 * 120.01237 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.46837 * 270.27429 * 1 2 3 24 24 H 1.09002 * 109.46917 * 30.27973 * 1 2 3 25 25 H 1.09000 * 109.46842 * 150.27488 * 1 2 3 26 26 H 1.09003 * 109.47234 * 275.07666 * 4 3 2 27 27 H 1.08999 * 109.46816 * 35.07196 * 4 3 2 28 28 H 1.08999 * 109.47631 * 155.07600 * 4 3 2 29 29 H 1.08999 * 109.47225 * 165.51967 * 6 5 3 30 30 H 1.09001 * 109.47401 * 45.51686 * 6 5 3 31 31 H 1.08996 * 113.75804 * 23.26350 * 8 7 6 32 32 H 1.08996 * 113.85482 * 251.91014 * 8 7 6 33 33 H 1.08999 * 113.73401 * 90.63348 * 9 8 7 34 34 H 0.97001 * 119.99598 * 180.02562 * 13 12 10 35 35 H 1.08991 * 113.85963 * 108.14004 * 18 7 6 36 36 H 1.09001 * 113.75658 * 336.67544 * 18 7 6 37 37 H 1.08001 * 119.99133 * 180.25764 * 19 5 3 38 38 H 1.08001 * 120.00199 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 1.4448 2.5023 -0.0006 5 6 3.5805 1.1972 -0.0054 6 6 4.3337 2.5025 -0.0107 7 7 4.2522 3.1095 -1.3460 8 6 5.0730 4.3382 -1.4209 9 6 5.5218 3.8307 -2.8032 10 6 6.9932 4.0182 -3.0697 11 1 7.6182 4.5012 -2.3332 12 6 7.5414 3.5732 -4.2539 13 7 8.8254 3.7373 -4.4868 14 14 6.4605 2.7372 -5.5276 15 1 5.9085 3.7574 -6.4547 16 1 7.2687 1.7562 -6.2956 17 1 5.3451 2.0333 -4.8451 18 6 5.1582 2.4226 -2.2982 19 6 4.2723 0.0002 0.0000 20 6 3.5821 -1.1970 0.0058 21 6 2.1986 -1.1976 0.0058 22 35 1.2536 -2.8355 0.0145 23 1 -0.3633 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8925 -0.5096 26 1 1.1848 2.7712 -1.0244 27 1 0.5346 2.3965 0.5896 28 1 2.0701 3.2830 0.4325 29 1 5.3781 2.3204 0.2425 30 1 3.8945 3.1785 0.7230 31 1 5.8760 4.3754 -0.6848 32 1 4.4883 5.2573 -1.4592 33 1 4.8937 4.1783 -3.6233 34 1 9.2110 3.4245 -5.3201 35 1 4.6400 1.8114 -3.0370 36 1 5.9861 1.9009 -1.8181 37 1 5.3523 0.0008 0.0000 38 1 4.1226 -2.1320 0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233217994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:50 Heat of formation + Delta-G solvation = 51.577245 kcal Electronic energy + Delta-G solvation = -19373.893738 eV Core-core repulsion = 16456.058334 eV Total energy + Delta-G solvation = -2917.835403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 323.058 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08278 -38.61079 -33.92124 -33.49446 -32.46471 -30.64629 -29.17747 -27.58701 -26.36494 -25.44846 -25.18789 -22.37552 -20.99432 -20.14246 -18.62920 -17.05765 -16.26718 -16.05674 -15.19753 -14.86551 -14.52650 -14.28454 -13.79829 -13.42932 -13.05228 -12.86575 -12.76301 -12.68532 -12.53469 -12.18729 -12.12496 -11.80562 -11.73699 -11.08308 -10.97570 -10.88265 -10.71539 -10.32057 -10.20087 -10.01594 -9.93838 -9.58159 -9.18173 -8.60487 -8.59620 -8.42866 -8.09153 -6.12941 -4.13444 1.10863 1.31060 1.58255 3.27990 3.36912 3.41168 3.55938 4.40110 4.64333 4.68163 4.76161 4.91770 5.12085 5.16238 5.22738 5.37537 5.46916 5.48837 5.60944 5.67539 5.73910 5.82758 5.85469 5.91656 6.03281 6.08816 6.20522 6.22153 6.28601 6.41162 6.41965 6.46443 6.67961 6.73425 6.87143 6.97781 7.33643 7.67264 7.77714 8.45561 8.89806 9.50155 10.99604 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.003564 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.668337 B = 7854.890675 C = 8548.058725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.059 4.059 4 C -0.107 4.107 5 C -0.049 4.049 6 C 0.055 3.945 7 N -0.481 5.481 8 C 0.012 3.988 9 C -0.001 4.001 10 C -0.515 4.515 11 H 0.073 0.927 12 C 0.075 3.925 13 N -0.899 5.899 14 Si 0.872 3.128 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.254 1.254 18 C -0.003 4.003 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.094 4.094 22 Br -0.062 7.062 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 -10.980 11.691 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.061 4.061 4 C -0.164 4.164 5 C -0.049 4.049 6 C -0.073 4.073 7 N -0.203 5.203 8 C -0.116 4.116 9 C -0.021 4.021 10 C -0.553 4.553 11 H 0.091 0.909 12 C -0.128 4.128 13 N -0.537 5.537 14 Si 0.699 3.301 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.179 1.179 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.173 4.173 22 Br 0.023 6.977 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.042 -11.599 11.454 24.315 hybrid contribution 0.831 -0.380 -0.507 1.045 sum -17.211 -11.978 10.947 23.655 Atomic orbital electron populations 1.20970 0.90653 1.03584 1.02692 1.19579 0.96275 0.91084 0.99636 1.19563 0.93010 0.94505 0.98976 1.20776 0.99021 0.93732 1.02850 1.19854 0.93190 0.95032 0.96860 1.21615 0.97960 0.92723 0.95026 1.68659 1.42454 1.04867 1.04365 1.23882 0.94702 0.93216 0.99824 1.20732 0.97327 0.91067 0.92942 1.20974 0.91116 1.39399 1.03764 0.90852 1.24995 0.94765 0.95118 0.97891 1.69912 1.11578 1.46763 1.25410 0.86948 0.81325 0.79970 0.81856 1.20316 1.21523 1.17855 1.24494 0.93598 0.99793 0.95291 1.21099 1.00202 0.91354 1.00279 1.20977 0.91912 0.98839 0.99771 1.21581 0.94576 0.90595 1.10559 1.96610 1.75915 1.27348 1.97789 0.90817 0.90801 0.90820 0.90367 0.92204 0.90909 0.93292 0.90197 0.91932 0.91069 0.93016 0.92604 0.91524 0.91730 0.85261 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.75 36.01 0.32 -0.92 16 2 C -0.06 -0.81 5.88 -104.60 -0.62 -1.43 16 3 C -0.06 -0.80 5.88 -104.63 -0.62 -1.41 16 4 C -0.11 -1.25 8.59 36.01 0.31 -0.94 16 5 C -0.05 -0.71 5.09 -104.62 -0.53 -1.24 16 6 C 0.05 0.83 4.12 -4.97 -0.02 0.81 16 7 N -0.48 -8.59 6.07 -239.47 -1.45 -10.05 16 8 C 0.01 0.23 7.54 -2.76 -0.02 0.21 16 9 C 0.00 -0.03 2.89 -90.83 -0.26 -0.29 16 10 C -0.51 -13.95 9.33 -34.44 -0.32 -14.27 16 11 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 14 Si 0.87 21.06 27.08 -169.99 -4.60 16.46 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.25 -5.84 5.27 56.52 0.30 -5.55 16 18 C 0.00 -0.06 6.29 -2.56 -0.02 -0.08 16 19 C -0.11 -1.53 9.67 -39.59 -0.38 -1.92 16 20 C -0.10 -1.24 9.79 -39.56 -0.39 -1.63 16 21 C -0.09 -1.21 6.22 -39.52 -0.25 -1.46 16 22 Br -0.06 -0.69 31.79 -68.01 -2.16 -2.85 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.69 6.81 -51.93 -0.35 0.33 16 25 H 0.07 0.73 6.65 -51.93 -0.35 0.38 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.57 7.00 -51.93 -0.36 0.21 16 28 H 0.07 0.86 6.08 -51.93 -0.32 0.54 16 29 H 0.05 0.76 7.48 -51.93 -0.39 0.37 16 30 H 0.08 1.09 6.70 -51.93 -0.35 0.74 16 31 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.43 6.82 -51.93 -0.35 1.07 16 36 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 37 H 0.13 1.69 8.00 -52.49 -0.42 1.27 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -28.88 320.95 -10.92 -39.80 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.42 Total: 0.55 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.89 Total: -22.57 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.68 Total: -36.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.60 Total: 16.46 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.16 Total: -2.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.88 -10.92 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233217994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.381 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds