Wall clock time and date at job start Tue Mar 31 2020 14:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50704 * 109.47256 * 121.18066 * 3 2 1 5 5 N 1.36245 * 119.99696 * 81.91608 * 4 3 2 6 6 C 1.37958 * 120.00073 * 5.56189 * 5 4 3 7 7 C 1.40098 * 119.80503 * 52.36721 * 6 5 4 8 8 C 1.35868 * 120.19176 * 179.97438 * 7 6 5 9 9 C 1.41689 * 119.80268 * 359.97438 * 8 7 6 10 10 C 1.39625 * 120.18837 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99785 * 142.33957 * 10 9 8 12 12 C 1.46532 * 120.00096 * 322.33840 * 10 9 8 13 13 N 1.29528 * 119.99829 * 342.76907 * 12 10 9 14 14 Si 1.86794 * 120.00054 * 162.76300 * 12 10 9 15 15 H 1.48500 * 109.47166 * 179.97438 * 14 12 10 16 16 H 1.48497 * 109.47182 * 300.00338 * 14 12 10 17 17 H 1.48506 * 109.46830 * 60.00111 * 14 12 10 18 18 C 1.41652 * 119.62241 * 0.25143 * 9 8 7 19 19 N 1.48018 * 120.09801 * 179.72645 * 18 9 8 20 20 O 1.31704 * 120.00170 * 183.09315 * 19 18 9 21 21 O 1.31694 * 120.00134 * 3.08896 * 19 18 9 22 22 C 1.35898 * 119.80336 * 359.46544 * 18 9 8 23 23 C 1.37594 * 120.00264 * 261.91533 * 4 3 2 24 24 C 1.43199 * 119.99780 * 0.02562 * 23 4 3 25 25 N 4.10973 * 122.83397 * 42.85591 * 2 1 3 26 26 C 1.43203 * 119.99995 * 179.97438 * 23 4 3 27 27 N 5.60464 * 125.03762 * 106.28214 * 2 1 3 28 28 H 1.08999 * 109.47423 * 1.18331 * 3 2 1 29 29 H 1.09003 * 109.47327 * 241.17953 * 3 2 1 30 30 H 0.97002 * 119.99998 * 185.56702 * 5 4 3 31 31 H 1.07996 * 119.90583 * 359.97410 * 7 6 5 32 32 H 1.08000 * 120.09957 * 179.97438 * 8 7 6 33 33 H 0.97004 * 119.99882 * 355.29001 * 13 12 10 34 34 H 1.08000 * 119.90439 * 180.27035 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1100 0.7365 -1.2156 5 7 3.1800 2.0971 -1.2075 6 6 2.9014 2.7953 -0.0507 7 6 3.5578 2.4594 1.1406 8 6 3.2898 3.1422 2.2843 9 6 2.3438 4.1969 2.2696 10 6 2.0619 4.9036 3.4403 11 1 1.8841 5.9679 3.3990 12 6 2.0073 4.2009 4.7251 13 7 1.8853 2.9117 4.7534 14 14 2.1136 5.1644 6.3218 15 1 2.0349 4.2276 7.4714 16 1 3.4019 5.9013 6.3704 17 1 0.9878 6.1303 6.3930 18 6 1.6814 4.5266 1.0616 19 7 0.6868 5.6225 1.0357 20 8 0.0277 5.8875 -0.0734 21 8 0.4609 6.3326 2.1215 22 6 1.9657 3.8371 -0.0745 23 6 3.4976 0.0343 -2.3335 24 6 3.4235 -1.3957 -2.3422 25 7 3.3643 -2.5314 -2.3487 26 6 3.9742 0.7336 -3.4888 27 7 4.3537 1.2866 -4.4049 28 1 2.9718 -1.0266 -0.0212 29 1 2.9711 0.4962 0.9004 30 1 3.4257 2.5750 -2.0151 31 1 4.2788 1.6555 1.1498 32 1 3.7963 2.8817 3.2019 33 1 1.7615 2.4180 3.9277 34 1 1.4648 4.0900 -0.9973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:53 Heat of formation + Delta-G solvation = 136.041775 kcal Electronic energy + Delta-G solvation = -25378.064687 eV Core-core repulsion = 21473.671789 eV Total energy + Delta-G solvation = -3904.392898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.080 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49541 -38.67915 -37.11138 -36.69174 -36.33829 -36.06266 -34.72679 -33.01685 -32.54291 -31.26053 -30.11779 -29.42359 -26.46419 -24.86051 -22.95205 -22.07483 -21.14873 -20.13985 -19.29510 -18.59588 -17.93415 -17.41962 -16.77034 -15.80000 -15.38806 -15.27403 -14.82608 -14.77327 -14.59737 -14.39333 -14.33769 -13.80447 -13.56129 -13.40152 -13.22785 -13.07050 -12.94378 -12.76641 -12.49254 -12.38829 -12.22047 -12.04770 -11.94848 -11.68859 -11.56384 -11.02437 -10.99811 -10.68808 -10.06270 -9.92488 -9.61005 -9.51275 -9.03869 -8.92383 -8.35211 -7.91912 -5.61462 0.47336 0.63969 1.65940 2.15079 2.32359 2.45277 2.51080 2.64374 2.67380 2.69666 2.74491 2.75636 2.92151 3.07455 3.29828 3.49932 3.52716 3.76310 3.86257 3.99682 4.17771 4.68570 4.81221 4.98942 5.05854 5.16316 5.38149 5.59163 5.69622 5.93507 6.02254 6.24741 6.38353 6.57874 6.66921 6.75648 6.95565 7.08818 7.13448 7.38136 7.42755 7.51348 7.59806 7.62090 8.23662 8.78293 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003899 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.891839 B = 7180.465664 C = 8002.146004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.206 3.794 3 C -0.011 4.011 4 C 0.321 3.679 5 N -0.590 5.590 6 C -0.041 4.041 7 C -0.088 4.088 8 C -0.143 4.143 9 C 0.047 3.953 10 C -0.338 4.338 11 H 0.136 0.864 12 C 0.017 3.983 13 N -0.700 5.700 14 Si 1.079 2.921 15 H -0.263 1.263 16 H -0.261 1.261 17 H -0.257 1.257 18 C -0.092 4.092 19 N 0.034 4.966 20 O -0.330 6.330 21 O -0.256 6.256 22 C 0.004 3.996 23 C -0.170 4.170 24 C 0.287 3.713 25 N -0.436 5.436 26 C 0.275 3.725 27 N -0.434 5.434 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.415 0.585 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.312 0.688 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -4.439 2.554 9.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.113 4.113 3 C -0.051 4.051 4 C 0.192 3.808 5 N -0.198 5.198 6 C -0.136 4.136 7 C -0.108 4.108 8 C -0.163 4.163 9 C 0.042 3.958 10 C -0.364 4.364 11 H 0.153 0.847 12 C -0.216 4.216 13 N -0.319 5.319 14 Si 0.897 3.103 15 H -0.187 1.187 16 H -0.185 1.185 17 H -0.181 1.181 18 C -0.193 4.193 19 N 0.462 4.538 20 O -0.479 6.479 21 O -0.423 6.423 22 C -0.017 4.017 23 C -0.191 4.191 24 C -0.027 4.027 25 N -0.114 5.114 26 C -0.039 4.039 27 N -0.112 5.112 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.253 0.747 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.648 -5.637 2.794 9.153 hybrid contribution 0.131 0.817 -2.038 2.200 sum 6.779 -4.819 0.756 8.352 Atomic orbital electron populations 1.81273 1.12202 1.07259 1.06602 1.28051 0.94006 0.94450 0.94834 1.18698 0.84117 1.04127 0.98178 1.20098 0.84631 0.84098 0.91971 1.41132 1.62735 1.02735 1.13210 1.16654 1.07525 1.02719 0.86736 1.20589 0.98736 0.99554 0.91907 1.20965 0.99309 0.97913 0.98078 1.17284 0.93149 0.93871 0.91526 1.23640 1.21057 1.00555 0.91131 0.84699 1.29578 0.91277 0.95455 1.05279 1.70044 1.17110 1.08221 1.36517 0.83420 0.79849 0.75807 0.71241 1.18659 1.18506 1.18079 1.19426 1.02837 0.99434 0.97576 1.49729 1.01364 1.01444 1.01254 1.96131 1.54724 1.79398 1.17648 1.96064 1.76784 1.49746 1.19660 1.20129 0.91774 0.92424 0.97367 1.12103 1.30440 0.84215 0.92357 1.24504 0.92767 0.91058 0.94410 1.81362 1.12120 1.11189 1.06689 1.24768 0.92623 0.94015 0.92466 1.81285 1.12554 1.07759 1.09621 0.84365 0.83168 0.74657 0.85698 0.85276 0.87270 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.35 18.54 42.15 0.78 -5.57 16 2 C 0.21 2.57 15.31 -20.76 -0.32 2.25 16 3 C -0.01 -0.09 4.94 -30.67 -0.15 -0.24 16 4 C 0.32 2.92 5.81 -80.86 -0.47 2.45 16 5 N -0.59 -6.12 5.16 -6.19 -0.03 -6.15 16 6 C -0.04 -0.54 5.59 -83.73 -0.47 -1.01 16 7 C -0.09 -1.08 7.41 -39.73 -0.29 -1.37 16 8 C -0.14 -2.17 7.88 -39.11 -0.31 -2.48 16 9 C 0.05 0.90 5.15 -106.76 -0.55 0.35 16 10 C -0.34 -6.67 7.82 -35.72 -0.28 -6.95 16 11 H 0.14 2.83 5.82 -52.49 -0.31 2.53 16 12 C 0.02 0.30 5.23 -15.18 -0.08 0.22 16 13 N -0.70 -12.64 12.71 55.98 0.71 -11.92 16 14 Si 1.08 15.14 30.06 -169.99 -5.11 10.03 16 15 H -0.26 -3.65 7.11 56.52 0.40 -3.24 16 16 H -0.26 -3.41 7.11 56.52 0.40 -3.01 16 17 H -0.26 -3.68 7.11 56.52 0.40 -3.28 16 18 C -0.09 -1.91 6.90 -79.48 -0.55 -2.46 16 19 N 0.03 0.83 4.98 34.19 0.17 1.00 16 20 O -0.33 -8.43 19.13 -31.57 -0.60 -9.04 16 21 O -0.26 -6.42 16.21 -31.56 -0.51 -6.93 16 22 C 0.00 0.07 9.44 -39.74 -0.38 -0.30 16 23 C -0.17 -1.66 5.78 -106.28 -0.61 -2.28 16 24 C 0.29 3.16 13.61 -22.43 -0.31 2.85 16 25 N -0.44 -5.66 18.55 41.89 0.78 -4.88 16 26 C 0.27 3.20 13.95 -22.49 -0.31 2.89 16 27 N -0.43 -5.98 18.53 41.81 0.77 -5.21 16 28 H 0.14 0.79 6.76 -51.93 -0.35 0.44 16 29 H 0.15 1.08 4.41 -51.93 -0.23 0.85 16 30 H 0.41 4.09 7.53 -40.82 -0.31 3.78 16 31 H 0.13 1.04 7.00 -52.49 -0.37 0.67 16 32 H 0.13 1.85 7.17 -52.49 -0.38 1.47 16 33 H 0.31 5.62 6.66 -40.82 -0.27 5.34 16 34 H 0.13 2.25 7.54 -52.49 -0.40 1.86 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -27.80 332.90 -4.50 -32.30 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -1.40 Total: 7.41 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -5.08 Total: -6.07 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 3.18 Total: -32.73 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.12 Total: -15.97 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -5.11 Total: 10.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.80 -4.50 -32.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.345 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds