Wall clock time and date at job start Tue Mar 31 2020 14:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48504 * 109.47366 * 270.00167 * 3 2 1 5 5 H 1.48510 * 109.47246 * 29.99683 * 3 2 1 6 6 H 1.48499 * 109.47357 * 149.99723 * 3 2 1 7 7 C 1.39908 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99915 * 175.58842 * 7 2 1 9 9 C 1.41140 * 119.99996 * 355.58988 * 7 2 1 10 10 C 1.40874 * 120.16176 * 214.77541 * 9 7 2 11 11 C 1.36353 * 119.83324 * 180.02562 * 10 9 7 12 12 C 1.39514 * 120.16344 * 0.02562 * 11 10 9 13 13 N 1.39126 * 119.83583 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00295 * 35.31503 * 13 12 11 15 15 O 1.21593 * 119.99954 * 355.71476 * 14 13 12 16 16 C 1.47580 * 120.00149 * 175.71912 * 14 13 12 17 17 C 1.40263 * 119.95062 * 0.02562 * 16 14 13 18 18 C 1.36010 * 120.18992 * 179.97438 * 17 16 14 19 19 C 1.40115 * 120.66648 * 0.02562 * 18 17 16 20 20 S 1.75968 * 130.36845 * 180.02562 * 19 18 17 21 21 C 1.75274 * 92.23227 * 179.76331 * 20 19 18 22 22 C 1.31740 * 111.46412 * 0.34325 * 21 20 19 23 23 C 1.39967 * 120.03541 * 359.97098 * 19 18 17 24 24 C 1.38676 * 119.94972 * 180.02562 * 16 14 13 25 25 C 1.39506 * 120.33147 * 0.23170 * 12 11 10 26 26 C 1.36370 * 120.16201 * 359.48284 * 25 12 11 27 27 H 0.96997 * 119.99923 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.08284 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.91908 * 179.97438 * 11 10 9 30 30 H 0.97000 * 120.00083 * 215.32128 * 13 12 11 31 31 H 1.08002 * 119.90133 * 0.02644 * 17 16 14 32 32 H 1.07996 * 119.66467 * 180.02562 * 18 17 16 33 33 H 1.07991 * 124.27007 * 180.20344 * 21 20 19 34 34 H 1.08002 * 122.55119 * 179.85802 * 22 21 20 35 35 H 1.07993 * 119.96078 * 359.97181 * 24 16 14 36 36 H 1.07995 * 119.92098 * 179.73012 * 25 12 11 37 37 H 1.08005 * 120.08353 * 180.22928 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4401 2.6528 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2129 -0.0714 9 6 1.3058 -2.4321 0.0951 10 6 1.8650 -3.5181 0.7969 11 6 1.1807 -4.6943 0.8836 12 6 -0.0699 -4.8239 0.2789 13 7 -0.7620 -6.0274 0.3712 14 6 -0.6811 -6.7669 1.4951 15 8 0.0572 -6.4223 2.3977 16 6 -1.4884 -7.9948 1.6302 17 6 -2.3392 -8.3917 0.5880 18 6 -3.0851 -9.5228 0.7071 19 6 -3.0161 -10.3054 1.8673 20 16 -3.8535 -11.7945 2.2890 21 6 -3.0590 -11.8802 3.8490 22 6 -2.2404 -10.8639 4.0295 23 6 -2.1733 -9.9269 2.9187 24 6 -1.4048 -8.7546 2.7872 25 6 -0.6277 -3.7547 -0.4223 26 6 0.0424 -2.5704 -0.5125 27 1 -0.4850 0.8400 -0.0004 28 1 2.8335 -3.4195 1.2644 29 1 1.6082 -5.5279 1.4209 30 1 -1.3026 -6.3343 -0.3734 31 1 -2.4016 -7.7978 -0.3119 32 1 -3.7370 -9.8206 -0.1007 33 1 -3.2217 -12.6657 4.5720 34 1 -1.6600 -10.7383 4.9316 35 1 -0.7486 -8.4472 3.5880 36 1 -1.5943 -3.8637 -0.8915 37 1 -0.3923 -1.7422 -1.0526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386157253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:06 Heat of formation + Delta-G solvation = 34.702818 kcal Electronic energy + Delta-G solvation = -22478.459097 eV Core-core repulsion = 19083.672276 eV Total energy + Delta-G solvation = -3394.786821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.072 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36428 -39.02454 -37.23061 -35.39317 -34.51202 -32.95149 -31.29393 -29.96916 -29.53965 -28.67900 -25.46829 -24.23442 -23.08489 -21.97752 -21.28761 -20.61059 -19.44169 -18.49550 -17.38200 -17.11351 -16.61390 -15.67507 -15.46178 -15.14207 -14.75568 -14.65314 -13.98621 -13.95843 -13.86295 -13.79440 -13.02473 -12.99483 -12.62357 -12.42707 -12.13866 -11.73545 -11.51087 -11.44472 -11.36452 -11.15966 -11.03062 -10.99294 -10.73811 -10.07307 -9.91186 -9.52974 -9.47170 -9.18841 -8.91242 -8.85962 -8.02583 -7.56339 -6.87897 -6.63250 -4.35443 0.39326 0.70017 1.19807 1.65672 1.95395 2.57947 2.97459 3.07650 3.09463 3.13038 3.23127 3.57347 3.84651 3.97385 4.28740 4.47851 4.68578 4.76973 4.84969 5.02333 5.08529 5.34287 5.42899 5.60410 5.64789 5.73773 5.97060 6.03812 6.13845 6.18848 6.43430 6.48633 6.72502 6.90710 7.05393 7.18566 7.28123 7.62476 7.71897 7.84559 8.04845 8.22384 8.30006 8.59823 8.69546 8.91311 8.98157 10.27701 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.041579 B = 0.002168 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.263217 B =12912.700032 C =13249.856012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.642 5.642 14 C 0.541 3.459 15 O -0.527 6.527 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.090 4.090 19 C -0.123 4.123 20 S 0.082 5.918 21 C -0.196 4.196 22 C -0.108 4.108 23 C -0.088 4.088 24 C -0.016 4.016 25 C -0.119 4.119 26 C -0.142 4.142 27 H 0.278 0.722 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.395 0.605 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -19.554 1.976 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.091 4.091 13 N -0.285 5.285 14 C 0.329 3.671 15 O -0.405 6.405 16 C -0.127 4.127 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.239 4.239 20 S 0.345 5.655 21 C -0.330 4.330 22 C -0.138 4.138 23 C -0.096 4.096 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.162 4.162 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.230 0.770 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.381 -20.120 1.973 22.287 hybrid contribution 0.900 1.454 0.481 1.777 sum -8.481 -18.665 2.455 20.648 Atomic orbital electron populations 1.69759 1.07293 1.28750 1.37995 1.25892 0.94956 1.01208 0.92561 0.86190 0.80251 0.80449 0.79046 1.19517 1.20296 1.18708 1.19505 0.94759 0.90204 1.44539 0.90566 1.17740 0.92286 0.92017 0.88170 1.20809 1.01268 0.94932 1.05558 1.20407 0.92717 0.97875 0.99338 1.17245 0.94305 0.85686 1.11897 1.42868 1.48491 1.21231 1.15868 1.18089 0.82885 0.83524 0.82620 1.90773 1.39030 1.70669 1.39997 1.19893 1.00134 0.96934 0.95779 1.20944 0.94565 0.95822 0.98166 1.20091 1.00684 0.94620 0.95839 1.22935 1.01970 1.00113 0.98857 1.84138 1.46904 1.21587 1.12856 1.25010 1.03126 1.03740 1.01091 1.20991 1.00301 0.93611 0.98909 1.19272 0.99371 0.97052 0.93876 1.21137 0.95190 0.90507 0.96805 1.20316 0.98341 0.93108 1.02143 1.21195 0.97300 0.95544 1.02130 0.91112 0.88523 0.87407 0.77028 0.84687 0.85004 0.81384 0.83335 0.83870 0.89029 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.02 10.60 55.55 0.59 -20.43 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.21 9.02 -37.86 -0.34 -12.55 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.20 9.74 -39.26 -0.38 -5.59 16 11 C -0.08 -2.00 8.61 -39.78 -0.34 -2.34 16 12 C 0.00 0.02 6.30 -83.60 -0.53 -0.51 16 13 N -0.64 -11.30 5.25 -10.67 -0.06 -11.35 16 14 C 0.54 9.69 7.59 -12.45 -0.09 9.59 16 15 O -0.53 -11.42 13.72 5.28 0.07 -11.35 16 16 C -0.12 -1.70 5.86 -105.16 -0.62 -2.32 16 17 C -0.07 -0.81 9.46 -39.62 -0.37 -1.18 16 18 C -0.09 -0.90 9.99 -39.68 -0.40 -1.30 16 19 C -0.12 -1.34 6.49 -38.23 -0.25 -1.58 16 20 S 0.08 0.71 23.23 -107.50 -2.50 -1.79 16 21 C -0.20 -1.56 11.01 28.85 0.32 -1.24 16 22 C -0.11 -1.00 10.39 -38.58 -0.40 -1.40 16 23 C -0.09 -1.02 6.03 -105.40 -0.64 -1.65 16 24 C -0.02 -0.21 9.65 -38.46 -0.37 -0.58 16 25 C -0.12 -2.69 9.90 -39.78 -0.39 -3.08 16 26 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 30 H 0.39 5.37 6.83 -40.82 -0.28 5.09 16 31 H 0.14 1.16 6.39 -52.49 -0.34 0.82 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.89 7.61 -52.49 -0.40 1.50 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.13 3.48 6.13 -52.48 -0.32 3.15 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.73 332.93 -11.05 -41.78 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -3.32 Total: 10.14 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -5.83 Total: -25.95 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.53 Total: -31.78 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.50 Total: -1.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.73 -11.05 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386157253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.486 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds