Wall clock time and date at job start Tue Mar 31 2020 13:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47182 * 2 1 4 4 C 1.36556 * 127.17194 * 274.46690 * 3 2 1 5 5 S 1.76195 * 126.38694 * 359.97438 * 4 3 2 6 6 C 1.80995 * 100.00307 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47368 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99580 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00162 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99768 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47077 * 60.00114 * 11 9 7 13 13 H 1.48497 * 109.47120 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47434 * 300.00102 * 11 9 7 15 15 N 1.31449 * 107.23392 * 179.97438 * 4 3 2 16 16 N 1.28514 * 110.07744 * 0.02562 * 15 4 3 17 17 C 1.31264 * 109.96264 * 359.97438 * 16 15 4 18 18 C 1.47835 * 126.46727 * 179.97438 * 17 16 15 19 19 C 1.39597 * 120.13718 * 340.85428 * 18 17 16 20 20 C 1.37948 * 119.88059 * 179.97438 * 19 18 17 21 21 C 1.38355 * 120.15591 * 359.97324 * 20 19 18 22 22 C 1.38451 * 120.28217 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 119.94173 * 180.02562 * 22 21 20 24 24 C 1.38095 * 120.11784 * 359.79245 * 22 21 20 25 25 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47178 * 299.99620 * 1 2 3 27 27 H 1.09001 * 109.47583 * 59.99574 * 1 2 3 28 28 H 1.09001 * 109.47178 * 240.00380 * 2 1 3 29 29 H 1.08997 * 109.47128 * 120.00252 * 2 1 3 30 30 H 1.09005 * 109.47184 * 299.99622 * 6 5 4 31 31 H 1.08997 * 109.46972 * 59.99885 * 6 5 4 32 32 H 0.96997 * 119.99679 * 179.97438 * 10 9 7 33 33 H 1.07999 * 120.06280 * 359.94748 * 19 18 17 34 34 H 1.08000 * 119.92149 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.85826 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.08338 * 180.25129 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2135 2.1874 -1.0848 5 16 1.9237 1.7609 -2.7696 6 6 2.4037 3.3101 -3.5731 7 6 2.2326 3.1766 -5.0645 8 1 1.8711 2.2501 -5.4857 9 6 2.5386 4.2368 -5.8911 10 7 2.9793 5.3647 -5.3782 11 14 2.3272 4.0710 -7.7397 12 1 0.9062 3.7722 -8.0506 13 1 2.7209 5.3421 -8.3989 14 1 3.1859 2.9672 -8.2392 15 7 2.6578 3.3410 -0.6379 16 7 2.7533 3.3105 0.6433 17 6 2.3757 2.1366 1.0931 18 6 2.3417 1.7068 2.5072 19 6 3.0864 2.3946 3.4669 20 6 3.0504 1.9894 4.7850 21 6 2.2779 0.9037 5.1575 22 6 1.5359 0.2173 4.2113 23 17 0.5691 -1.1433 4.6885 24 6 1.5597 0.6161 2.8894 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7730 4.1201 -3.2066 31 1 3.4466 3.5298 -3.3449 32 1 3.1949 6.1104 -5.9598 33 1 3.6900 3.2423 3.1779 34 1 3.6266 2.5208 5.5279 35 1 2.2529 0.5908 6.1908 36 1 0.9775 0.0828 2.1525 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072527403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:14 Heat of formation + Delta-G solvation = 88.127262 kcal Electronic energy + Delta-G solvation = -21487.695430 eV Core-core repulsion = 18125.085168 eV Total energy + Delta-G solvation = -3362.610262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.57202 -39.46931 -36.82461 -35.84243 -33.22593 -32.57610 -31.18395 -30.60631 -29.34026 -28.51189 -24.67985 -23.66790 -23.29413 -23.01929 -21.71046 -20.76382 -17.99179 -17.18631 -16.62243 -16.22693 -16.06993 -15.92744 -15.20684 -14.76034 -14.72576 -14.29265 -13.89117 -13.65369 -13.29182 -13.11123 -12.56002 -12.44027 -12.39865 -12.07391 -11.93859 -11.81803 -11.60283 -11.33843 -11.17560 -10.92730 -10.89322 -10.59820 -10.21813 -10.15683 -10.08732 -9.72357 -9.29900 -9.21950 -8.83875 -8.58682 -6.93247 -6.22829 -4.31862 0.50500 0.82170 1.70961 1.72168 2.01810 2.70359 2.98963 3.24568 3.28372 3.29041 3.40555 3.47028 4.01881 4.30071 4.38176 4.40645 4.65955 4.72713 4.81034 4.91570 4.96940 5.12395 5.13367 5.32069 5.35983 5.38711 5.53185 5.71170 5.81441 5.94774 5.99444 6.16487 6.19096 6.35365 6.84580 7.07004 7.18029 7.63599 7.88863 8.68493 8.89958 9.31942 10.87406 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.028738 B = 0.002739 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.082539 B =10219.143581 C =11088.032139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 N -0.464 5.464 4 C 0.189 3.811 5 S -0.049 6.049 6 C 0.078 3.922 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.072 3.928 10 N -0.880 5.880 11 Si 0.908 3.092 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 N -0.286 5.286 16 N -0.261 5.261 17 C 0.186 3.814 18 C 0.018 3.982 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.107 4.107 22 C -0.031 4.031 23 Cl -0.068 7.068 24 C -0.118 4.118 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.269 0.731 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 -13.206 20.297 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 N -0.159 5.159 4 C -0.183 4.183 5 S 0.181 5.819 6 C -0.069 4.069 7 C -0.569 4.569 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.517 5.517 11 Si 0.734 3.266 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 N -0.131 5.131 16 N -0.103 5.103 17 C -0.080 4.080 18 C 0.015 3.985 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.058 4.058 23 Cl -0.039 7.039 24 C -0.139 4.139 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.147 -12.721 19.737 23.691 hybrid contribution -0.208 -0.291 -0.367 0.512 sum -3.355 -13.012 19.370 23.574 Atomic orbital electron populations 1.22257 0.93438 1.03733 1.04034 1.22121 0.96294 0.79122 1.05339 1.46541 1.50737 1.13447 1.05130 1.27529 1.03191 0.90578 0.96993 1.85469 1.82158 1.29187 0.85067 1.21363 1.01182 0.87275 0.97063 1.20530 1.47508 1.00237 0.88632 0.91510 1.24936 0.94353 0.94667 0.99432 1.69971 1.42448 1.03215 1.36034 0.86397 0.78874 0.77642 0.83640 1.19843 1.20903 1.19839 1.74902 1.19351 1.16920 1.01930 1.74264 1.16646 1.15436 1.03936 1.22595 1.06536 0.90232 0.88646 1.17335 0.97994 0.95510 0.87668 1.21383 0.97229 0.99124 0.91912 1.21101 0.98625 0.96214 0.96036 1.21185 0.96384 0.95647 0.99390 1.20683 0.98245 0.92755 0.94075 1.98380 1.70158 1.43332 1.92048 1.21448 0.99933 0.97270 0.95228 0.89847 0.91776 0.90379 0.87866 0.88292 0.92798 0.92814 0.92157 0.83824 0.84219 0.84608 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.62 37.16 0.36 -1.38 16 2 C 0.09 1.06 5.84 -4.04 -0.02 1.04 16 3 N -0.46 -7.49 2.83 -114.09 -0.32 -7.81 16 4 C 0.19 3.82 8.07 -88.18 -0.71 3.11 16 5 S -0.05 -1.00 21.82 -107.50 -2.35 -3.35 16 6 C 0.08 2.04 4.99 36.01 0.18 2.21 16 7 C -0.53 -14.38 9.13 -34.44 -0.31 -14.70 16 8 H 0.07 1.75 7.71 -52.49 -0.40 1.34 16 9 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 10 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 11 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 N -0.29 -6.50 11.59 30.71 0.36 -6.14 16 16 N -0.26 -5.28 12.02 32.59 0.39 -4.89 16 17 C 0.19 3.08 7.69 -153.75 -1.18 1.89 16 18 C 0.02 0.23 5.86 -104.98 -0.62 -0.39 16 19 C -0.08 -0.83 9.70 -39.18 -0.38 -1.21 16 20 C -0.10 -0.82 10.03 -39.64 -0.40 -1.22 16 21 C -0.11 -0.85 9.82 -39.46 -0.39 -1.24 16 22 C -0.03 -0.29 6.31 -39.56 -0.25 -0.54 16 23 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 24 C -0.12 -1.25 8.41 -39.15 -0.33 -1.58 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.64 7.02 -51.93 -0.36 0.27 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.12 7.99 -51.93 -0.42 0.71 16 29 H 0.10 0.91 5.76 -51.93 -0.30 0.61 16 30 H 0.05 1.51 8.14 -51.91 -0.42 1.09 16 31 H 0.05 1.50 8.14 -51.92 -0.42 1.08 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.14 1.59 7.98 -52.49 -0.42 1.17 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 1.38 3.44 -52.49 -0.18 1.20 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -31.50 339.16 -10.50 -42.00 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -3.75 Total: -1.66 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -4.15 Total: -12.11 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.16 Total: -43.67 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.35 Total: -3.35 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.50 -10.50 -42.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072527403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.128 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds