Wall clock time and date at job start Tue Mar 31 2020 14:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50704 * 109.47256 * 121.18066 * 3 2 1 5 5 N 1.36245 * 119.99696 * 81.91608 * 4 3 2 6 6 C 1.37958 * 120.00073 * 5.56189 * 5 4 3 7 7 C 1.40098 * 119.80503 * 52.36721 * 6 5 4 8 8 C 1.35868 * 120.19176 * 179.97438 * 7 6 5 9 9 C 1.41689 * 119.80268 * 359.97438 * 8 7 6 10 10 C 1.39625 * 120.18837 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99785 * 142.33957 * 10 9 8 12 12 C 1.46532 * 120.00096 * 322.33840 * 10 9 8 13 13 N 1.29528 * 119.99829 * 342.76907 * 12 10 9 14 14 Si 1.86794 * 120.00054 * 162.76300 * 12 10 9 15 15 H 1.48500 * 109.47166 * 179.97438 * 14 12 10 16 16 H 1.48497 * 109.47182 * 300.00338 * 14 12 10 17 17 H 1.48506 * 109.46830 * 60.00111 * 14 12 10 18 18 C 1.41652 * 119.62241 * 0.25143 * 9 8 7 19 19 N 1.48018 * 120.09801 * 179.72645 * 18 9 8 20 20 O 1.31704 * 120.00170 * 183.09315 * 19 18 9 21 21 O 1.31694 * 120.00134 * 3.08896 * 19 18 9 22 22 C 1.35898 * 119.80336 * 359.46544 * 18 9 8 23 23 C 1.37594 * 120.00264 * 261.91533 * 4 3 2 24 24 C 1.43199 * 119.99780 * 0.02562 * 23 4 3 25 25 N 4.10973 * 122.83397 * 42.85591 * 2 1 3 26 26 C 1.43203 * 119.99995 * 179.97438 * 23 4 3 27 27 N 5.60464 * 125.03762 * 106.28214 * 2 1 3 28 28 H 1.08999 * 109.47423 * 1.18331 * 3 2 1 29 29 H 1.09003 * 109.47327 * 241.17953 * 3 2 1 30 30 H 0.97002 * 119.99998 * 185.56702 * 5 4 3 31 31 H 1.07996 * 119.90583 * 359.97410 * 7 6 5 32 32 H 1.08000 * 120.09957 * 179.97438 * 8 7 6 33 33 H 0.97004 * 119.99882 * 355.29001 * 13 12 10 34 34 H 1.08000 * 119.90439 * 180.27035 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1100 0.7365 -1.2156 5 7 3.1800 2.0971 -1.2075 6 6 2.9014 2.7953 -0.0507 7 6 3.5578 2.4594 1.1406 8 6 3.2898 3.1422 2.2843 9 6 2.3438 4.1969 2.2696 10 6 2.0619 4.9036 3.4403 11 1 1.8841 5.9679 3.3990 12 6 2.0073 4.2009 4.7251 13 7 1.8853 2.9117 4.7534 14 14 2.1136 5.1644 6.3218 15 1 2.0349 4.2276 7.4714 16 1 3.4019 5.9013 6.3704 17 1 0.9878 6.1303 6.3930 18 6 1.6814 4.5266 1.0616 19 7 0.6868 5.6225 1.0357 20 8 0.0277 5.8875 -0.0734 21 8 0.4609 6.3326 2.1215 22 6 1.9657 3.8371 -0.0745 23 6 3.4976 0.0343 -2.3335 24 6 3.4235 -1.3957 -2.3422 25 7 3.3643 -2.5314 -2.3487 26 6 3.9742 0.7336 -3.4888 27 7 4.3537 1.2866 -4.4049 28 1 2.9718 -1.0266 -0.0212 29 1 2.9711 0.4962 0.9004 30 1 3.4257 2.5750 -2.0151 31 1 4.2788 1.6555 1.1498 32 1 3.7963 2.8817 3.2019 33 1 1.7615 2.4180 3.9277 34 1 1.4648 4.0900 -0.9973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:53 Heat of formation + Delta-G solvation = 119.950689 kcal Electronic energy + Delta-G solvation = -25378.762449 eV Core-core repulsion = 21473.671789 eV Total energy + Delta-G solvation = -3905.090660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.080 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65299 -39.95567 -38.40591 -37.78452 -37.53056 -37.12330 -36.08030 -34.54978 -33.66112 -32.54619 -31.27574 -30.57466 -27.94408 -26.30147 -24.10540 -23.38596 -22.33565 -21.22795 -20.73383 -19.63106 -18.90278 -18.65598 -18.22673 -17.13837 -16.62990 -16.54651 -16.28876 -15.90881 -15.60252 -15.53924 -15.35804 -14.92939 -14.81618 -14.63785 -14.26720 -14.11191 -13.95670 -13.82465 -13.67892 -13.53711 -13.35282 -13.21784 -12.97634 -12.82237 -12.69845 -12.33925 -12.18657 -11.84163 -11.53132 -11.38096 -11.26103 -11.14906 -10.37780 -10.25409 -9.79725 -9.04674 -7.16315 -1.17441 -0.34405 0.36583 0.72698 1.14447 1.36230 1.48024 1.49188 1.53341 1.64921 1.71394 1.81427 1.85266 2.07431 2.10297 2.23099 2.60899 2.72611 2.84812 2.96548 3.10020 3.72426 3.75808 3.99553 4.07282 4.17563 4.33987 4.38617 4.53334 4.65281 4.66486 4.79022 5.10085 5.14424 5.32025 5.39530 5.63552 5.77322 5.92987 5.97645 6.18422 6.43072 6.48491 6.66415 6.67223 7.27210 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003899 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.891839 B = 7180.465664 C = 8002.146004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.227 3.773 3 C -0.012 4.012 4 C 0.338 3.662 5 N -0.598 5.598 6 C 0.050 3.950 7 C -0.084 4.084 8 C -0.120 4.120 9 C 0.008 3.992 10 C -0.306 4.306 11 H 0.114 0.886 12 C -0.002 4.002 13 N -0.683 5.683 14 Si 1.115 2.885 15 H -0.249 1.249 16 H -0.239 1.239 17 H -0.272 1.272 18 C -0.076 4.076 19 N 0.027 4.973 20 O -0.446 6.446 21 O -0.356 6.356 22 C -0.054 4.054 23 C -0.141 4.141 24 C 0.305 3.695 25 N -0.458 5.458 26 C 0.289 3.711 27 N -0.466 5.466 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.423 0.577 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.312 0.688 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -8.954 4.303 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.091 4.091 3 C -0.051 4.051 4 C 0.211 3.789 5 N -0.209 5.209 6 C -0.048 4.048 7 C -0.103 4.103 8 C -0.140 4.140 9 C 0.003 3.997 10 C -0.335 4.335 11 H 0.132 0.868 12 C -0.233 4.233 13 N -0.302 5.302 14 Si 0.929 3.071 15 H -0.173 1.173 16 H -0.163 1.163 17 H -0.197 1.197 18 C -0.185 4.185 19 N 0.413 4.587 20 O -0.566 6.566 21 O -0.495 6.495 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.009 4.009 25 N -0.136 5.136 26 C -0.024 4.024 27 N -0.144 5.144 28 H 0.195 0.805 29 H 0.192 0.808 30 H 0.263 0.737 31 H 0.210 0.790 32 H 0.171 0.829 33 H 0.128 0.872 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.968 -9.964 4.423 15.464 hybrid contribution -0.742 1.550 -2.504 3.037 sum 10.225 -8.414 1.919 13.380 Atomic orbital electron populations 1.81335 1.14627 1.09485 1.08643 1.28755 0.94794 0.92553 0.92994 1.19132 0.81191 1.06664 0.98108 1.20049 0.83613 0.82961 0.92249 1.41130 1.63718 1.03327 1.12723 1.16883 1.01680 0.98268 0.87960 1.21214 0.99108 1.00420 0.89605 1.21239 0.97234 0.95334 1.00163 1.17785 0.94942 0.96175 0.90799 1.24081 1.16342 1.00220 0.92869 0.86821 1.30574 0.91026 0.95654 1.06093 1.70102 1.15559 1.08035 1.36538 0.83008 0.80320 0.74977 0.68835 1.17262 1.16253 1.19695 1.20033 1.01752 0.97671 0.99082 1.49774 1.04435 1.03807 1.00636 1.96026 1.59220 1.82558 1.18760 1.95947 1.80516 1.52618 1.20433 1.20198 0.95052 0.95747 0.96523 1.11886 1.29061 0.83581 0.91568 1.24378 0.92035 0.90809 0.93698 1.81429 1.12775 1.12036 1.07384 1.24917 0.91904 0.93318 0.92273 1.81336 1.13545 1.08861 1.10671 0.80490 0.80767 0.73735 0.78971 0.82854 0.87210 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.09 18.54 20.00 0.37 -13.72 16 2 C 0.23 4.81 15.31 89.44 1.37 6.18 16 3 C -0.01 -0.11 4.94 28.04 0.14 0.02 16 4 C 0.34 4.19 5.81 41.72 0.24 4.43 16 5 N -0.60 -9.55 5.16 -173.51 -0.90 -10.45 16 6 C 0.05 1.12 5.59 39.07 0.22 1.34 16 7 C -0.08 -1.48 7.41 22.17 0.16 -1.32 16 8 C -0.12 -3.03 7.88 22.57 0.18 -2.85 16 9 C 0.01 0.31 5.15 -21.25 -0.11 0.20 16 10 C -0.31 -12.08 7.82 24.77 0.19 -11.88 16 11 H 0.11 5.09 5.82 -2.91 -0.02 5.08 16 12 C 0.00 -0.08 5.23 87.20 0.46 0.38 16 13 N -0.68 -22.13 12.71 23.21 0.29 -21.83 16 14 Si 1.12 28.27 30.06 68.60 2.06 30.34 16 15 H -0.25 -5.87 7.11 99.48 0.71 -5.17 16 16 H -0.24 -5.31 7.11 99.48 0.71 -4.61 16 17 H -0.27 -7.61 7.11 99.48 0.71 -6.90 16 18 C -0.08 -3.30 6.90 36.68 0.25 -3.04 16 19 N 0.03 1.51 4.98 -45.75 -0.23 1.28 16 20 O -0.45 -26.64 19.13 3.51 0.07 -26.57 16 21 O -0.36 -20.50 16.21 3.52 0.06 -20.45 16 22 C -0.05 -1.90 9.44 22.17 0.21 -1.69 16 23 C -0.14 -2.01 5.78 -20.94 -0.12 -2.13 16 24 C 0.30 5.17 13.61 88.32 1.20 6.37 16 25 N -0.46 -9.89 18.55 19.02 0.35 -9.54 16 26 C 0.29 5.60 13.95 88.34 1.23 6.84 16 27 N -0.47 -11.55 18.53 19.00 0.35 -11.19 16 28 H 0.18 0.62 6.76 -2.39 -0.02 0.61 16 29 H 0.18 0.98 4.41 -2.39 -0.01 0.97 16 30 H 0.42 6.64 7.53 -92.71 -0.70 5.94 16 31 H 0.19 1.10 7.00 -2.91 -0.02 1.08 16 32 H 0.15 3.31 7.17 -2.91 -0.02 3.29 16 33 H 0.31 9.97 6.66 -92.70 -0.62 9.36 16 34 H 0.12 4.40 7.54 -2.91 -0.02 4.37 16 Total: -1.00 -74.03 332.90 8.76 -65.27 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.70 Total: 14.02 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.63 Total: 2.85 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: 0.25 Total: -65.45 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: 0.12 Total: -47.02 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: 2.06 Total: 30.34 kcal Total: -74.03 8.76 -65.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.221 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds