Wall clock time and date at job start Tue Mar 31 2020 13:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34774 * 117.00060 * 2 1 4 4 O 1.21530 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.47233 * 120.00278 * 179.72383 * 3 2 1 6 6 C 1.36505 * 127.19703 * 359.68513 * 5 3 2 7 7 O 1.33627 * 108.38053 * 179.87356 * 6 5 3 8 8 C 1.34224 * 110.92334 * 0.40796 * 7 6 5 9 9 C 1.50701 * 125.42407 * 179.73240 * 8 7 6 10 10 S 1.81002 * 109.46758 * 270.02171 * 9 8 7 11 11 C 1.76203 * 99.99874 * 180.02562 * 10 9 8 12 12 N 1.32387 * 126.25864 * 0.02990 * 11 10 9 13 13 N 1.28511 * 110.20029 * 179.97438 * 12 11 10 14 14 C 1.33100 * 109.75039 * 359.97438 * 13 12 11 15 15 C 1.39779 * 126.56512 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99780 * 180.02562 * 15 14 13 17 17 C 1.40079 * 119.99716 * 0.02562 * 15 14 13 18 18 N 1.30808 * 120.00310 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47223 * 89.99532 * 19 17 15 21 21 H 1.48491 * 109.47352 * 210.00100 * 19 17 15 22 22 H 1.48510 * 109.46846 * 330.00054 * 19 17 15 23 23 N 1.36672 * 126.25559 * 179.71141 * 11 10 9 24 24 C 1.46503 * 127.15521 * 0.03711 * 23 11 10 25 25 C 1.34157 * 109.14609 * 359.74947 * 8 7 6 26 26 H 1.08997 * 109.46967 * 299.99916 * 1 2 3 27 27 H 1.09002 * 109.46640 * 60.00119 * 1 2 3 28 28 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.07997 * 125.80852 * 359.97438 * 6 5 3 30 30 H 1.09002 * 109.47481 * 30.02217 * 9 8 7 31 31 H 1.08998 * 109.46872 * 150.02593 * 9 8 7 32 32 H 0.97007 * 120.00204 * 180.02562 * 18 17 15 33 33 H 1.09003 * 109.46481 * 90.02277 * 24 23 11 34 34 H 1.08992 * 109.47159 * 210.02413 * 24 23 11 35 35 H 1.09001 * 109.46981 * 330.02745 * 24 23 11 36 36 H 1.07997 * 127.02582 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2780 0.0061 6 6 4.4152 0.2354 0.0182 7 8 5.6558 0.7320 0.0173 8 6 5.6348 2.0741 0.0139 9 6 6.8491 2.9666 0.0177 10 16 7.3271 3.3275 1.7258 11 6 8.7284 4.3569 1.4403 12 7 9.2141 4.7086 0.2601 13 7 10.2415 5.4657 0.4108 14 6 10.4795 5.6481 1.7076 15 6 11.5103 6.4093 2.2660 16 1 11.6053 6.4848 3.3392 17 6 12.4199 7.0743 1.4337 18 7 12.3050 6.9824 0.1339 19 14 13.7978 8.0910 2.1800 20 1 14.9923 7.2325 2.3832 21 1 14.1410 9.2079 1.2637 22 1 13.3554 8.6408 3.4867 23 7 9.5089 4.9432 2.3969 24 6 9.3522 4.8436 3.8501 25 6 4.3607 2.4942 0.0070 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.1540 -0.8125 0.0254 30 1 7.6714 2.4637 -0.4912 31 1 6.6171 3.8978 -0.4991 32 1 12.9351 7.4426 -0.4424 33 1 9.9237 3.9921 4.2195 34 1 9.7177 5.7573 4.3184 35 1 8.2985 4.7070 4.0933 36 1 4.0132 3.5167 0.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279931285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:02 Heat of formation + Delta-G solvation = -19.218761 kcal Electronic energy + Delta-G solvation = -23098.210140 eV Core-core repulsion = 19290.235840 eV Total energy + Delta-G solvation = -3807.974300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.78592 -42.46581 -41.20791 -37.50040 -35.63197 -35.18639 -34.37841 -33.38878 -31.32477 -29.08810 -28.34847 -27.78467 -27.23958 -25.04251 -22.82372 -22.58465 -22.22206 -21.27724 -19.30872 -18.90907 -18.21679 -17.88107 -17.62139 -17.27868 -17.11670 -17.03129 -16.58198 -16.16240 -15.48540 -15.30532 -15.03004 -14.67706 -14.35083 -14.31345 -14.00810 -13.94371 -13.80964 -13.36643 -13.15266 -12.94898 -12.89073 -12.77190 -12.12939 -11.96099 -11.83556 -11.82493 -11.71851 -11.44952 -11.04753 -10.59475 -10.40460 -10.30040 -9.78936 -8.59295 -8.54616 -6.59114 -0.06443 0.14248 0.87407 1.18863 1.30378 1.42496 1.52292 1.58672 1.61589 1.73825 1.94931 2.18700 2.44006 2.50105 3.29976 3.33827 3.48999 3.81424 4.00523 4.07684 4.26558 4.34282 4.35365 4.38541 4.45378 4.56555 4.62200 4.74407 4.84385 4.87617 4.95339 5.05472 5.24604 5.31669 5.55566 5.81537 6.02144 6.21734 6.64317 6.75541 6.91215 8.40761 8.62658 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.040189 B = 0.002184 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.532435 B =12818.171915 C =12961.137666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.543 3.457 4 O -0.541 6.541 5 C -0.262 4.262 6 C 0.104 3.896 7 O -0.167 6.167 8 C -0.003 4.003 9 C -0.015 4.015 10 S 0.009 5.991 11 C 0.051 3.949 12 N -0.327 5.327 13 N -0.387 5.387 14 C 0.318 3.682 15 C -0.470 4.470 16 H 0.104 0.896 17 C 0.028 3.972 18 N -0.787 5.787 19 Si 1.007 2.993 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.248 1.248 23 N -0.521 5.521 24 C 0.093 3.907 25 C -0.134 4.134 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.139 0.861 29 H 0.271 0.729 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.285 0.715 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -14.409 4.218 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.390 3.610 4 O -0.433 6.433 5 C -0.265 4.265 6 C 0.032 3.968 7 O -0.062 6.062 8 C -0.053 4.053 9 C -0.163 4.163 10 S 0.238 5.762 11 C -0.322 4.322 12 N -0.172 5.172 13 N -0.234 5.234 14 C 0.071 3.929 15 C -0.510 4.510 16 H 0.122 0.878 17 C -0.193 4.193 18 N -0.412 5.412 19 Si 0.825 3.175 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.171 1.171 23 N -0.223 5.223 24 C -0.050 4.050 25 C -0.156 4.156 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.287 0.713 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.678 -14.473 3.515 22.360 hybrid contribution 0.712 1.226 0.152 1.426 sum -15.966 -13.247 3.667 21.067 Atomic orbital electron populations 1.23617 0.73967 1.06114 1.02605 1.86513 1.25417 1.30940 1.84074 1.20063 0.87573 0.81658 0.71677 1.90848 1.67230 1.37285 1.47913 1.20510 0.90652 0.94832 1.20478 1.25638 0.78526 1.00737 0.91890 1.83826 1.31427 1.20693 1.70245 1.20948 0.94549 0.80713 1.09051 1.21587 0.96460 1.00764 0.97470 1.84504 1.25030 1.57320 1.09345 1.26333 1.05094 1.11440 0.89374 1.74397 1.08606 1.13227 1.20936 1.75316 1.12708 1.21335 1.13992 1.22050 0.90379 0.92969 0.87460 1.18626 1.09035 1.27743 0.95590 0.87836 1.26988 1.00837 0.96733 0.94710 1.70149 1.32873 1.32520 1.05640 0.84852 0.76321 0.77202 0.79094 1.18570 1.19621 1.17077 1.46361 1.25359 1.42760 1.07771 1.21863 1.03421 1.03893 0.75828 1.22592 0.90246 0.99647 1.03141 0.91989 0.91987 0.84252 0.71313 0.87592 0.86247 0.90499 0.90684 0.89254 0.89146 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.35 -5.72 10.42 -56.86 -0.59 -6.31 16 3 C 0.54 12.24 7.95 70.19 0.56 12.80 16 4 O -0.54 -15.83 16.77 19.74 0.33 -15.50 16 5 C -0.26 -5.58 6.31 -19.00 -0.12 -5.70 16 6 C 0.10 1.58 11.94 67.41 0.80 2.38 16 7 O -0.17 -3.60 10.52 4.60 0.05 -3.55 16 8 C 0.00 -0.08 6.53 24.75 0.16 0.09 16 9 C -0.01 -0.45 5.74 71.24 0.41 -0.04 16 10 S 0.01 0.32 21.77 -56.49 -1.23 -0.91 16 11 C 0.05 2.43 8.09 179.18 1.45 3.88 16 12 N -0.33 -18.19 11.62 -56.17 -0.65 -18.85 16 13 N -0.39 -23.98 10.48 -55.02 -0.58 -24.56 16 14 C 0.32 18.03 7.53 133.23 1.00 19.04 16 15 C -0.47 -24.92 9.04 23.09 0.21 -24.72 16 16 H 0.10 4.85 7.31 -2.91 -0.02 4.83 16 17 C 0.03 1.44 5.50 85.29 0.47 1.91 16 18 N -0.79 -44.40 11.94 21.85 0.26 -44.14 16 19 Si 1.01 37.48 29.56 68.60 2.03 39.50 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 21 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 23 N -0.52 -24.91 3.26 -543.61 -1.77 -26.68 16 24 C 0.09 3.19 10.87 127.77 1.39 4.58 16 25 C -0.13 -3.31 10.90 23.65 0.26 -3.06 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.27 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 32 H 0.28 14.49 8.30 -92.70 -0.77 13.72 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 2.88 7.54 -2.39 -0.02 2.86 16 35 H 0.09 2.65 7.85 -2.39 -0.02 2.63 16 36 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -80.15 344.57 6.77 -73.38 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.13 Total: 14.93 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 7.79 Total: 12.68 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -2.74 Total: -114.22 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.21 Total: -25.36 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.23 Total: -0.91 kcal Total: -80.15 6.77 -73.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279931285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.163 kcal (2) G-P(sol) polarization free energy of solvation -80.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds