Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47350 * 2 1 4 4 C 1.34231 * 117.00242 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99551 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99759 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46869 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47065 * 55.94002 * 7 6 4 9 9 C 1.50700 * 109.47099 * 175.94178 * 7 6 4 10 10 H 1.08007 * 119.99770 * 238.79055 * 9 7 6 11 11 C 1.37870 * 120.00217 * 58.78724 * 9 7 6 12 12 N 1.31516 * 120.00403 * 182.12864 * 11 9 7 13 13 Si 1.86803 * 120.00151 * 2.13488 * 11 9 7 14 14 H 1.48505 * 109.46784 * 269.99553 * 13 11 9 15 15 H 1.48499 * 109.47252 * 29.99304 * 13 11 9 16 16 H 1.48495 * 109.47231 * 149.99918 * 13 11 9 17 17 O 1.42905 * 109.47114 * 295.93751 * 7 6 4 18 18 C 1.35706 * 116.99715 * 155.70636 * 17 7 6 19 19 C 1.38587 * 120.14401 * 5.49962 * 18 17 7 20 20 C 1.38246 * 120.07986 * 179.97438 * 19 18 17 21 21 Cl 1.73607 * 119.81420 * 179.97438 * 20 19 18 22 22 C 1.38659 * 120.36730 * 359.97438 * 20 19 18 23 23 C 1.37777 * 120.27595 * 359.97438 * 22 20 19 24 24 C 1.39739 * 119.91878 * 359.79011 * 23 22 20 25 25 C 1.43202 * 120.18211 * 180.24790 * 24 23 22 26 26 N 6.39157 * 135.62742 * 80.34027 * 2 1 3 27 27 H 1.09000 * 109.46881 * 299.99817 * 1 2 3 28 28 H 1.08998 * 109.47306 * 60.00218 * 1 2 3 29 29 H 1.09009 * 109.46640 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47361 * 239.99956 * 2 1 3 31 31 H 1.09000 * 109.47353 * 120.00567 * 2 1 3 32 32 H 1.09000 * 109.47224 * 60.00394 * 6 4 3 33 33 H 1.09001 * 109.47449 * 299.99727 * 6 4 3 34 34 H 0.97009 * 119.99760 * 354.98044 * 12 11 9 35 35 H 1.07999 * 119.96207 * 359.94917 * 19 18 17 36 36 H 1.07992 * 119.86492 * 180.02562 * 22 20 19 37 37 H 1.08001 * 120.03949 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7813 2.2639 -0.8517 9 6 6.0244 4.2463 -0.1001 10 1 6.6757 4.5030 -0.9227 11 6 5.7199 5.1895 0.8583 12 7 6.1884 6.4135 0.7487 13 14 4.6419 4.7289 2.3127 14 1 3.2181 4.9775 1.9718 15 1 4.8305 3.2912 2.6329 16 1 5.0201 5.5520 3.4894 17 8 5.8936 2.2433 1.2112 18 6 7.1080 1.6382 1.1852 19 6 7.9076 1.7307 0.0571 20 6 9.1447 1.1142 0.0322 21 17 10.1405 1.2338 -1.3849 22 6 9.5947 0.4008 1.1328 23 6 8.8124 0.3002 2.2625 24 6 7.5621 0.9228 2.3022 25 6 6.7466 0.8264 3.4754 26 7 6.0988 0.7500 4.4064 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5852 3.4689 0.8905 33 1 3.5844 3.4700 -0.8895 34 1 6.8066 6.6340 0.0343 35 1 7.5637 2.2846 -0.8039 36 1 10.5626 -0.0772 1.1047 37 1 9.1668 -0.2561 3.1177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228083881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = -75.689998 kcal Electronic energy + Delta-G solvation = -25098.061216 eV Core-core repulsion = 21253.301682 eV Total energy + Delta-G solvation = -3844.759534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32295 -39.69602 -37.54754 -36.50896 -36.17742 -35.64141 -33.49986 -31.93163 -31.24149 -30.81455 -29.48044 -26.41810 -23.57552 -23.28342 -22.80382 -21.36998 -20.42774 -18.97505 -18.11096 -17.44832 -16.89999 -16.40612 -16.16687 -15.75074 -15.27566 -14.61454 -14.31869 -14.18916 -13.78731 -13.53440 -13.19778 -13.08448 -12.92897 -12.78911 -12.68482 -12.65723 -12.47959 -12.22180 -11.72848 -11.67014 -11.55124 -11.32231 -11.18212 -10.88821 -10.75913 -10.58079 -10.47918 -10.38492 -10.00931 -9.40714 -9.10919 -8.84391 -8.61265 -7.76425 -6.79793 -4.65029 0.95278 1.66493 2.23685 2.59608 2.94996 3.11593 3.18064 3.24197 3.33906 3.53758 3.90211 4.15983 4.23398 4.32477 4.92121 4.93260 4.96176 5.01794 5.08899 5.24448 5.26923 5.44258 5.53755 5.61466 5.73181 5.74553 5.78633 5.87483 5.92259 6.15692 6.20554 6.32715 6.43771 6.48853 6.71214 6.86893 7.30710 7.85087 7.95824 8.06405 8.12358 8.50134 9.17663 10.56452 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005400 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.366837 B = 5183.497471 C = 5851.962298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.503 6.503 6 C -0.109 4.109 7 C 0.184 3.816 8 H 0.058 0.942 9 C -0.625 4.625 10 H 0.074 0.926 11 C 0.053 3.947 12 N -0.879 5.879 13 Si 1.024 2.976 14 H -0.281 1.281 15 H -0.242 1.242 16 H -0.286 1.286 17 O -0.298 6.298 18 C 0.239 3.761 19 C -0.188 4.188 20 C 0.031 3.969 21 Cl -0.072 7.072 22 C -0.175 4.175 23 C -0.024 4.024 24 C -0.092 4.092 25 C 0.278 3.722 26 N -0.437 5.437 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.275 0.725 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -11.556 -3.235 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.300 3.700 5 O -0.390 6.390 6 C -0.146 4.146 7 C 0.130 3.870 8 H 0.076 0.924 9 C -0.661 4.661 10 H 0.092 0.908 11 C -0.157 4.157 12 N -0.510 5.510 13 Si 0.852 3.148 14 H -0.209 1.209 15 H -0.167 1.167 16 H -0.212 1.212 17 O -0.209 6.209 18 C 0.186 3.814 19 C -0.208 4.208 20 C 0.004 3.996 21 Cl -0.044 7.044 22 C -0.194 4.194 23 C -0.045 4.045 24 C -0.096 4.096 25 C -0.037 4.037 26 N -0.114 5.114 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.233 -11.314 -0.459 11.541 hybrid contribution 1.131 -0.445 -2.120 2.444 sum -1.102 -11.759 -2.579 12.089 Atomic orbital electron populations 1.21794 0.92976 1.02599 1.03468 1.22942 0.95108 0.81080 1.02354 1.86552 1.25444 1.31703 1.84469 1.24383 0.80027 0.93625 0.71932 1.90626 1.60222 1.43143 1.45001 1.22165 0.96549 0.89644 1.06286 1.20401 0.88551 0.94793 0.83236 0.92397 1.22285 1.35353 0.94641 1.13831 0.90767 1.25819 0.97388 0.92663 0.99828 1.70818 1.27747 1.18709 1.33710 0.84480 0.75530 0.78116 0.76628 1.20895 1.16677 1.21241 1.86504 1.29263 1.64810 1.40342 1.18739 0.86087 0.85982 0.90586 1.21220 0.94011 1.04920 1.00634 1.20892 0.92048 0.98166 0.88535 1.98360 1.69200 1.96963 1.39829 1.20607 1.01708 1.04536 0.92527 1.20743 0.90606 0.95555 0.97592 1.15457 0.95652 1.08884 0.89637 1.25301 0.92921 0.92989 0.92463 1.81146 1.08688 1.09719 1.11810 0.91523 0.91546 0.90571 0.91489 0.91505 0.88374 0.85673 0.91456 0.82755 0.84598 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -6.03 10.22 -39.26 -0.40 -6.43 16 4 C 0.46 8.60 7.83 36.00 0.28 8.88 16 5 O -0.50 -10.33 15.15 -24.27 -0.37 -10.70 16 6 C -0.11 -2.14 5.00 -27.88 -0.14 -2.28 16 7 C 0.18 3.94 1.33 -27.88 -0.04 3.90 16 8 H 0.06 1.19 6.20 -51.93 -0.32 0.86 16 9 C -0.63 -15.22 8.41 -34.44 -0.29 -15.51 16 10 H 0.07 1.91 8.04 -52.48 -0.42 1.49 16 11 C 0.05 1.40 5.44 -17.82 -0.10 1.30 16 12 N -0.88 -24.62 13.70 55.43 0.76 -23.87 16 13 Si 1.02 24.14 24.30 -169.99 -4.13 20.01 16 14 H -0.28 -6.15 6.85 56.52 0.39 -5.76 16 15 H -0.24 -5.65 5.30 56.52 0.30 -5.35 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 O -0.30 -6.57 5.25 -34.16 -0.18 -6.75 16 18 C 0.24 4.72 6.59 -38.72 -0.26 4.47 16 19 C -0.19 -3.41 8.46 -39.45 -0.33 -3.74 16 20 C 0.03 0.48 6.32 -39.42 -0.25 0.23 16 21 Cl -0.07 -1.00 28.94 -51.86 -1.50 -2.50 16 22 C -0.17 -2.29 9.80 -39.59 -0.39 -2.68 16 23 C -0.02 -0.33 9.75 -39.19 -0.38 -0.71 16 24 C -0.09 -1.62 5.75 -106.67 -0.61 -2.23 16 25 C 0.28 5.36 14.87 -22.45 -0.33 5.02 16 26 N -0.44 -9.00 18.54 41.87 0.78 -8.22 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.10 2.02 3.35 -51.93 -0.17 1.84 16 33 H 0.13 2.16 8.14 -51.93 -0.42 1.74 16 34 H 0.27 7.58 8.72 -40.82 -0.36 7.23 16 35 H 0.15 2.92 5.67 -52.49 -0.30 2.62 16 36 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -29.25 338.31 -6.04 -35.29 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.87 Total: 1.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.22 Total: -3.43 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 1.54 Total: -32.09 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.95 Total: -23.88 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.13 Total: 20.01 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.25 -6.04 -35.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228083881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.400 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds