Wall clock time and date at job start Tue Mar 31 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38237 * 120.00332 * 2 1 4 4 C 1.50700 * 119.99807 * 359.97438 * 3 2 1 5 5 C 1.38219 * 120.00791 * 180.25807 * 3 2 1 6 6 C 1.50699 * 119.99115 * 179.76770 * 5 3 2 7 7 N 1.46904 * 109.47193 * 285.51996 * 6 5 3 8 8 C 1.47957 * 111.00033 * 184.65401 * 7 6 5 9 9 C 1.53940 * 86.18032 * 137.58206 * 8 7 6 10 10 C 1.50698 * 113.72907 * 221.81754 * 9 8 7 11 11 H 1.07995 * 120.00636 * 358.09475 * 10 9 8 12 12 C 1.37883 * 119.99699 * 178.10015 * 10 9 8 13 13 N 1.31517 * 120.00086 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99743 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.47269 * 90.00318 * 14 12 10 16 16 H 1.48503 * 109.46807 * 209.99877 * 14 12 10 17 17 H 1.48500 * 109.47365 * 329.99750 * 14 12 10 18 18 C 1.48302 * 111.00182 * 284.00893 * 7 6 5 19 19 C 1.38263 * 120.01841 * 359.48428 * 5 3 2 20 20 C 1.38193 * 120.01034 * 0.23840 * 19 5 3 21 21 C 1.38296 * 120.00340 * 179.72271 * 2 1 3 22 22 Br 1.89096 * 120.01237 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.46837 * 270.27429 * 1 2 3 24 24 H 1.09002 * 109.46917 * 30.27973 * 1 2 3 25 25 H 1.09000 * 109.46842 * 150.27488 * 1 2 3 26 26 H 1.09003 * 109.47234 * 275.07666 * 4 3 2 27 27 H 1.08999 * 109.46816 * 35.07196 * 4 3 2 28 28 H 1.08999 * 109.47631 * 155.07600 * 4 3 2 29 29 H 1.08999 * 109.47225 * 165.51967 * 6 5 3 30 30 H 1.09001 * 109.47401 * 45.51686 * 6 5 3 31 31 H 1.08996 * 113.75804 * 23.26350 * 8 7 6 32 32 H 1.08996 * 113.85482 * 251.91014 * 8 7 6 33 33 H 1.08999 * 113.73401 * 90.63348 * 9 8 7 34 34 H 0.97001 * 119.99598 * 180.02562 * 13 12 10 35 35 H 1.08991 * 113.85963 * 108.14004 * 18 7 6 36 36 H 1.09001 * 113.75658 * 336.67544 * 18 7 6 37 37 H 1.08001 * 119.99133 * 180.25764 * 19 5 3 38 38 H 1.08001 * 120.00199 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 1.4448 2.5023 -0.0006 5 6 3.5805 1.1972 -0.0054 6 6 4.3337 2.5025 -0.0107 7 7 4.2522 3.1095 -1.3460 8 6 5.0730 4.3382 -1.4209 9 6 5.5218 3.8307 -2.8032 10 6 6.9932 4.0182 -3.0697 11 1 7.6182 4.5012 -2.3332 12 6 7.5414 3.5732 -4.2539 13 7 8.8254 3.7373 -4.4868 14 14 6.4605 2.7372 -5.5276 15 1 5.9085 3.7574 -6.4547 16 1 7.2687 1.7562 -6.2956 17 1 5.3451 2.0333 -4.8451 18 6 5.1582 2.4226 -2.2982 19 6 4.2723 0.0002 0.0000 20 6 3.5821 -1.1970 0.0058 21 6 2.1986 -1.1976 0.0058 22 35 1.2536 -2.8355 0.0145 23 1 -0.3633 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8925 -0.5096 26 1 1.1848 2.7712 -1.0244 27 1 0.5346 2.3965 0.5896 28 1 2.0701 3.2830 0.4325 29 1 5.3781 2.3204 0.2425 30 1 3.8945 3.1785 0.7230 31 1 5.8760 4.3754 -0.6848 32 1 4.4883 5.2573 -1.4592 33 1 4.8937 4.1783 -3.6233 34 1 9.2110 3.4245 -5.3201 35 1 4.6400 1.8114 -3.0370 36 1 5.9861 1.9009 -1.8181 37 1 5.3523 0.0008 0.0000 38 1 4.1226 -2.1320 0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233217994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:50 Heat of formation + Delta-G solvation = 35.032310 kcal Electronic energy + Delta-G solvation = -19374.611180 eV Core-core repulsion = 16456.058334 eV Total energy + Delta-G solvation = -2918.552845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 323.058 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24058 -40.01114 -35.20628 -34.43334 -34.34625 -31.82873 -30.41409 -28.79745 -27.29980 -26.99796 -26.74980 -23.92035 -21.96342 -21.27715 -20.35110 -19.07058 -17.34875 -17.10760 -16.77381 -16.31721 -15.80214 -15.60301 -15.05012 -14.92600 -14.54112 -14.09270 -13.97285 -13.64819 -13.51763 -13.39030 -13.30879 -13.10839 -13.05366 -12.73815 -12.39372 -11.96832 -11.88891 -11.79701 -11.67812 -11.54967 -11.27982 -11.11906 -11.07329 -10.68092 -9.67925 -9.55948 -9.44002 -8.29743 -6.34073 0.08479 0.32027 0.63169 1.36311 1.39474 1.50783 2.36703 2.52600 3.04842 3.25674 3.67514 3.78139 3.86335 4.12693 4.18553 4.19365 4.31340 4.39194 4.48715 4.62469 4.64809 4.71796 4.74519 4.76822 4.86533 4.91430 4.94450 4.96863 5.04661 5.19851 5.20909 5.26932 5.38123 5.49594 5.51154 5.65307 5.69000 5.89923 6.24308 6.30037 6.72181 7.32895 8.86356 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.003564 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.668337 B = 7854.890675 C = 8548.058725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.067 4.067 4 C -0.104 4.104 5 C -0.066 4.066 6 C 0.058 3.942 7 N -0.467 5.467 8 C 0.022 3.978 9 C -0.016 4.016 10 C -0.515 4.515 11 H 0.035 0.965 12 C 0.018 3.982 13 N -0.949 5.949 14 Si 0.935 3.065 15 H -0.271 1.271 16 H -0.291 1.291 17 H -0.235 1.235 18 C 0.008 3.992 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.104 4.104 22 Br -0.046 7.046 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.129 0.871 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.983 -11.830 12.140 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C -0.068 4.068 4 C -0.161 4.161 5 C -0.067 4.067 6 C -0.069 4.069 7 N -0.190 5.190 8 C -0.106 4.106 9 C -0.035 4.035 10 C -0.553 4.553 11 H 0.053 0.947 12 C -0.180 4.180 13 N -0.589 5.589 14 Si 0.759 3.241 15 H -0.196 1.196 16 H -0.217 1.217 17 H -0.158 1.158 18 C -0.121 4.121 19 C -0.142 4.142 20 C -0.121 4.121 21 C -0.183 4.183 22 Br 0.040 6.960 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.918 -12.446 11.925 27.105 hybrid contribution 1.723 -0.124 -0.544 1.811 sum -19.195 -12.571 11.381 25.612 Atomic orbital electron populations 1.21027 0.88765 1.04168 1.03803 1.19907 0.97714 0.90713 0.98703 1.19801 0.92718 0.95641 0.98642 1.20786 0.99759 0.92658 1.02873 1.19856 0.93851 0.94580 0.98423 1.21608 0.98030 0.93652 0.93656 1.68603 1.40860 1.03867 1.05625 1.23786 0.94985 0.94633 0.97246 1.20772 0.94307 0.93387 0.95072 1.21236 0.93265 1.38083 1.02716 0.94671 1.25837 0.95878 0.96025 1.00220 1.70056 1.13673 1.48843 1.26322 0.85934 0.79921 0.79035 0.79168 1.19633 1.21700 1.15798 1.24215 0.93793 0.98240 0.95900 1.21203 1.00402 0.91785 1.00827 1.21154 0.92318 0.99059 0.99535 1.21820 0.94795 0.91623 1.10109 1.96619 1.75445 1.26220 1.97723 0.89331 0.89795 0.90675 0.90913 0.89946 0.91111 0.93999 0.88207 0.92361 0.88930 0.92902 0.92574 0.91797 0.92768 0.85315 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.75 71.24 0.62 -1.45 16 2 C -0.07 -1.58 5.88 -19.85 -0.12 -1.69 16 3 C -0.07 -1.64 5.88 -19.87 -0.12 -1.76 16 4 C -0.10 -2.13 8.59 71.24 0.61 -1.52 16 5 C -0.07 -1.82 5.09 -19.86 -0.10 -1.93 16 6 C 0.06 1.68 4.12 85.56 0.35 2.03 16 7 N -0.47 -15.85 6.07 -911.56 -5.54 -21.39 16 8 C 0.02 0.80 7.54 86.41 0.65 1.45 16 9 C -0.02 -0.72 2.89 -10.89 -0.03 -0.75 16 10 C -0.51 -28.48 9.33 25.60 0.24 -28.24 16 11 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 12 C 0.02 1.02 5.47 84.66 0.46 1.49 16 13 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 14 Si 0.94 43.47 27.08 68.60 1.86 45.33 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.23 -10.07 5.27 99.48 0.52 -9.54 16 18 C 0.01 0.31 6.29 86.35 0.54 0.85 16 19 C -0.12 -3.30 9.67 22.27 0.22 -3.09 16 20 C -0.10 -2.49 9.79 22.29 0.22 -2.27 16 21 C -0.10 -2.48 6.22 22.31 0.14 -2.34 16 22 Br -0.05 -0.92 31.79 -20.37 -0.65 -1.56 16 23 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.27 6.81 -2.39 -0.02 1.26 16 25 H 0.07 1.27 6.65 -2.39 -0.02 1.25 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.28 7.00 -2.39 -0.02 1.27 16 28 H 0.07 1.46 6.08 -2.39 -0.01 1.45 16 29 H 0.04 1.27 7.48 -2.39 -0.02 1.25 16 30 H 0.10 2.48 6.70 -2.39 -0.02 2.46 16 31 H 0.06 2.19 7.83 -2.39 -0.02 2.17 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.06 2.61 6.82 -2.39 -0.02 2.60 16 36 H 0.05 2.28 7.65 -2.39 -0.02 2.27 16 37 H 0.13 3.35 8.00 -2.91 -0.02 3.33 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -62.34 320.95 0.53 -61.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.87 Total: 13.26 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.69 Total: -39.21 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -5.24 Total: -79.62 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.86 Total: 45.33 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.65 Total: -1.56 kcal Total: -62.34 0.53 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233217994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.840 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds