Wall clock time and date at job start Tue Mar 31 2020 13:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34843 * 117.00174 * 2 1 4 4 O 1.21599 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.46734 * 120.00182 * 180.02562 * 3 2 1 6 6 C 1.36428 * 126.77156 * 359.96349 * 5 3 2 7 7 N 1.35503 * 109.75548 * 180.02562 * 6 5 3 8 8 H 0.97002 * 124.77732 * 180.02562 * 7 6 5 9 9 C 1.37958 * 110.43545 * 359.97438 * 7 6 5 10 10 C 1.39104 * 133.19177 * 179.97438 * 9 7 6 11 11 C 1.38254 * 119.74656 * 180.02562 * 10 9 7 12 12 O 1.35942 * 119.74912 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99911 * 5.68119 * 12 11 10 14 14 H 1.09000 * 109.47099 * 21.35497 * 13 12 11 15 15 C 1.50696 * 109.46865 * 141.34947 * 13 12 11 16 16 H 1.07999 * 120.00097 * 95.00108 * 15 13 12 17 17 C 1.37878 * 120.00124 * 274.99775 * 15 13 12 18 18 N 1.31508 * 120.00062 * 7.56648 * 17 15 13 19 19 Si 1.86801 * 120.00053 * 187.56729 * 17 15 13 20 20 H 1.48496 * 109.47309 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47100 * 300.00288 * 19 17 15 22 22 H 1.48505 * 109.47184 * 59.99964 * 19 17 15 23 23 C 1.52996 * 109.47280 * 261.35305 * 13 12 11 24 24 Cl 1.80301 * 109.47180 * 65.50279 * 23 13 12 25 25 C 1.39186 * 120.50293 * 0.27789 * 11 10 9 26 26 C 1.36706 * 120.38552 * 359.44272 * 25 11 10 27 27 C 1.39265 * 119.86503 * 0.55048 * 26 25 11 28 28 H 1.09007 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47087 * 299.99330 * 1 2 3 30 30 H 1.08994 * 109.47353 * 60.00052 * 1 2 3 31 31 H 1.07997 * 125.12369 * 0.03411 * 6 5 3 32 32 H 1.08001 * 120.12783 * 0.05203 * 10 9 7 33 33 H 0.97003 * 120.00303 * 355.30864 * 18 17 15 34 34 H 1.09000 * 109.47364 * 185.50480 * 23 13 12 35 35 H 1.08999 * 109.46869 * 305.50218 * 23 13 12 36 36 H 1.08004 * 119.80567 * 179.72314 * 25 11 10 37 37 H 1.08000 * 120.06751 * 180.27478 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2213 0.0005 5 6 3.5295 1.2782 -0.0006 6 6 4.4023 0.2296 -0.0004 7 7 5.6755 0.6935 -0.0005 8 1 6.4681 0.1342 -0.0008 9 6 5.6856 2.0730 -0.0013 10 6 6.7067 3.0176 -0.0013 11 6 6.3951 4.3646 -0.0017 12 8 7.3929 5.2878 -0.0011 13 6 8.7296 4.7983 -0.1261 14 1 8.7123 3.8045 -0.5734 15 6 9.5257 5.7300 -1.0031 16 1 10.1271 6.5088 -0.5579 17 6 9.4864 5.5883 -2.3741 18 7 8.6435 4.7415 -2.9236 19 14 10.6303 6.5990 -3.4508 20 1 10.3919 6.2637 -4.8776 21 1 10.3678 8.0442 -3.2318 22 1 12.0402 6.2932 -3.0988 23 6 9.3769 4.7234 1.2582 24 17 8.5217 3.4884 2.2554 25 6 5.0675 4.7826 0.0037 26 6 4.0537 3.8655 -0.0021 27 6 4.3497 2.5046 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.1209 -0.8130 -0.0004 32 1 7.7389 2.7001 -0.0013 33 1 8.0978 4.1677 -2.3633 34 1 10.4254 4.4440 1.1544 35 1 9.3065 5.6959 1.7453 36 1 4.8369 5.8377 0.0078 37 1 3.0254 4.1956 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233533370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:51 Heat of formation + Delta-G solvation = -80.173782 kcal Electronic energy + Delta-G solvation = -24627.394706 eV Core-core repulsion = 20782.440741 eV Total energy + Delta-G solvation = -3844.953965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21153 -39.80461 -38.62713 -36.20782 -35.76939 -35.10249 -33.23764 -31.66406 -30.20997 -29.30652 -28.25445 -27.13280 -24.83316 -23.31421 -23.21924 -21.53552 -20.78397 -19.83825 -18.24375 -17.55550 -17.09345 -16.43597 -16.22611 -16.05973 -15.57327 -14.82897 -14.49360 -14.17718 -13.90594 -13.79958 -13.76756 -13.51533 -13.08125 -13.05640 -12.87369 -12.20859 -12.17017 -11.96044 -11.67553 -11.40086 -11.00550 -10.86805 -10.76800 -10.54632 -10.49433 -10.28513 -10.25949 -9.88135 -9.52665 -9.17229 -8.85852 -8.74984 -7.76226 -6.99097 -6.79249 -4.61461 1.20825 2.08640 2.20016 2.77266 2.87662 3.21102 3.26684 3.29945 3.39167 3.48327 4.18274 4.34734 4.43310 4.81941 5.02159 5.04198 5.10797 5.11537 5.17899 5.37713 5.57394 5.65974 5.68944 5.72189 5.82165 5.95764 6.03700 6.10571 6.31075 6.48515 6.52052 6.73728 6.84388 6.99337 7.06972 7.40668 7.53495 7.54399 7.99638 8.00051 8.38573 8.57365 9.18067 10.60000 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.003595 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.510341 B = 7787.101193 C = 8492.379396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.539 3.461 4 O -0.516 6.516 5 C -0.220 4.220 6 C 0.124 3.876 7 N -0.576 5.576 8 H 0.419 0.581 9 C 0.126 3.874 10 C -0.218 4.218 11 C 0.180 3.820 12 O -0.309 6.309 13 C 0.176 3.824 14 H 0.054 0.946 15 C -0.602 4.602 16 H 0.065 0.935 17 C 0.035 3.965 18 N -0.873 5.873 19 Si 1.075 2.925 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.029 4.029 24 Cl -0.218 7.218 25 C -0.164 4.164 26 C -0.043 4.043 27 C -0.110 4.110 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.181 0.819 32 H 0.133 0.867 33 H 0.276 0.724 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -10.316 5.764 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.385 3.615 4 O -0.405 6.405 5 C -0.230 4.230 6 C -0.010 4.010 7 N -0.177 5.177 8 H 0.256 0.744 9 C 0.022 3.978 10 C -0.240 4.240 11 C 0.131 3.869 12 O -0.222 6.222 13 C 0.123 3.877 14 H 0.072 0.928 15 C -0.638 4.638 16 H 0.083 0.917 17 C -0.175 4.175 18 N -0.506 5.506 19 Si 0.901 3.099 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.092 4.092 24 Cl -0.192 7.192 25 C -0.183 4.183 26 C -0.061 4.061 27 C -0.113 4.113 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.198 0.802 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.811 -9.615 4.299 12.543 hybrid contribution -0.195 -0.854 1.709 1.921 sum -7.006 -10.468 6.008 13.956 Atomic orbital electron populations 1.23177 0.76637 1.03186 1.02486 1.86548 1.23067 1.33341 1.85263 1.20119 0.87828 0.81036 0.72482 1.90819 1.66591 1.35898 1.47170 1.18882 0.88261 0.93279 1.22531 1.22074 0.82699 0.98779 0.97450 1.41582 1.07625 1.05807 1.62690 0.74372 1.17861 0.94676 0.82287 1.02997 1.20115 0.98052 0.91142 1.14645 1.18840 0.89533 0.87854 0.90633 1.86681 1.16219 1.34418 1.84897 1.20772 0.78122 0.98636 0.90195 0.92826 1.21854 1.28592 1.20155 0.93190 0.91671 1.26167 0.97047 0.97849 0.96424 1.70776 1.19636 1.20218 1.39962 0.83448 0.74900 0.75511 0.76019 1.20321 1.20849 1.20860 1.25258 0.98091 0.92127 0.93679 1.98674 1.82125 1.62839 1.75572 1.20161 0.89926 1.00137 1.08105 1.20039 0.99040 0.90182 0.96880 1.18387 0.90395 0.92266 1.10226 0.88427 0.92083 0.92041 0.80164 0.84990 0.91228 0.88424 0.89312 0.85461 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.36 -4.56 10.39 -40.88 -0.42 -4.98 16 3 C 0.54 8.46 7.93 34.16 0.27 8.73 16 4 O -0.52 -9.37 15.94 -19.34 -0.31 -9.68 16 5 C -0.22 -3.50 6.27 -103.33 -0.65 -4.15 16 6 C 0.12 1.52 11.62 -16.58 -0.19 1.33 16 7 N -0.58 -7.69 5.99 -10.47 -0.06 -7.75 16 8 H 0.42 4.24 8.96 -40.82 -0.37 3.87 16 9 C 0.13 2.26 7.25 -83.98 -0.61 1.65 16 10 C -0.22 -4.36 7.24 -39.25 -0.28 -4.65 16 11 C 0.18 3.93 6.24 -39.22 -0.24 3.69 16 12 O -0.31 -7.41 9.69 -19.56 -0.19 -7.60 16 13 C 0.18 4.07 1.66 -27.89 -0.05 4.02 16 14 H 0.05 1.30 4.34 -51.93 -0.23 1.07 16 15 C -0.60 -15.36 8.68 -34.44 -0.30 -15.66 16 16 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 17 C 0.04 0.92 5.44 -17.82 -0.10 0.83 16 18 N -0.87 -24.52 13.63 55.43 0.76 -23.76 16 19 Si 1.08 22.94 29.91 -169.99 -5.08 17.86 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.03 -0.56 6.31 37.16 0.23 -0.32 16 24 Cl -0.22 -3.94 25.73 -51.86 -1.33 -5.27 16 25 C -0.16 -3.31 9.91 -39.78 -0.39 -3.70 16 26 C -0.04 -0.81 9.80 -39.75 -0.39 -1.20 16 27 C -0.11 -2.04 6.27 -104.91 -0.66 -2.69 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.13 2.65 4.78 -52.49 -0.25 2.40 16 33 H 0.28 7.78 6.84 -40.82 -0.28 7.50 16 34 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 37 H 0.13 2.33 7.44 -52.49 -0.39 1.94 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -31.62 334.80 -7.57 -39.19 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -3.68 Total: 7.66 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.29 Total: -10.71 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.69 Total: -31.51 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.92 Total: -22.26 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.08 Total: 17.86 kcal Atomic # 17 Polarization: -3.94 SS G_CDS: -1.33 Total: -5.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.62 -7.57 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233533370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.981 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds