Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47148 * 2 1 4 4 C 1.50700 * 109.47336 * 120.00371 * 2 1 3 5 5 H 1.07997 * 120.00000 * 120.00229 * 4 2 1 6 6 C 1.37872 * 119.99708 * 299.99724 * 4 2 1 7 7 N 1.31512 * 120.00621 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46830 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47203 * 120.00049 * 8 6 4 11 11 H 1.48499 * 109.47172 * 240.00326 * 8 6 4 12 12 N 1.46506 * 109.46849 * 240.00475 * 2 1 3 13 13 C 1.34777 * 119.99908 * 84.99741 * 12 2 1 14 14 O 1.21569 * 120.00128 * 0.02562 * 13 12 2 15 15 C 1.47695 * 119.99680 * 179.97438 * 13 12 2 16 16 C 1.39657 * 120.15736 * 359.97438 * 15 13 12 17 17 C 1.38064 * 119.85555 * 180.02562 * 16 15 13 18 18 F 1.35095 * 119.92139 * 180.02562 * 17 16 15 19 19 C 1.38657 * 120.16342 * 0.02562 * 17 16 15 20 20 C 1.50697 * 119.84317 * 179.97438 * 19 17 16 21 21 F 1.39903 * 109.47222 * 180.02562 * 20 19 17 22 22 F 1.39899 * 109.47280 * 300.02123 * 20 19 17 23 23 F 1.39900 * 109.47269 * 60.02241 * 20 19 17 24 24 C 1.38195 * 120.31723 * 0.02562 * 19 17 16 25 25 C 1.38314 * 120.14223 * 359.97438 * 24 19 17 26 26 F 1.35097 * 120.08191 * 180.02562 * 25 24 19 27 27 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46811 * 299.99121 * 1 2 3 29 29 H 1.08994 * 109.47722 * 59.99566 * 1 2 3 30 30 H 0.96995 * 120.00171 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99562 * 264.99100 * 12 2 1 32 32 H 1.08006 * 120.07185 * 0.04801 * 16 15 13 33 33 H 1.07998 * 119.92805 * 179.69819 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3227 -1.1197 4.0079 9 1 3.1486 -2.2858 3.6035 10 1 3.1474 -0.1860 4.8159 11 1 1.1680 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8582 1.1616 -2.4116 15 6 2.6397 -0.7142 -3.5630 16 6 2.9738 -2.0689 -3.5038 17 6 3.4344 -2.7132 -4.6347 18 9 3.7575 -4.0238 -4.5791 19 6 3.5661 -2.0186 -5.8275 20 6 4.0701 -2.7289 -7.0573 21 9 4.1180 -1.8301 -8.1283 22 9 5.3525 -3.2317 -6.8128 23 9 3.2076 -3.7844 -7.3725 24 6 3.2385 -0.6777 -5.8936 25 6 2.7759 -0.0194 -4.7686 26 9 2.4555 1.2914 -4.8348 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.7083 1.1606 3.4845 31 1 2.2491 -1.6317 -1.1527 32 1 2.8718 -2.6114 -2.5755 33 1 3.3482 -0.1415 -6.8247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341277856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -248.425996 kcal Electronic energy + Delta-G solvation = -27063.163268 eV Core-core repulsion = 22117.259919 eV Total energy + Delta-G solvation = -4945.903349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.60170 -49.46151 -49.05512 -48.04356 -47.98931 -39.98791 -38.34941 -35.03138 -33.17775 -32.21581 -30.68724 -29.12230 -26.89673 -25.36601 -23.74969 -23.30264 -21.45447 -19.91271 -19.28803 -18.93995 -18.88914 -18.34963 -17.35395 -17.20083 -16.33423 -16.22314 -15.66979 -15.54782 -15.28549 -15.05992 -14.84083 -14.69318 -14.53055 -14.42279 -14.29080 -14.14441 -14.10590 -14.00866 -13.15995 -13.06356 -12.86455 -12.53663 -12.38152 -11.91881 -11.82322 -11.19506 -11.06613 -10.88580 -10.41442 -10.33965 -9.92414 -9.49158 -9.17335 -9.09203 -8.67619 -8.15535 -6.22264 -4.32640 -0.11521 0.43891 2.10609 2.35945 3.12817 3.18328 3.26168 3.28323 3.33422 3.46923 3.55308 3.64734 3.81163 3.95836 4.13958 4.26442 4.44057 4.75281 4.88469 5.10780 5.14019 5.21718 5.40327 5.57745 6.09513 6.69542 6.81364 7.00032 7.20383 7.36348 7.55909 7.76362 8.01712 8.37498 8.58805 8.81495 9.35031 10.83739 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.003204 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.369491 B = 8737.142663 C = 9659.826830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.693 5.693 13 C 0.537 3.463 14 O -0.524 6.524 15 C -0.095 4.095 16 C -0.097 4.097 17 C 0.135 3.865 18 F -0.117 7.117 19 C -0.184 4.184 20 C 0.517 3.483 21 F -0.171 7.171 22 F -0.168 7.168 23 F -0.168 7.168 24 C -0.090 4.090 25 C 0.147 3.853 26 F -0.099 7.099 27 H 0.028 0.972 28 H 0.093 0.907 29 H 0.016 0.984 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.165 0.835 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 -7.771 -17.746 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.341 5.341 13 C 0.320 3.680 14 O -0.402 6.402 15 C -0.100 4.100 16 C -0.116 4.116 17 C 0.115 3.885 18 F -0.095 7.095 19 C -0.187 4.187 20 C 0.462 3.538 21 F -0.152 7.152 22 F -0.150 7.150 23 F -0.150 7.150 24 C -0.109 4.109 25 C 0.126 3.874 26 F -0.077 7.077 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.182 0.818 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.913 -6.806 -17.605 19.504 hybrid contribution 0.498 -1.094 0.652 1.367 sum 5.411 -7.899 -16.953 19.470 Atomic orbital electron populations 1.22095 0.98007 0.99386 1.01217 1.18901 0.91315 0.94155 0.79402 0.92868 1.21202 1.32832 1.13448 0.90134 0.91870 1.24880 0.94671 0.94902 0.99120 1.69899 1.35589 1.22347 1.24007 0.86367 0.78652 0.79522 0.82414 1.19674 1.20795 1.20789 1.46561 1.63746 1.13604 1.10154 1.17782 0.80246 0.87002 0.82973 1.90846 1.50200 1.14729 1.84437 1.20681 1.00326 0.93716 0.95270 1.21305 0.98168 0.93574 0.98587 1.17003 0.99464 0.78945 0.93063 1.91609 1.89808 1.31231 1.96853 1.19920 1.09898 0.95792 0.93101 1.17864 0.75899 0.77118 0.82873 1.93195 1.96255 1.67462 1.58285 1.93261 1.39568 1.87892 1.94236 1.93259 1.69805 1.58301 1.93606 1.20797 0.98120 0.92402 0.99606 1.17412 0.97876 0.79674 0.92450 1.91667 1.89170 1.30310 1.96524 0.95247 0.88839 0.96464 0.92458 0.77685 0.81751 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16 2 C 0.26 6.34 2.56 -69.08 -0.18 6.16 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.69 -13.32 5.02 -55.92 -0.28 -13.60 16 13 C 0.54 10.10 7.73 -12.40 -0.10 10.01 16 14 O -0.52 -11.97 15.00 5.31 0.08 -11.89 16 15 C -0.10 -1.35 5.88 -104.92 -0.62 -1.96 16 16 C -0.10 -1.09 9.51 -39.12 -0.37 -1.46 16 17 C 0.14 1.46 7.11 -39.49 -0.28 1.17 16 18 F -0.12 -1.28 16.43 2.25 0.04 -1.25 16 19 C -0.18 -1.88 5.38 -104.48 -0.56 -2.45 16 20 C 0.52 5.09 3.02 36.00 0.11 5.20 16 21 F -0.17 -1.56 15.95 2.25 0.04 -1.53 16 22 F -0.17 -1.76 17.04 2.25 0.04 -1.72 16 23 F -0.17 -1.75 17.04 2.25 0.04 -1.72 16 24 C -0.09 -0.91 9.39 -39.57 -0.37 -1.28 16 25 C 0.15 1.93 7.28 -38.97 -0.28 1.64 16 26 F -0.10 -1.52 15.55 2.25 0.04 -1.49 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 31 H 0.39 6.20 6.57 -40.82 -0.27 5.93 16 32 H 0.17 1.56 6.41 -52.48 -0.34 1.23 16 33 H 0.17 1.26 7.14 -52.49 -0.37 0.88 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -28.85 311.47 -4.49 -33.34 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.07 Total: 1.92 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.70 Total: 1.70 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.35 Total: -36.93 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.18 Total: -7.70 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.85 -4.49 -33.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341277856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.083 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds