Wall clock time and date at job start Tue Mar 31 2020 13:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46816 * 2 1 4 4 C 1.36932 * 120.00173 * 94.19833 * 3 2 1 5 5 H 1.08004 * 120.00068 * 218.00683 * 4 3 2 6 6 C 1.38808 * 119.99995 * 37.72192 * 4 3 2 7 7 N 1.31616 * 120.00381 * 213.80046 * 6 4 3 8 8 Si 1.86804 * 119.99919 * 33.80505 * 6 4 3 9 9 H 1.48499 * 109.47557 * 93.02156 * 8 6 4 10 10 H 1.48499 * 109.46876 * 213.02558 * 8 6 4 11 11 H 1.48503 * 109.46974 * 333.02049 * 8 6 4 12 12 C 1.46506 * 120.00086 * 274.19105 * 3 2 1 13 13 H 1.08998 * 109.24762 * 0.02562 * 12 3 2 14 14 C 1.52731 * 109.25458 * 240.53421 * 12 3 2 15 15 C 1.53333 * 108.36766 * 188.63910 * 14 12 3 16 16 C 1.52729 * 108.37583 * 69.92912 * 15 14 12 17 17 C 1.50641 * 110.58836 * 308.93564 * 16 15 14 18 18 C 1.38926 * 117.73848 * 197.46984 * 17 16 15 19 19 C 1.37910 * 120.56032 * 180.19546 * 18 17 16 20 20 C 1.38351 * 119.76068 * 0.04230 * 19 18 17 21 21 Br 1.89105 * 120.12316 * 179.91697 * 20 19 18 22 22 C 1.38017 * 119.75190 * 359.89696 * 20 19 18 23 23 C 1.37612 * 122.54905 * 17.57087 * 17 16 15 24 24 H 1.09008 * 109.47269 * 306.51021 * 1 2 3 25 25 H 1.09003 * 109.47590 * 66.50655 * 1 2 3 26 26 H 1.08998 * 109.47081 * 186.51368 * 1 2 3 27 27 H 1.08997 * 109.47060 * 240.00324 * 2 1 3 28 28 H 1.08999 * 109.47273 * 119.99881 * 2 1 3 29 29 H 0.97003 * 120.00315 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.68762 * 308.36024 * 14 12 3 31 31 H 1.09001 * 109.68608 * 68.92268 * 14 12 3 32 32 H 1.09002 * 109.68152 * 189.64837 * 15 14 12 33 33 H 1.09002 * 109.68404 * 310.16748 * 15 14 12 34 34 H 1.09001 * 109.25306 * 69.21892 * 16 15 14 35 35 H 1.09001 * 109.25752 * 188.64839 * 16 15 14 36 36 H 1.08001 * 119.71772 * 0.21873 * 18 17 16 37 37 H 1.08000 * 120.11726 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.73172 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3283 1.9979 1.1827 5 1 2.0963 3.0432 1.3237 6 6 2.9354 1.2780 2.2024 7 7 2.6615 1.5579 3.4590 8 14 4.1413 -0.0882 1.7914 9 1 5.5222 0.4576 1.7785 10 1 4.0422 -1.1602 2.8143 11 1 3.8179 -0.6482 0.4546 12 6 2.1750 2.1028 -1.2654 13 1 1.8805 1.4523 -2.0888 14 6 3.6384 2.5041 -1.4384 15 6 3.7433 3.4384 -2.6497 16 6 3.0866 4.7694 -2.2894 17 6 1.7065 4.5447 -1.7289 18 6 0.8373 5.6280 -1.6968 19 6 -0.4385 5.4886 -1.1922 20 6 -0.8570 4.2601 -0.7128 21 35 -2.6035 4.0580 -0.0164 22 6 0.0048 3.1825 -0.7452 23 6 1.2900 3.3217 -1.2550 24 1 -0.3634 0.6115 0.8260 25 1 -0.3634 0.4097 -0.9425 26 1 -0.3633 -1.0210 0.1166 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0861 1.0551 4.1716 30 1 3.9854 3.0218 -0.5443 31 1 4.2456 1.6147 -1.6072 32 1 4.7921 3.6017 -2.8977 33 1 3.2295 2.9937 -3.5020 34 1 3.6973 5.2819 -1.5461 35 1 3.0149 5.3886 -3.1836 36 1 1.1635 6.5873 -2.0706 37 1 -1.1084 6.3354 -1.1710 38 1 -0.3224 2.2236 -0.3713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411210388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:51 Heat of formation + Delta-G solvation = 40.427027 kcal Electronic energy + Delta-G solvation = -20419.099331 eV Core-core repulsion = 17500.780418 eV Total energy + Delta-G solvation = -2918.318913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 323.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78296 -36.55729 -35.08274 -32.06490 -31.49411 -30.97855 -29.54241 -28.74163 -27.18757 -24.18421 -22.81767 -22.21321 -22.05943 -20.26278 -18.80027 -16.62662 -16.00421 -15.31420 -15.03866 -14.91563 -14.41046 -13.82884 -13.52409 -13.19786 -13.07101 -12.81114 -12.57685 -12.24658 -12.02816 -11.87015 -11.67728 -11.52751 -11.17188 -10.82218 -10.63307 -10.52205 -10.30722 -10.17665 -10.12681 -9.97943 -9.84302 -9.76140 -9.41907 -8.56635 -8.21365 -8.00764 -6.83716 -6.05998 -3.35634 1.56187 1.79279 2.04246 3.36457 3.49166 3.52913 4.02751 4.55607 4.86273 5.03647 5.10215 5.24803 5.33440 5.43493 5.50367 5.61747 5.68006 5.93524 5.94425 6.01069 6.02523 6.16966 6.18359 6.21765 6.31232 6.35787 6.37319 6.47113 6.54883 6.59536 6.70715 6.86784 6.92802 7.01721 7.08384 7.14438 7.35964 8.03437 8.42460 9.00660 9.73278 10.14867 11.09479 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.006365 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.543614 B = 4397.668235 C = 5639.842222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 N -0.595 5.595 4 C -0.268 4.268 5 H 0.074 0.926 6 C 0.049 3.951 7 N -0.878 5.878 8 Si 0.845 3.155 9 H -0.291 1.291 10 H -0.297 1.297 11 H -0.262 1.262 12 C 0.209 3.791 13 H 0.064 0.936 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.077 4.077 17 C -0.064 4.064 18 C -0.128 4.128 19 C -0.104 4.104 20 C -0.099 4.099 21 Br -0.071 7.071 22 C -0.062 4.062 23 C -0.057 4.057 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 5.157 -12.059 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.019 3.981 3 N -0.316 5.316 4 C -0.396 4.396 5 H 0.092 0.908 6 C -0.153 4.153 7 N -0.517 5.517 8 Si 0.672 3.328 9 H -0.219 1.219 10 H -0.224 1.224 11 H -0.186 1.186 12 C 0.102 3.898 13 H 0.082 0.918 14 C -0.166 4.166 15 C -0.156 4.156 16 C -0.114 4.114 17 C -0.065 4.065 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.178 4.178 21 Br 0.014 6.986 22 C -0.082 4.082 23 C -0.060 4.060 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.378 5.025 -11.579 14.142 hybrid contribution 1.092 -0.602 0.013 1.247 sum -5.286 4.423 -11.566 13.464 Atomic orbital electron populations 1.22468 0.99570 1.00003 1.01140 1.21148 0.91791 0.86122 0.99034 1.44259 1.74575 1.11100 1.01653 1.18488 1.35288 0.97171 0.88673 0.90798 1.25441 0.97955 0.97138 0.94750 1.70073 1.40540 1.41989 0.99118 0.87383 0.83999 0.82709 0.78682 1.21901 1.22375 1.18613 1.19241 0.91583 0.89680 0.89344 0.91770 1.21957 0.97832 0.98845 0.97947 1.21570 0.99829 0.95486 0.98715 1.20449 0.92766 0.98175 0.99999 1.19732 0.95637 0.92793 0.98314 1.20984 0.93416 0.98362 1.01899 1.20817 0.96576 0.95605 0.99362 1.21629 0.92127 0.97321 1.06706 1.96601 1.18012 1.98258 1.85756 1.21548 0.92448 0.98806 0.95382 1.20411 0.94209 0.95657 0.95702 0.91774 0.93980 0.94046 0.94839 0.92561 0.92804 0.90099 0.92397 0.92054 0.92266 0.90596 0.91464 0.86173 0.86047 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 8.70 37.16 0.32 -2.84 16 2 C 0.14 2.98 4.62 -4.04 -0.02 2.96 16 3 N -0.59 -13.06 1.29 -167.18 -0.22 -13.28 16 4 C -0.27 -7.01 8.16 -15.06 -0.12 -7.14 16 5 H 0.07 2.17 7.74 -52.48 -0.41 1.77 16 6 C 0.05 1.36 5.00 -17.43 -0.09 1.27 16 7 N -0.88 -25.97 13.97 55.49 0.78 -25.19 16 8 Si 0.85 20.79 26.37 -169.99 -4.48 16.31 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.26 -6.06 5.90 56.52 0.33 -5.73 16 12 C 0.21 3.91 2.63 -69.25 -0.18 3.73 16 13 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 14 C -0.13 -2.21 5.35 -26.70 -0.14 -2.36 16 15 C -0.12 -1.60 5.98 -26.70 -0.16 -1.76 16 16 C -0.08 -1.04 5.67 -28.05 -0.16 -1.20 16 17 C -0.06 -1.03 5.74 -104.62 -0.60 -1.63 16 18 C -0.13 -1.89 9.61 -39.45 -0.38 -2.26 16 19 C -0.10 -1.60 9.80 -39.66 -0.39 -1.99 16 20 C -0.10 -1.71 6.22 -39.62 -0.25 -1.95 16 21 Br -0.07 -1.12 33.71 -68.01 -2.29 -3.41 16 22 C -0.06 -1.17 8.73 -39.39 -0.34 -1.52 16 23 C -0.06 -1.04 4.81 -104.62 -0.50 -1.54 16 24 H 0.06 1.32 7.58 -51.92 -0.39 0.92 16 25 H 0.04 0.71 7.23 -51.93 -0.38 0.33 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 28 H 0.06 1.27 4.63 -51.93 -0.24 1.03 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 1.63 7.36 -51.93 -0.38 1.25 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.12 1.43 8.05 -52.49 -0.42 1.00 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.15 2.87 4.08 -52.49 -0.21 2.66 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -28.37 314.13 -9.91 -38.28 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.42 Total: 0.79 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.01 Total: -18.23 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.56 Total: -38.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.48 Total: 16.31 kcal Atomic # 35 Polarization: -1.12 SS G_CDS: -2.29 Total: -3.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.37 -9.91 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411210388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.710 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds