Wall clock time and date at job start Tue Mar 31 2020 14:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00449 * 2 1 4 4 H 1.48500 * 109.47376 * 270.01002 * 3 2 1 5 5 H 1.48506 * 109.46589 * 30.00802 * 3 2 1 6 6 H 1.48494 * 109.47067 * 150.00278 * 3 2 1 7 7 C 1.38810 * 119.99387 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00260 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99623 * 179.97438 * 7 2 1 10 10 C 1.76200 * 100.00026 * 185.65523 * 9 7 2 11 11 C 1.39119 * 120.18950 * 6.83928 * 10 9 7 12 12 C 1.37905 * 120.04723 * 180.27862 * 11 10 9 13 13 C 1.38653 * 120.44259 * 359.71892 * 12 11 10 14 14 C 1.37814 * 120.37877 * 0.02867 * 13 12 11 15 15 C 1.39672 * 119.93699 * 359.97004 * 14 13 12 16 16 C 1.47431 * 120.21229 * 180.02562 * 15 14 13 17 17 O 1.21612 * 119.99928 * 180.02562 * 16 15 14 18 18 N 1.34777 * 120.00212 * 0.02562 * 16 15 14 19 19 C 1.46501 * 120.00153 * 179.72411 * 18 16 15 20 20 C 1.53002 * 109.46894 * 180.27487 * 19 18 16 21 21 H 1.08998 * 110.76199 * 59.29675 * 20 19 18 22 22 C 1.55134 * 110.85423 * 182.79317 * 20 19 18 23 23 C 1.54039 * 106.80757 * 160.10292 * 22 20 19 24 24 C 1.54273 * 109.08778 * 313.05513 * 23 22 20 25 25 S 1.83097 * 104.65045 * 27.82480 * 24 23 22 26 26 H 0.96999 * 119.99827 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.97530 * 0.02562 * 11 10 9 28 28 H 1.08005 * 119.77669 * 179.74713 * 12 11 10 29 29 H 1.07997 * 119.81525 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.02928 * 180.02562 * 14 13 12 31 31 H 0.97005 * 119.99865 * 359.97438 * 18 16 15 32 32 H 1.08998 * 109.46808 * 300.27377 * 19 18 16 33 33 H 1.08999 * 109.46928 * 60.27258 * 19 18 16 34 34 H 1.08999 * 109.97966 * 279.65594 * 22 20 19 35 35 H 1.09004 * 109.97677 * 40.93358 * 22 20 19 36 36 H 1.09003 * 109.63550 * 193.02412 * 23 22 20 37 37 H 1.09005 * 109.42445 * 72.96382 * 23 22 20 38 38 H 1.08994 * 110.40135 * 269.03227 * 24 23 22 39 39 H 1.09007 * 110.40178 * 146.61652 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4472 2.6525 0.7003 6 1 3.5472 1.4399 0.6999 7 6 2.0095 -1.2022 -0.0005 8 1 1.4694 -2.1375 -0.0005 9 16 3.7715 -1.2023 -0.0012 10 6 4.0774 -2.9290 -0.1727 11 6 3.0229 -3.8067 -0.4033 12 6 3.2649 -5.1583 -0.5314 13 6 4.5570 -5.6526 -0.4377 14 6 5.6154 -4.7987 -0.2147 15 6 5.3884 -3.4269 -0.0826 16 6 6.5163 -2.5078 0.1554 17 8 6.3141 -1.3141 0.2703 18 7 7.7714 -2.9904 0.2457 19 6 8.8929 -2.0764 0.4763 20 6 10.1977 -2.8737 0.5302 21 1 10.3582 -3.4156 -0.4018 22 6 11.4000 -1.9446 0.8431 23 6 12.5335 -2.8449 1.3698 24 6 11.9610 -3.8084 2.4300 25 16 10.2036 -4.0207 1.9620 26 1 -0.4850 0.8401 0.0004 27 1 2.0136 -3.4298 -0.4781 28 1 2.4426 -5.8363 -0.7063 29 1 4.7349 -6.7130 -0.5391 30 1 6.6196 -5.1898 -0.1431 31 1 7.9327 -3.9426 0.1545 32 1 8.9435 -1.3513 -0.3360 33 1 8.7471 -1.5536 1.4215 34 1 11.7190 -1.4302 -0.0635 35 1 11.1202 -1.2173 1.6053 36 1 13.3125 -2.2285 1.8185 37 1 12.9546 -3.4182 0.5439 38 1 12.0389 -3.3690 3.4244 39 1 12.4819 -4.7653 2.3946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756985044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:39 Heat of formation + Delta-G solvation = -15.238218 kcal Electronic energy + Delta-G solvation = -21788.194255 eV Core-core repulsion = 18526.685780 eV Total energy + Delta-G solvation = -3261.508476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 323.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.62356 -37.69477 -36.78549 -34.53426 -32.69236 -31.40433 -30.35362 -29.95491 -26.51301 -25.88529 -23.84914 -22.56861 -21.91473 -21.37523 -20.04856 -18.35993 -17.28180 -17.03088 -16.10031 -15.96008 -15.51360 -15.12412 -14.99729 -14.55932 -14.50470 -13.96702 -13.92310 -13.69221 -13.19867 -13.16610 -12.67159 -12.42468 -12.10306 -12.03164 -11.90740 -11.85763 -11.54366 -11.31106 -11.27400 -11.17048 -10.86906 -10.48677 -10.18820 -9.79980 -9.67966 -9.43494 -8.88999 -8.81701 -8.39308 -8.20772 -7.95319 -6.77812 -6.46208 -4.17068 1.43442 1.45281 1.94632 2.05042 2.88585 3.21745 3.33151 3.38274 3.43000 3.49534 4.16406 4.16969 4.22487 4.39399 4.41871 4.59182 4.66949 4.75629 4.80638 4.96936 5.15793 5.20002 5.24691 5.29003 5.34207 5.41556 5.53857 5.55449 5.61866 5.77200 5.91847 6.08761 6.29151 6.52385 6.60817 6.78280 6.97941 7.08477 7.48164 7.77109 7.78118 8.36481 8.66004 8.98031 10.61110 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.003403 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.581669 B = 8225.241256 C = 9643.086927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.103 3.897 3 Si 0.850 3.150 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.234 1.234 7 C -0.579 4.579 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.029 4.029 11 C -0.145 4.145 12 C -0.076 4.076 13 C -0.177 4.177 14 C -0.064 4.064 15 C -0.172 4.172 16 C 0.556 3.444 17 O -0.512 6.512 18 N -0.735 5.735 19 C 0.142 3.858 20 C -0.055 4.055 21 H 0.104 0.896 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.078 4.078 25 S -0.277 6.277 26 H 0.274 0.726 27 H 0.147 0.853 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.504 -8.387 0.711 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.108 4.108 3 Si 0.674 3.326 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.158 1.158 7 C -0.725 4.725 8 H 0.123 0.877 9 S 0.346 5.654 10 C -0.148 4.148 11 C -0.170 4.170 12 C -0.098 4.098 13 C -0.200 4.200 14 C -0.084 4.084 15 C -0.186 4.186 16 C 0.345 3.655 17 O -0.390 6.390 18 N -0.390 5.390 19 C 0.017 3.983 20 C -0.184 4.184 21 H 0.122 0.878 22 C -0.162 4.162 23 C -0.166 4.166 24 C -0.227 4.227 25 S -0.052 6.052 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.936 -6.768 1.415 23.955 hybrid contribution 0.238 -0.324 -0.646 0.761 sum 23.173 -7.092 0.769 24.246 Atomic orbital electron populations 1.69913 1.06156 1.28241 1.45400 1.24804 0.94519 0.99036 0.92427 0.86871 0.82069 0.83363 0.80330 1.18767 1.19400 1.15777 1.23533 0.91904 0.98325 1.58741 0.87667 1.84106 1.05075 0.97489 1.78763 1.22513 0.93934 1.01347 0.97023 1.21575 1.00125 0.92804 1.02458 1.21142 0.96463 0.95139 0.97062 1.20724 0.92879 0.98848 1.07585 1.20909 0.98154 0.91961 0.97380 1.19148 0.92025 0.93238 1.14227 1.18259 0.82283 0.88146 0.76762 1.90760 1.83341 1.15722 1.49146 1.45806 1.06168 1.10665 1.76366 1.21131 0.82525 0.91801 1.02860 1.24357 0.98071 0.97500 0.98489 0.87819 1.22632 0.92554 0.98142 1.02842 1.22319 0.98749 0.97423 0.98147 1.24011 0.93777 1.02777 1.02097 1.87936 1.15687 1.61367 1.40190 0.91551 0.83610 0.86598 0.86757 0.86979 0.76745 0.90321 0.90404 0.89271 0.89713 0.89768 0.90670 0.88923 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 13.96 55.49 0.77 -24.60 16 2 C 0.10 2.94 5.50 -17.46 -0.10 2.84 16 3 Si 0.85 21.08 27.74 -169.99 -4.71 16.36 16 4 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.23 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.58 -16.43 9.54 30.94 0.30 -16.13 16 8 H 0.11 3.08 5.21 -52.49 -0.27 2.80 16 9 S 0.08 2.19 16.53 -107.50 -1.78 0.41 16 10 C -0.03 -0.66 6.14 -38.39 -0.24 -0.90 16 11 C -0.14 -3.07 9.22 -39.38 -0.36 -3.44 16 12 C -0.08 -1.31 10.02 -39.55 -0.40 -1.71 16 13 C -0.18 -2.71 10.02 -39.58 -0.40 -3.10 16 14 C -0.06 -1.01 9.53 -39.20 -0.37 -1.38 16 15 C -0.17 -3.36 5.89 -104.76 -0.62 -3.97 16 16 C 0.56 10.49 7.75 -12.52 -0.10 10.39 16 17 O -0.51 -11.46 13.77 5.27 0.07 -11.39 16 18 N -0.74 -10.27 5.32 -61.38 -0.33 -10.60 16 19 C 0.14 1.66 5.21 -4.04 -0.02 1.64 16 20 C -0.06 -0.47 3.29 -25.60 -0.08 -0.55 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 22 C -0.12 -0.77 5.92 -25.06 -0.15 -0.92 16 23 C -0.13 -0.66 6.38 -25.52 -0.16 -0.82 16 24 C -0.08 -0.52 7.34 37.82 0.28 -0.24 16 25 S -0.28 -2.76 22.31 -107.50 -2.40 -5.16 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.15 3.35 5.04 -52.49 -0.26 3.09 16 28 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.38 6.40 -52.49 -0.34 1.04 16 31 H 0.40 4.75 6.27 -40.82 -0.26 4.50 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -32.51 342.91 -10.55 -43.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.93 Total: 5.04 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.42 Total: -18.30 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.45 Total: -35.19 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -4.18 Total: -4.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.51 -10.55 -43.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756985044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.827 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds