Wall clock time and date at job start Tue Mar 31 2020 13:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48492 * 109.47114 * 269.99670 * 3 2 1 5 5 H 1.48503 * 109.47127 * 30.00213 * 3 2 1 6 6 H 1.48505 * 109.46928 * 149.99614 * 3 2 1 7 7 C 1.38652 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00272 * 359.97438 * 7 2 1 9 9 O 1.34837 * 119.99560 * 180.02562 * 7 2 1 10 10 C 1.35761 * 116.99283 * 185.07792 * 9 7 2 11 11 C 1.39042 * 119.98089 * 174.48029 * 10 9 7 12 12 C 1.38234 * 120.26883 * 179.97438 * 11 10 9 13 13 C 1.37983 * 120.23969 * 0.02562 * 12 11 10 14 14 C 1.39828 * 119.97106 * 359.97438 * 13 12 11 15 15 C 1.47283 * 120.13541 * 179.97438 * 14 13 12 16 16 C 1.34627 * 119.99927 * 0.02562 * 15 14 13 17 17 C 1.46640 * 120.00070 * 179.97438 * 16 15 14 18 18 N 1.29427 * 124.88373 * 179.97438 * 17 16 15 19 19 C 1.33741 * 118.01132 * 180.02562 * 18 17 16 20 20 C 1.41342 * 128.72715 * 180.02562 * 19 18 17 21 21 C 1.36072 * 120.54215 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.80695 * 0.02562 * 21 20 19 23 23 C 1.37678 * 120.01115 * 0.02562 * 22 21 20 24 24 C 1.39355 * 120.05314 * 0.27430 * 23 22 21 25 25 S 1.75850 * 124.88331 * 0.02682 * 17 16 15 26 26 C 1.38532 * 119.99237 * 354.73259 * 10 9 7 27 27 H 0.97001 * 120.00066 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.86902 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.87834 * 179.97438 * 12 11 10 30 30 H 1.08005 * 120.01798 * 180.02562 * 13 12 11 31 31 H 1.07999 * 120.00266 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.99807 * 359.97438 * 16 15 14 33 33 H 1.08002 * 119.72702 * 359.94853 * 20 19 18 34 34 H 1.08000 * 119.60230 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.99607 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.97308 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.12273 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 5.3571 -2.4700 -0.2270 12 6 5.9909 -3.6938 -0.3353 13 6 5.2549 -4.8609 -0.3243 14 6 3.8629 -4.8078 -0.2026 15 6 3.0737 -6.0513 -0.1910 16 6 3.6925 -7.2422 -0.2971 17 6 2.9068 -8.4803 -0.2850 18 7 3.4020 -9.6722 -0.3810 19 6 2.5562 -10.7078 -0.3552 20 6 2.8458 -12.0885 -0.4416 21 6 1.8449 -13.0092 -0.3969 22 6 0.5207 -12.6139 -0.2661 23 6 0.2066 -11.2761 -0.1806 24 6 1.2168 -10.3175 -0.2308 25 16 1.1561 -8.5591 -0.1391 26 6 3.2233 -3.5702 -0.0984 27 1 -0.4850 0.8401 -0.0004 28 1 5.9392 -1.5603 -0.2367 29 1 7.0659 -3.7364 -0.4298 30 1 5.7538 -5.8151 -0.4088 31 1 1.9987 -6.0078 -0.0973 32 1 4.7675 -7.2857 -0.3912 33 1 3.8700 -12.4155 -0.5445 34 1 2.0835 -14.0604 -0.4638 35 1 -0.2634 -13.3558 -0.2316 36 1 -0.8238 -10.9693 -0.0785 37 1 2.1482 -3.5218 -0.0087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727745133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:02 Heat of formation + Delta-G solvation = 71.452237 kcal Electronic energy + Delta-G solvation = -21875.812090 eV Core-core repulsion = 18482.618843 eV Total energy + Delta-G solvation = -3393.193247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.072 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40384 -39.32794 -37.40406 -36.81717 -34.11379 -32.42009 -31.37786 -30.65929 -29.47308 -28.56394 -25.48598 -24.93250 -23.56858 -22.41114 -21.77638 -20.86612 -19.70635 -18.44957 -17.88466 -17.42034 -16.49526 -15.96696 -15.49621 -15.38982 -14.94224 -14.87295 -14.31050 -14.05840 -13.99134 -13.90376 -13.48929 -13.14431 -12.67394 -12.46742 -12.36626 -12.27229 -12.17217 -12.04917 -11.80253 -11.05720 -11.00452 -10.95071 -10.73123 -10.35908 -10.27016 -10.17478 -9.80225 -9.53388 -8.97411 -8.81023 -8.35817 -7.81218 -7.45322 -6.48306 -4.16221 -0.12008 0.89288 1.06328 1.18513 1.53201 2.08673 2.19595 2.92336 3.18075 3.21844 3.35644 3.50472 3.66834 4.17925 4.37030 4.41794 4.59492 4.71420 4.77654 4.94415 4.99558 5.02846 5.04459 5.24833 5.38882 5.51400 5.57928 5.65992 5.85394 5.86557 5.93992 5.94535 6.09065 6.19972 6.28319 6.44257 6.46628 6.60392 6.94481 7.02373 7.12178 7.43919 7.48013 7.68551 7.94352 8.86373 9.46443 10.59034 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.002394 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.011781 B =11693.390983 C =12983.892310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.154 3.846 11 C -0.175 4.175 12 C -0.082 4.082 13 C -0.180 4.180 14 C -0.039 4.039 15 C -0.026 4.026 16 C -0.125 4.125 17 C 0.171 3.829 18 N -0.475 5.475 19 C 0.092 3.908 20 C -0.070 4.070 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.070 4.070 24 C -0.183 4.183 25 S 0.065 5.935 26 C -0.192 4.192 27 H 0.280 0.720 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -21.228 -0.622 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.101 3.899 11 C -0.194 4.194 12 C -0.101 4.101 13 C -0.199 4.199 14 C -0.039 4.039 15 C -0.050 4.050 16 C -0.147 4.147 17 C -0.108 4.108 18 N -0.188 5.188 19 C -0.030 4.030 20 C -0.091 4.091 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.301 4.301 25 S 0.323 5.677 26 C -0.211 4.211 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.330 -20.169 -0.542 20.450 hybrid contribution 0.220 -0.181 -0.067 0.293 sum 3.550 -20.351 -0.608 20.667 Atomic orbital electron populations 1.69644 1.05581 1.28622 1.47580 1.24468 0.95028 0.98885 0.95513 0.86180 0.80338 0.81377 0.79013 1.19827 1.20728 1.18323 1.20745 0.76782 0.96659 1.52641 0.87606 1.83600 1.22691 1.25370 1.80317 1.18983 0.91704 0.85496 0.93678 1.20410 0.91942 0.98194 1.08879 1.20599 0.98867 0.91603 0.98986 1.20893 0.92751 0.97913 1.08372 1.18501 0.92886 0.91397 1.01140 1.22354 0.99132 0.91480 0.92027 1.21164 0.99603 0.86904 1.06982 1.25750 0.92390 0.94736 0.97917 1.66395 1.36655 0.97569 1.18149 1.19107 0.87021 0.94084 1.02814 1.20482 1.00413 0.88766 0.99408 1.20692 0.92520 0.99711 1.00004 1.21124 0.96845 0.95063 1.00041 1.20379 0.97677 0.91642 0.99544 1.23881 0.98376 0.97365 1.10524 1.85171 1.08709 0.99369 1.74460 1.21470 1.01156 0.90908 1.07615 0.90947 0.86225 0.86350 0.86642 0.86092 0.83250 0.84885 0.84902 0.84848 0.85215 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.96 55.48 0.77 -23.93 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.09 28.62 -169.99 -4.86 16.22 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -10.67 9.94 30.89 0.31 -10.37 16 8 H 0.11 2.92 5.43 -52.49 -0.29 2.63 16 9 O -0.21 -5.43 8.58 -0.01 0.00 -5.43 16 10 C 0.15 3.35 6.64 -39.18 -0.26 3.09 16 11 C -0.17 -3.23 9.98 -39.29 -0.39 -3.62 16 12 C -0.08 -1.28 10.02 -39.68 -0.40 -1.68 16 13 C -0.18 -2.79 9.41 -39.08 -0.37 -3.16 16 14 C -0.04 -0.66 5.87 -105.08 -0.62 -1.28 16 15 C -0.03 -0.39 9.45 -37.18 -0.35 -0.74 16 16 C -0.12 -1.70 9.59 -37.47 -0.36 -2.06 16 17 C 0.17 2.42 7.33 -15.18 -0.11 2.31 16 18 N -0.48 -7.02 10.58 -8.83 -0.09 -7.12 16 19 C 0.09 1.23 6.93 -85.17 -0.59 0.64 16 20 C -0.07 -0.72 10.05 -39.18 -0.39 -1.12 16 21 C -0.11 -0.86 9.93 -40.15 -0.40 -1.26 16 22 C -0.11 -0.85 10.05 -39.57 -0.40 -1.25 16 23 C -0.07 -0.68 10.07 -39.37 -0.40 -1.08 16 24 C -0.18 -2.29 6.54 -38.48 -0.25 -2.55 16 25 S 0.07 0.84 22.14 -107.50 -2.38 -1.54 16 26 C -0.19 -3.90 8.91 -38.93 -0.35 -4.24 16 27 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.12 2.04 8.06 -52.48 -0.42 1.61 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 1.48 6.16 -52.48 -0.32 1.15 16 31 H 0.12 1.70 7.09 -52.49 -0.37 1.33 16 32 H 0.15 1.87 6.07 -52.49 -0.32 1.55 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 2.93 5.63 -52.49 -0.30 2.63 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -29.96 338.45 -10.15 -40.11 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.27 Total: 3.27 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -5.42 Total: -26.68 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.68 Total: -31.05 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: 0.00 Total: -5.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.86 Total: 16.22 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.38 Total: -1.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.96 -10.15 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727745133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.559 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds