Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47350 * 2 1 4 4 C 1.34231 * 117.00242 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99551 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99759 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46869 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47065 * 55.94002 * 7 6 4 9 9 C 1.50700 * 109.47099 * 175.94178 * 7 6 4 10 10 H 1.08007 * 119.99770 * 238.79055 * 9 7 6 11 11 C 1.37870 * 120.00217 * 58.78724 * 9 7 6 12 12 N 1.31516 * 120.00403 * 182.12864 * 11 9 7 13 13 Si 1.86803 * 120.00151 * 2.13488 * 11 9 7 14 14 H 1.48505 * 109.46784 * 269.99553 * 13 11 9 15 15 H 1.48499 * 109.47252 * 29.99304 * 13 11 9 16 16 H 1.48495 * 109.47231 * 149.99918 * 13 11 9 17 17 O 1.42905 * 109.47114 * 295.93751 * 7 6 4 18 18 C 1.35706 * 116.99715 * 155.70636 * 17 7 6 19 19 C 1.38587 * 120.14401 * 5.49962 * 18 17 7 20 20 C 1.38246 * 120.07986 * 179.97438 * 19 18 17 21 21 Cl 1.73607 * 119.81420 * 179.97438 * 20 19 18 22 22 C 1.38659 * 120.36730 * 359.97438 * 20 19 18 23 23 C 1.37777 * 120.27595 * 359.97438 * 22 20 19 24 24 C 1.39739 * 119.91878 * 359.79011 * 23 22 20 25 25 C 1.43202 * 120.18211 * 180.24790 * 24 23 22 26 26 N 6.39157 * 135.62742 * 80.34027 * 2 1 3 27 27 H 1.09000 * 109.46881 * 299.99817 * 1 2 3 28 28 H 1.08998 * 109.47306 * 60.00218 * 1 2 3 29 29 H 1.09009 * 109.46640 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47361 * 239.99956 * 2 1 3 31 31 H 1.09000 * 109.47353 * 120.00567 * 2 1 3 32 32 H 1.09000 * 109.47224 * 60.00394 * 6 4 3 33 33 H 1.09001 * 109.47449 * 299.99727 * 6 4 3 34 34 H 0.97009 * 119.99760 * 354.98044 * 12 11 9 35 35 H 1.07999 * 119.96207 * 359.94917 * 19 18 17 36 36 H 1.07992 * 119.86492 * 180.02562 * 22 20 19 37 37 H 1.08001 * 120.03949 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7813 2.2639 -0.8517 9 6 6.0244 4.2463 -0.1001 10 1 6.6757 4.5030 -0.9227 11 6 5.7199 5.1895 0.8583 12 7 6.1884 6.4135 0.7487 13 14 4.6419 4.7289 2.3127 14 1 3.2181 4.9775 1.9718 15 1 4.8305 3.2912 2.6329 16 1 5.0201 5.5520 3.4894 17 8 5.8936 2.2433 1.2112 18 6 7.1080 1.6382 1.1852 19 6 7.9076 1.7307 0.0571 20 6 9.1447 1.1142 0.0322 21 17 10.1405 1.2338 -1.3849 22 6 9.5947 0.4008 1.1328 23 6 8.8124 0.3002 2.2625 24 6 7.5621 0.9228 2.3022 25 6 6.7466 0.8264 3.4754 26 7 6.0988 0.7500 4.4064 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5852 3.4689 0.8905 33 1 3.5844 3.4700 -0.8895 34 1 6.8066 6.6340 0.0343 35 1 7.5637 2.2846 -0.8039 36 1 10.5626 -0.0772 1.1047 37 1 9.1668 -0.2561 3.1177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228083881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = -91.281180 kcal Electronic energy + Delta-G solvation = -25098.737300 eV Core-core repulsion = 21253.301682 eV Total energy + Delta-G solvation = -3845.435618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78028 -41.08190 -38.96844 -37.81215 -37.59375 -37.02239 -35.33018 -33.40289 -32.48642 -32.11352 -30.82324 -28.12326 -24.92717 -24.66593 -24.03727 -22.82239 -21.94564 -20.44600 -19.76063 -18.91318 -18.47856 -17.71278 -17.60844 -17.14418 -16.56646 -16.13860 -15.72071 -15.66097 -15.21369 -14.89606 -14.76165 -14.63519 -14.37731 -14.22689 -14.01567 -13.94008 -13.68091 -13.59698 -13.08082 -12.90727 -12.77775 -12.74083 -12.56212 -12.49537 -12.28295 -11.95993 -11.93420 -11.55788 -11.53416 -11.12780 -11.00097 -10.82397 -9.89488 -9.20416 -8.82051 -6.67869 -0.35881 0.40240 1.03026 1.11216 1.29320 1.44443 1.61221 1.63554 1.68889 1.84131 2.26888 2.39012 2.79300 2.93382 3.02557 3.69263 3.82884 3.95540 3.99480 4.04851 4.07470 4.14005 4.18237 4.31610 4.39027 4.60632 4.65733 4.72550 4.84319 4.90225 5.01755 5.10914 5.15999 5.23965 5.38075 5.47891 5.60021 5.88620 6.25444 6.44877 6.61149 6.69956 7.19734 8.51288 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005400 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.366837 B = 5183.497471 C = 5851.962298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.524 6.524 6 C -0.113 4.113 7 C 0.192 3.808 8 H 0.061 0.939 9 C -0.609 4.609 10 H 0.051 0.949 11 C 0.020 3.980 12 N -0.918 5.918 13 Si 1.050 2.950 14 H -0.254 1.254 15 H -0.242 1.242 16 H -0.303 1.303 17 O -0.317 6.317 18 C 0.203 3.797 19 C -0.206 4.206 20 C 0.031 3.969 21 Cl -0.057 7.057 22 C -0.154 4.154 23 C -0.004 4.004 24 C -0.105 4.105 25 C 0.287 3.713 26 N -0.468 5.468 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.265 0.735 35 H 0.137 0.863 36 H 0.179 0.821 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -14.008 -3.130 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.412 6.412 6 C -0.150 4.150 7 C 0.137 3.863 8 H 0.079 0.921 9 C -0.646 4.646 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.552 5.552 13 Si 0.877 3.123 14 H -0.180 1.180 15 H -0.166 1.166 16 H -0.231 1.231 17 O -0.230 6.230 18 C 0.152 3.848 19 C -0.226 4.226 20 C 0.003 3.997 21 Cl -0.028 7.028 22 C -0.172 4.172 23 C -0.024 4.024 24 C -0.110 4.110 25 C -0.026 4.026 26 N -0.145 5.145 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.196 0.804 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.899 -13.785 -0.373 13.920 hybrid contribution 1.166 0.138 -2.246 2.535 sum -0.732 -13.646 -2.619 13.915 Atomic orbital electron populations 1.21828 0.90010 1.04506 1.03768 1.23329 0.97403 0.79251 1.02413 1.86530 1.23825 1.33956 1.83858 1.24021 0.80768 0.92826 0.71543 1.90613 1.60915 1.43610 1.46103 1.22064 0.95399 0.90686 1.06855 1.20189 0.89592 0.92876 0.83628 0.92114 1.22310 1.33931 0.96161 1.12214 0.93108 1.26556 0.98056 0.92471 1.01368 1.70891 1.29801 1.20047 1.34464 0.84143 0.76369 0.77493 0.74337 1.17967 1.16638 1.23050 1.86398 1.30764 1.65932 1.39858 1.19076 0.85864 0.87717 0.92156 1.21090 0.95436 1.06221 0.99835 1.21088 0.91244 0.97558 0.89817 1.98369 1.68358 1.96857 1.39226 1.21105 1.02805 1.02448 0.90865 1.21246 0.88431 0.93737 0.98955 1.15748 0.97082 1.09749 0.88415 1.25614 0.92491 0.92127 0.92392 1.81142 1.09465 1.10943 1.12959 0.91585 0.90870 0.87827 0.90869 0.92110 0.89094 0.83752 0.92492 0.84575 0.80364 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.22 6.19 71.98 0.45 1.67 16 3 O -0.36 -11.64 10.22 -51.43 -0.53 -12.17 16 4 C 0.46 17.24 7.83 71.23 0.56 17.80 16 5 O -0.52 -21.38 15.15 27.25 0.41 -20.97 16 6 C -0.11 -4.40 5.00 29.85 0.15 -4.25 16 7 C 0.19 8.32 1.33 29.85 0.04 8.36 16 8 H 0.06 2.56 6.20 -2.39 -0.01 2.54 16 9 C -0.61 -30.58 8.41 25.60 0.22 -30.36 16 10 H 0.05 2.74 8.04 -2.91 -0.02 2.71 16 11 C 0.02 1.06 5.44 84.65 0.46 1.52 16 12 N -0.92 -53.23 13.70 21.44 0.29 -52.93 16 13 Si 1.05 49.66 24.30 68.60 1.67 51.33 16 14 H -0.25 -10.72 6.85 99.48 0.68 -10.04 16 15 H -0.24 -11.35 5.30 99.48 0.53 -10.82 16 16 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 17 O -0.32 -14.14 5.25 -75.60 -0.40 -14.53 16 18 C 0.20 8.00 6.59 22.83 0.15 8.15 16 19 C -0.21 -7.43 8.46 22.36 0.19 -7.24 16 20 C 0.03 0.87 6.32 22.37 0.14 1.02 16 21 Cl -0.06 -1.46 28.94 -2.72 -0.08 -1.54 16 22 C -0.15 -3.39 9.80 22.26 0.22 -3.17 16 23 C 0.00 -0.08 9.75 22.52 0.22 0.14 16 24 C -0.11 -3.56 5.75 -21.19 -0.12 -3.68 16 25 C 0.29 10.82 14.87 88.32 1.31 12.13 16 26 N -0.47 -19.00 18.54 19.01 0.35 -18.65 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.09 3.70 3.35 -2.39 -0.01 3.69 16 33 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 34 H 0.27 15.32 8.72 -92.70 -0.81 14.51 16 35 H 0.14 5.32 5.67 -2.91 -0.02 5.30 16 36 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -65.99 338.31 7.32 -58.67 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.88 Total: 10.42 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.72 Total: 0.39 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: 0.65 Total: -71.58 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.51 Total: -47.68 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.67 Total: 51.33 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -65.99 7.32 -58.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228083881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.612 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds