Wall clock time and date at job start Tue Mar 31 2020 13:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34949 * 126.03519 * 2 1 4 4 C 1.35308 * 107.74704 * 179.75297 * 3 2 1 5 5 C 1.39866 * 107.91903 * 0.39452 * 4 3 2 6 6 S 1.76199 * 125.89938 * 179.86521 * 5 4 3 7 7 O 1.42096 * 106.40640 * 161.08016 * 6 5 4 8 8 O 1.42107 * 106.40343 * 28.16416 * 6 5 4 9 9 N 1.65607 * 107.21918 * 274.62533 * 6 5 4 10 10 C 1.39672 * 120.00023 * 62.89434 * 9 6 5 11 11 C 1.39000 * 120.04424 * 74.83974 * 10 9 6 12 12 C 1.38146 * 120.06522 * 180.02562 * 11 10 9 13 13 C 1.38170 * 120.14164 * 359.72181 * 12 11 10 14 14 C 1.38918 * 120.07621 * 0.55797 * 13 12 11 15 15 O 1.35755 * 120.02901 * 179.71905 * 14 13 12 16 16 C 1.34828 * 116.99818 * 174.26933 * 15 14 13 17 17 H 1.08006 * 120.00128 * 5.07591 * 16 15 14 18 18 C 1.38658 * 119.99935 * 185.07446 * 16 15 14 19 19 N 1.31553 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47277 * 59.99871 * 20 18 16 22 22 H 1.48503 * 109.47087 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46873 * 299.99875 * 20 18 16 24 24 C 1.38752 * 120.03704 * 254.86334 * 10 9 6 25 25 N 1.30828 * 108.20400 * 359.60012 * 5 4 3 26 26 H 1.09007 * 109.46813 * 269.97463 * 1 2 3 27 27 H 1.08996 * 109.47950 * 29.97052 * 1 2 3 28 28 H 1.08997 * 109.47137 * 149.97751 * 1 2 3 29 29 H 1.08006 * 126.12464 * 0.02562 * 3 2 1 30 30 H 1.08009 * 126.04164 * 180.27411 * 4 3 2 31 31 H 0.96996 * 119.99396 * 242.89260 * 9 6 5 32 32 H 1.08001 * 119.96683 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.92844 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.96141 * 180.29762 * 13 12 11 35 35 H 0.96999 * 119.99942 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.06865 * 359.95769 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 0.0056 5 6 3.5346 -0.7319 -0.0001 6 16 4.9552 -1.7742 0.0004 7 8 4.5146 -3.0531 0.4358 8 8 5.9876 -1.0453 0.6502 9 7 5.4311 -1.9551 -1.5755 10 6 5.8503 -0.8437 -2.3103 11 6 7.1017 -0.2859 -2.0757 12 6 7.5165 0.8136 -2.8019 13 6 6.6919 1.3588 -3.7672 14 6 5.4377 0.8097 -4.0025 15 8 4.6260 1.3496 -4.9473 16 6 3.4742 0.6995 -5.2088 17 1 3.1942 -0.1613 -4.6196 18 6 2.6491 1.1359 -6.2341 19 7 2.9904 2.1841 -6.9521 20 14 1.0529 0.2355 -6.5959 21 1 0.1812 0.2710 -5.3943 22 1 0.3589 0.8950 -7.7312 23 1 1.3500 -1.1756 -6.9505 24 6 5.0178 -0.2948 -3.2751 25 7 2.2892 -1.1327 -0.0001 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3635 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9280 2.1194 0.0004 30 1 4.4210 1.2965 0.0112 31 1 5.4188 -2.8328 -1.9881 32 1 7.7500 -0.7121 -1.3244 33 1 8.4890 1.2455 -2.6175 34 1 7.0210 2.2155 -4.3366 35 1 2.4134 2.4892 -7.6696 36 1 4.0451 -0.7264 -3.4596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727356490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:33 Heat of formation + Delta-G solvation = 15.532952 kcal Electronic energy + Delta-G solvation = -25162.571631 eV Core-core repulsion = 21356.104279 eV Total energy + Delta-G solvation = -3806.467352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22917 -39.25137 -37.24429 -36.84434 -35.79053 -34.24621 -33.49015 -32.31236 -30.30463 -29.25584 -28.38232 -27.20028 -25.39255 -22.23051 -21.93383 -21.53899 -21.37189 -19.23055 -18.18584 -17.77636 -17.67994 -17.30207 -16.02582 -15.82976 -15.56829 -15.13933 -14.90673 -14.58821 -14.24158 -13.98409 -13.69047 -13.47913 -13.14340 -13.04056 -12.72206 -12.68568 -12.39586 -12.03648 -11.93566 -11.85934 -11.55481 -11.38719 -11.18616 -10.99503 -10.98490 -10.86036 -10.56831 -9.88145 -9.71359 -9.55985 -8.92862 -8.77689 -8.20270 -7.36497 -6.53946 -4.13416 0.36119 1.47518 1.92955 2.24640 2.29744 2.41416 3.02727 3.06141 3.08154 3.15667 3.76578 3.87275 4.22858 4.39617 4.65426 4.81979 4.92934 4.97953 5.17444 5.20782 5.31858 5.54691 5.59394 5.68831 5.72366 5.87042 6.02718 6.19769 6.26458 6.51294 6.64725 6.81724 6.93390 7.07864 7.16194 7.19499 7.23959 7.33505 7.70603 7.90165 8.91480 9.60063 10.63656 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005831 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.046213 B = 4800.683559 C = 6427.472593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.354 5.354 3 C 0.050 3.950 4 C -0.182 4.182 5 C -0.483 4.483 6 S 2.727 3.273 7 O -0.952 6.952 8 O -0.935 6.935 9 N -1.053 6.053 10 C 0.156 3.844 11 C -0.191 4.191 12 C -0.071 4.071 13 C -0.179 4.179 14 C 0.156 3.844 15 O -0.174 6.174 16 C -0.392 4.392 17 H 0.089 0.911 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.937 3.063 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.220 4.220 25 N -0.188 5.188 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.423 0.577 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.271 0.729 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -2.657 11.481 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.140 5.140 3 C -0.095 4.095 4 C -0.212 4.212 5 C -0.729 4.729 6 S 2.811 3.189 7 O -0.942 6.942 8 O -0.924 6.924 9 N -0.810 5.810 10 C 0.063 3.937 11 C -0.213 4.213 12 C -0.090 4.090 13 C -0.199 4.199 14 C 0.102 3.898 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.106 0.894 18 C -0.163 4.163 19 N -0.495 5.495 20 Si 0.762 3.238 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.243 4.243 25 N -0.016 5.016 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.202 0.798 30 H 0.182 0.818 31 H 0.262 0.738 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.383 -3.506 11.981 12.709 hybrid contribution -1.149 0.373 -0.798 1.448 sum -3.533 -3.133 11.183 12.139 Atomic orbital electron populations 1.22040 0.73682 1.05396 1.03723 1.48977 1.07242 1.04234 1.53529 1.22683 0.90992 0.93602 1.02214 1.21195 0.98140 0.91850 1.09973 1.34897 1.12446 1.09957 1.15610 1.01430 0.72703 0.72598 0.72214 1.93584 1.82519 1.38796 1.79275 1.93618 1.52513 1.74286 1.72015 1.52889 1.80665 1.15082 1.32348 1.16947 0.93345 0.88398 0.95043 1.20919 0.95745 1.00384 1.04207 1.20576 0.98610 0.95183 0.94648 1.20374 0.93080 1.03812 1.02650 1.19179 0.90387 0.90911 0.89365 1.84003 1.29191 1.46450 1.48101 1.21216 0.95494 1.12900 1.17240 0.89354 1.25236 0.99354 0.96583 0.95093 1.70016 1.37518 1.22728 1.19225 0.85847 0.80232 0.79324 0.78418 1.19782 1.20135 1.19412 1.21303 1.01667 1.00474 1.00846 1.77337 0.99460 1.08129 1.16654 0.90181 0.88717 0.88768 0.79801 0.81824 0.73832 0.86129 0.86123 0.86084 0.91907 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.47 59.84 0.69 1.50 16 2 N -0.35 -4.91 4.01 -68.17 -0.27 -5.19 16 3 C 0.05 0.67 11.49 -17.23 -0.20 0.47 16 4 C -0.18 -2.81 10.63 -40.02 -0.43 -3.24 16 5 C -0.48 -8.11 7.13 -17.37 -0.12 -8.23 16 6 S 2.73 44.12 5.86 -107.50 -0.63 43.49 16 7 O -0.95 -16.91 18.01 -57.17 -1.03 -17.94 16 8 O -0.94 -16.26 16.95 -57.17 -0.97 -17.23 16 9 N -1.05 -16.17 5.70 32.40 0.18 -15.98 16 10 C 0.16 2.77 5.78 -83.81 -0.48 2.29 16 11 C -0.19 -3.23 9.30 -39.33 -0.37 -3.59 16 12 C -0.07 -1.18 10.03 -39.64 -0.40 -1.58 16 13 C -0.18 -3.48 9.99 -39.35 -0.39 -3.87 16 14 C 0.16 3.52 6.64 -39.14 -0.26 3.26 16 15 O -0.17 -4.70 9.76 0.04 0.00 -4.70 16 16 C -0.39 -10.51 9.49 30.89 0.29 -10.22 16 17 H 0.09 2.22 5.20 -52.48 -0.27 1.95 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -24.29 13.67 55.48 0.76 -23.53 16 20 Si 0.94 19.94 29.55 -169.99 -5.02 14.91 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.22 -4.53 9.09 -39.20 -0.36 -4.89 16 25 N -0.19 -3.19 12.57 31.27 0.39 -2.80 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.16 2.35 8.06 -52.48 -0.42 1.93 16 31 H 0.42 5.40 8.95 -34.47 -0.31 5.09 16 32 H 0.12 1.86 7.91 -52.49 -0.42 1.44 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -35.13 336.60 -7.02 -42.15 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.39 Total: 8.82 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -2.12 Total: -27.08 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 1.06 Total: -47.50 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -2.00 Total: -39.87 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.63 Total: 43.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.13 -7.02 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727356490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.683 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds