Wall clock time and date at job start Tue Mar 31 2020 14:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47152 * 300.00192 * 3 2 1 6 6 H 1.48502 * 109.47009 * 60.00104 * 3 2 1 7 7 C 1.39866 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99718 * 197.97539 * 7 2 1 9 9 C 1.41130 * 119.99839 * 17.97203 * 7 2 1 10 10 C 1.40902 * 120.14706 * 204.59338 * 9 7 2 11 11 C 1.36353 * 119.85230 * 179.74113 * 10 9 7 12 12 C 1.39548 * 120.16778 * 0.54181 * 11 10 9 13 13 N 1.38902 * 119.84240 * 179.75950 * 12 11 10 14 14 C 1.46505 * 120.00198 * 359.72381 * 13 12 11 15 15 C 1.50699 * 109.47002 * 180.02562 * 14 13 12 16 16 O 1.21227 * 120.00047 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99464 * 179.97438 * 15 14 13 18 18 C 1.47059 * 125.40561 * 180.02562 * 17 15 14 19 19 C 1.54107 * 103.98975 * 179.97438 * 18 17 15 20 20 N 1.47389 * 103.70146 * 0.11097 * 19 18 17 21 21 C 1.33942 * 125.41460 * 359.97438 * 17 15 14 22 22 O 1.21540 * 123.04443 * 0.02651 * 21 17 15 23 23 C 1.39664 * 120.30949 * 359.48190 * 12 11 10 24 24 Cl 1.73592 * 119.92898 * 180.25363 * 23 12 11 25 25 C 1.36432 * 120.13802 * 0.23097 * 23 12 11 26 26 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.07526 * 0.03179 * 10 9 7 28 28 H 1.07997 * 119.91347 * 180.30354 * 11 10 9 29 29 H 0.96999 * 119.99889 * 179.72784 * 13 12 11 30 30 H 1.09001 * 109.46932 * 59.99732 * 14 13 12 31 31 H 1.09002 * 109.47141 * 300.00416 * 14 13 12 32 32 H 1.08996 * 110.54789 * 298.59367 * 18 17 15 33 33 H 1.09000 * 110.55202 * 61.25868 * 18 17 15 34 34 H 1.09003 * 110.54629 * 118.66593 * 19 18 17 35 35 H 1.08993 * 110.54736 * 241.47939 * 19 18 17 36 36 H 0.96991 * 125.37923 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.08615 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3464 -0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0488 -1.2341 0.2881 9 6 1.3544 -2.4035 -0.3782 10 6 1.8270 -3.6473 0.0854 11 6 1.1874 -4.7950 -0.2789 12 6 0.0737 -4.7411 -1.1182 13 7 -0.5697 -5.9149 -1.4891 14 6 -0.0753 -7.2060 -1.0043 15 6 -0.9423 -8.3122 -1.5482 16 8 -1.8800 -8.0482 -2.2697 17 7 -0.6744 -9.5949 -1.2332 18 6 -1.4385 -10.7632 -1.6957 19 6 -0.7147 -11.9610 -1.0503 20 7 0.3818 -11.3370 -0.2884 21 6 0.3305 -10.0083 -0.4500 22 8 1.1225 -9.2465 0.0693 23 6 -0.4003 -3.5121 -1.5822 24 17 -1.7904 -3.4560 -2.6204 25 6 0.2266 -2.3554 -1.2208 26 1 -0.4850 0.8400 0.0004 27 1 2.6912 -3.6911 0.7317 28 1 1.5458 -5.7485 0.0798 29 1 -1.3463 -5.8798 -2.0691 30 1 -0.1069 -7.2213 0.0851 31 1 0.9515 -7.3511 -1.3400 32 1 -2.4700 -10.7078 -1.3480 33 1 -1.4057 -10.8360 -2.7827 34 1 -1.3872 -12.4999 -0.3828 35 1 -0.3196 -12.6275 -1.8168 36 1 1.0383 -11.8135 0.2434 37 1 -0.1409 -1.4055 -1.5798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453137219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:16 Heat of formation + Delta-G solvation = -47.203531 kcal Electronic energy + Delta-G solvation = -24120.606536 eV Core-core repulsion = 20309.375019 eV Total energy + Delta-G solvation = -3811.231517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.99845 -40.45693 -39.71607 -37.83082 -37.13043 -36.59922 -35.05294 -34.72068 -31.48884 -30.96714 -30.21090 -28.63416 -26.16589 -24.84976 -24.00681 -22.98339 -22.15915 -20.65103 -19.32170 -19.07814 -18.43177 -18.29457 -17.52613 -17.16019 -16.82566 -16.24896 -16.02696 -15.82705 -15.59661 -15.09838 -14.97428 -14.75674 -14.63126 -14.58435 -14.05974 -13.83083 -13.50468 -13.30798 -13.27929 -12.86909 -12.79553 -12.52894 -12.14437 -11.92647 -11.71810 -11.57127 -11.49863 -11.39062 -11.16001 -10.99853 -10.48481 -10.10312 -9.36122 -8.61107 -8.31254 -6.09045 0.60247 0.87872 1.03988 1.04391 1.42718 1.51952 1.55258 1.57739 1.96788 2.26842 2.46614 2.74340 2.79766 3.21930 3.44491 3.69467 3.91512 4.03665 4.26229 4.32001 4.42912 4.52890 4.67508 4.71060 4.84812 5.02226 5.08562 5.28210 5.33937 5.42817 5.52313 5.71149 5.74329 5.95251 6.01626 6.23772 6.45988 6.51406 6.65474 6.90885 7.00523 7.06881 7.17202 8.43280 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002919 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.327146 B = 9591.660407 C =10630.761923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.185 4.185 11 C -0.147 4.147 12 C 0.109 3.891 13 N -0.750 5.750 14 C 0.134 3.866 15 C 0.551 3.449 16 O -0.518 6.518 17 N -0.582 5.582 18 C 0.068 3.932 19 C 0.099 3.901 20 N -0.711 5.711 21 C 0.688 3.312 22 O -0.588 6.588 23 C -0.075 4.075 24 Cl -0.102 7.102 25 C -0.138 4.138 26 H 0.285 0.715 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.447 0.553 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -24.574 -2.172 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.049 3.951 10 C -0.206 4.206 11 C -0.170 4.170 12 C 0.010 3.990 13 N -0.390 5.390 14 C 0.006 3.994 15 C 0.341 3.659 16 O -0.391 6.391 17 N -0.329 5.329 18 C -0.052 4.052 19 C -0.024 4.024 20 N -0.374 5.374 21 C 0.388 3.612 22 O -0.465 6.465 23 C -0.105 4.105 24 Cl -0.074 7.074 25 C -0.159 4.159 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.292 0.708 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.738 -23.904 -2.335 24.173 hybrid contribution -0.041 0.783 -0.037 0.785 sum -2.779 -23.121 -2.372 23.408 Atomic orbital electron populations 1.69912 1.08881 1.30153 1.37100 1.26684 0.95424 1.04356 0.91623 0.85208 0.79532 0.76613 0.78625 1.18056 1.19341 1.19333 1.19629 0.98360 0.92166 1.42343 0.90366 1.17718 0.92429 0.93492 0.91420 1.20882 1.03068 0.92223 1.04387 1.20138 0.96596 0.98504 1.01715 1.17060 0.96176 0.84308 1.01497 1.43827 1.35527 1.01485 1.58137 1.20927 0.97053 0.81387 0.99991 1.20564 0.84023 0.82619 0.78698 1.90704 1.29979 1.82591 1.35798 1.46071 1.30999 1.08036 1.47771 1.23100 0.97852 0.81449 1.02841 1.22872 0.88241 0.94280 0.97039 1.45261 1.34774 1.04028 1.53336 1.16224 0.80824 0.84908 0.79221 1.91050 1.44200 1.57560 1.53681 1.20138 0.93510 0.94125 1.02774 1.98227 1.43339 1.98603 1.67222 1.20760 0.99165 0.95484 1.00486 0.90467 0.87065 0.85648 0.76403 0.89100 0.88854 0.87450 0.87360 0.85941 0.85902 0.70813 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.24 10.96 21.82 0.24 -45.00 16 2 C 0.03 1.69 5.13 85.22 0.44 2.12 16 3 Si 0.98 39.60 29.60 68.60 2.03 41.63 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.49 -27.09 9.03 23.37 0.21 -26.88 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.05 2.91 5.57 -21.27 -0.12 2.79 16 10 C -0.19 -9.20 9.74 22.48 0.22 -8.98 16 11 C -0.15 -6.69 9.23 22.15 0.20 -6.49 16 12 C 0.11 5.04 6.67 38.68 0.26 5.30 16 13 N -0.75 -29.83 5.63 -342.58 -1.93 -31.75 16 14 C 0.13 4.45 3.65 85.63 0.31 4.77 16 15 C 0.55 15.81 7.86 87.66 0.69 16.50 16 16 O -0.52 -16.97 15.98 -2.87 -0.05 -17.01 16 17 N -0.58 -11.84 3.00 -771.18 -2.32 -14.16 16 18 C 0.07 0.64 7.20 86.65 0.62 1.26 16 19 C 0.10 0.18 8.08 86.58 0.70 0.88 16 20 N -0.71 -6.59 6.39 -476.64 -3.04 -9.63 16 21 C 0.69 14.07 8.51 179.57 1.53 15.59 16 22 O -0.59 -17.12 15.01 -3.84 -0.06 -17.17 16 23 C -0.08 -3.73 6.30 22.19 0.14 -3.59 16 24 Cl -0.10 -4.45 27.55 -2.72 -0.07 -4.53 16 25 C -0.14 -7.56 8.40 22.49 0.19 -7.37 16 26 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 27 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.13 5.05 6.68 -2.91 -0.02 5.03 16 29 H 0.40 16.06 6.07 -92.71 -0.56 15.50 16 30 H 0.09 3.10 7.35 -2.39 -0.02 3.08 16 31 H 0.09 3.13 7.37 -2.39 -0.02 3.12 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.45 2.36 8.96 -92.71 -0.83 1.53 16 37 H 0.11 6.50 6.16 -2.91 -0.02 6.48 16 Total: -1.00 -72.63 330.22 -0.04 -72.68 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.24 Total: 29.06 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.39 Total: -4.11 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -7.05 Total: -100.55 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.10 Total: -34.19 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 17 Polarization: -4.45 SS G_CDS: -0.07 Total: -4.53 kcal Total: -72.63 -0.04 -72.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453137219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.473 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds