Wall clock time and date at job start Tue Mar 31 2020 13:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34949 * 126.03519 * 2 1 4 4 C 1.35308 * 107.74704 * 179.75297 * 3 2 1 5 5 C 1.39866 * 107.91903 * 0.39452 * 4 3 2 6 6 S 1.76199 * 125.89938 * 179.86521 * 5 4 3 7 7 O 1.42096 * 106.40640 * 161.08016 * 6 5 4 8 8 O 1.42107 * 106.40343 * 28.16416 * 6 5 4 9 9 N 1.65607 * 107.21918 * 274.62533 * 6 5 4 10 10 C 1.39672 * 120.00023 * 62.89434 * 9 6 5 11 11 C 1.39000 * 120.04424 * 74.83974 * 10 9 6 12 12 C 1.38146 * 120.06522 * 180.02562 * 11 10 9 13 13 C 1.38170 * 120.14164 * 359.72181 * 12 11 10 14 14 C 1.38918 * 120.07621 * 0.55797 * 13 12 11 15 15 O 1.35755 * 120.02901 * 179.71905 * 14 13 12 16 16 C 1.34828 * 116.99818 * 174.26933 * 15 14 13 17 17 H 1.08006 * 120.00128 * 5.07591 * 16 15 14 18 18 C 1.38658 * 119.99935 * 185.07446 * 16 15 14 19 19 N 1.31553 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47277 * 59.99871 * 20 18 16 22 22 H 1.48503 * 109.47087 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46873 * 299.99875 * 20 18 16 24 24 C 1.38752 * 120.03704 * 254.86334 * 10 9 6 25 25 N 1.30828 * 108.20400 * 359.60012 * 5 4 3 26 26 H 1.09007 * 109.46813 * 269.97463 * 1 2 3 27 27 H 1.08996 * 109.47950 * 29.97052 * 1 2 3 28 28 H 1.08997 * 109.47137 * 149.97751 * 1 2 3 29 29 H 1.08006 * 126.12464 * 0.02562 * 3 2 1 30 30 H 1.08009 * 126.04164 * 180.27411 * 4 3 2 31 31 H 0.96996 * 119.99396 * 242.89260 * 9 6 5 32 32 H 1.08001 * 119.96683 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.92844 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.96141 * 180.29762 * 13 12 11 35 35 H 0.96999 * 119.99942 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.06865 * 359.95769 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 0.0056 5 6 3.5346 -0.7319 -0.0001 6 16 4.9552 -1.7742 0.0004 7 8 4.5146 -3.0531 0.4358 8 8 5.9876 -1.0453 0.6502 9 7 5.4311 -1.9551 -1.5755 10 6 5.8503 -0.8437 -2.3103 11 6 7.1017 -0.2859 -2.0757 12 6 7.5165 0.8136 -2.8019 13 6 6.6919 1.3588 -3.7672 14 6 5.4377 0.8097 -4.0025 15 8 4.6260 1.3496 -4.9473 16 6 3.4742 0.6995 -5.2088 17 1 3.1942 -0.1613 -4.6196 18 6 2.6491 1.1359 -6.2341 19 7 2.9904 2.1841 -6.9521 20 14 1.0529 0.2355 -6.5959 21 1 0.1812 0.2710 -5.3943 22 1 0.3589 0.8950 -7.7312 23 1 1.3500 -1.1756 -6.9505 24 6 5.0178 -0.2948 -3.2751 25 7 2.2892 -1.1327 -0.0001 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3635 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9280 2.1194 0.0004 30 1 4.4210 1.2965 0.0112 31 1 5.4188 -2.8328 -1.9881 32 1 7.7500 -0.7121 -1.3244 33 1 8.4890 1.2455 -2.6175 34 1 7.0210 2.2155 -4.3366 35 1 2.4134 2.4892 -7.6696 36 1 4.0451 -0.7264 -3.4596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727356490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:33 Heat of formation + Delta-G solvation = -11.451552 kcal Electronic energy + Delta-G solvation = -25163.741767 eV Core-core repulsion = 21356.104279 eV Total energy + Delta-G solvation = -3807.637488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32242 -40.87857 -38.78477 -38.31556 -37.14865 -35.70013 -34.47312 -34.21019 -31.40799 -30.82776 -29.91907 -28.11887 -27.28928 -23.51643 -23.32829 -23.10819 -22.42958 -20.58827 -19.83456 -19.32041 -18.97587 -18.58865 -17.42998 -17.08454 -16.75241 -16.58779 -16.32505 -16.22156 -15.84912 -15.49326 -14.95769 -14.65186 -14.54187 -14.42204 -13.88791 -13.79190 -13.63588 -13.51996 -13.40756 -13.30525 -12.98849 -12.83165 -12.67943 -12.56232 -12.40909 -12.19924 -12.13620 -11.38800 -11.15648 -10.89123 -10.79103 -9.88872 -9.68500 -9.03283 -8.47429 -6.14893 -0.92959 0.31898 0.43538 0.70550 1.19066 1.31039 1.39995 1.43660 1.46082 1.89609 2.14144 2.49368 2.78208 3.07211 3.12803 3.51054 3.65737 3.90474 4.12137 4.19375 4.33203 4.37114 4.41281 4.50628 4.52975 4.59661 4.61768 4.68641 5.06170 5.09422 5.14163 5.21633 5.60468 5.61797 5.66878 5.85481 5.88551 6.01350 6.11228 6.22525 6.97566 7.77146 8.74765 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005831 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.046213 B = 4800.683559 C = 6427.472593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.351 5.351 3 C 0.058 3.942 4 C -0.210 4.210 5 C -0.502 4.502 6 S 2.747 3.253 7 O -0.969 6.969 8 O -0.947 6.947 9 N -1.046 6.046 10 C 0.162 3.838 11 C -0.177 4.177 12 C -0.056 4.056 13 C -0.183 4.183 14 C 0.124 3.876 15 O -0.223 6.223 16 C -0.408 4.408 17 H 0.093 0.907 18 C -0.015 4.015 19 N -0.914 5.914 20 Si 1.005 2.995 21 H -0.259 1.259 22 H -0.269 1.269 23 H -0.263 1.263 24 C -0.224 4.224 25 N -0.225 5.225 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.225 0.775 30 H 0.168 0.832 31 H 0.435 0.565 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.126 0.874 35 H 0.273 0.727 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -2.953 12.964 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.137 5.137 3 C -0.088 4.088 4 C -0.240 4.240 5 C -0.748 4.748 6 S 2.831 3.169 7 O -0.959 6.959 8 O -0.936 6.936 9 N -0.805 5.805 10 C 0.068 3.932 11 C -0.198 4.198 12 C -0.074 4.074 13 C -0.203 4.203 14 C 0.072 3.928 15 O -0.129 6.129 16 C -0.485 4.485 17 H 0.111 0.889 18 C -0.213 4.213 19 N -0.552 5.552 20 Si 0.825 3.175 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.247 4.247 25 N -0.053 5.053 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.112 0.888 29 H 0.242 0.758 30 H 0.185 0.815 31 H 0.276 0.724 32 H 0.165 0.835 33 H 0.184 0.816 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.384 -3.856 13.507 14.247 hybrid contribution -0.979 0.445 -1.034 1.492 sum -3.363 -3.411 12.473 13.361 Atomic orbital electron populations 1.22501 0.70970 1.06698 1.05843 1.49404 1.08826 1.03600 1.51843 1.23344 0.90344 0.95135 1.00002 1.21483 0.99534 0.91582 1.11410 1.34815 1.12592 1.10606 1.16780 1.00701 0.72308 0.71950 0.71891 1.93556 1.82798 1.39899 1.79639 1.93590 1.53210 1.74411 1.72404 1.52775 1.80611 1.15144 1.31970 1.16944 0.93298 0.88738 0.94250 1.21372 0.95171 0.99630 1.03616 1.21038 0.99647 0.94188 0.92534 1.20663 0.92308 1.03985 1.03347 1.19688 0.91370 0.92238 0.89468 1.83969 1.30153 1.48229 1.50588 1.21589 0.96026 1.13185 1.17660 0.88928 1.26362 1.02886 0.97381 0.94667 1.70147 1.39430 1.25022 1.20579 0.84838 0.75808 0.78063 0.78751 1.18348 1.19353 1.18743 1.21235 1.01528 1.00249 1.01639 1.77250 0.99870 1.09979 1.18233 0.87634 0.86137 0.88799 0.75844 0.81463 0.72420 0.83549 0.81650 0.85604 0.91813 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 11.47 127.77 1.47 2.66 16 2 N -0.35 -9.15 4.01 -369.57 -1.48 -10.63 16 3 C 0.06 1.43 11.49 83.54 0.96 2.39 16 4 C -0.21 -6.31 10.63 21.99 0.23 -6.07 16 5 C -0.50 -16.61 7.13 85.24 0.61 -16.00 16 6 S 2.75 86.39 5.86 -56.49 -0.33 86.06 16 7 O -0.97 -33.86 18.01 -128.00 -2.31 -36.16 16 8 O -0.95 -31.43 16.95 -128.00 -2.17 -33.60 16 9 N -1.05 -30.88 5.70 -51.41 -0.29 -31.17 16 10 C 0.16 5.52 5.78 38.20 0.22 5.74 16 11 C -0.18 -5.42 9.30 22.43 0.21 -5.21 16 12 C -0.06 -1.66 10.03 22.23 0.22 -1.44 16 13 C -0.18 -6.95 9.99 22.42 0.22 -6.72 16 14 C 0.12 5.67 6.64 22.56 0.15 5.82 16 15 O -0.22 -12.56 9.76 -22.77 -0.22 -12.78 16 16 C -0.41 -22.69 9.49 67.92 0.64 -22.05 16 17 H 0.09 4.84 5.20 -2.91 -0.02 4.82 16 18 C -0.01 -0.79 5.49 84.83 0.47 -0.33 16 19 N -0.91 -53.62 13.67 21.61 0.30 -53.32 16 20 Si 1.01 41.35 29.55 68.60 2.03 43.37 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 C -0.22 -9.26 9.09 22.52 0.20 -9.05 16 25 N -0.22 -7.48 12.57 -54.98 -0.69 -8.17 16 26 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.44 10.61 8.95 -96.75 -0.87 9.74 16 32 H 0.15 3.86 7.91 -2.91 -0.02 3.84 16 33 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 Total: -1.00 -79.00 336.60 0.71 -78.28 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.28 Total: 28.38 kcal Atomic # 6 Polarization: -55.86 SS G_CDS: 5.61 Total: -50.25 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -2.17 Total: -103.29 kcal Atomic # 8 Polarization: -77.85 SS G_CDS: -4.70 Total: -82.54 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 86.39 SS G_CDS: -0.33 Total: 86.06 kcal Total: -79.00 0.71 -78.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727356490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.832 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds