Wall clock time and date at job start Tue Mar 31 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34843 * 117.00174 * 2 1 4 4 O 1.21599 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.46734 * 120.00182 * 180.02562 * 3 2 1 6 6 C 1.36428 * 126.77156 * 359.96349 * 5 3 2 7 7 N 1.35503 * 109.75548 * 180.02562 * 6 5 3 8 8 H 0.97002 * 124.77732 * 180.02562 * 7 6 5 9 9 C 1.37958 * 110.43545 * 359.97438 * 7 6 5 10 10 C 1.39104 * 133.19177 * 179.97438 * 9 7 6 11 11 C 1.38254 * 119.74656 * 180.02562 * 10 9 7 12 12 O 1.35942 * 119.74912 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99911 * 5.68119 * 12 11 10 14 14 H 1.09000 * 109.47099 * 21.35497 * 13 12 11 15 15 C 1.50696 * 109.46865 * 141.34947 * 13 12 11 16 16 H 1.07999 * 120.00097 * 95.00108 * 15 13 12 17 17 C 1.37878 * 120.00124 * 274.99775 * 15 13 12 18 18 N 1.31508 * 120.00062 * 7.56648 * 17 15 13 19 19 Si 1.86801 * 120.00053 * 187.56729 * 17 15 13 20 20 H 1.48496 * 109.47309 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47100 * 300.00288 * 19 17 15 22 22 H 1.48505 * 109.47184 * 59.99964 * 19 17 15 23 23 C 1.52996 * 109.47280 * 261.35305 * 13 12 11 24 24 Cl 1.80301 * 109.47180 * 65.50279 * 23 13 12 25 25 C 1.39186 * 120.50293 * 0.27789 * 11 10 9 26 26 C 1.36706 * 120.38552 * 359.44272 * 25 11 10 27 27 C 1.39265 * 119.86503 * 0.55048 * 26 25 11 28 28 H 1.09007 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47087 * 299.99330 * 1 2 3 30 30 H 1.08994 * 109.47353 * 60.00052 * 1 2 3 31 31 H 1.07997 * 125.12369 * 0.03411 * 6 5 3 32 32 H 1.08001 * 120.12783 * 0.05203 * 10 9 7 33 33 H 0.97003 * 120.00303 * 355.30864 * 18 17 15 34 34 H 1.09000 * 109.47364 * 185.50480 * 23 13 12 35 35 H 1.08999 * 109.46869 * 305.50218 * 23 13 12 36 36 H 1.08004 * 119.80567 * 179.72314 * 25 11 10 37 37 H 1.08000 * 120.06751 * 180.27478 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2213 0.0005 5 6 3.5295 1.2782 -0.0006 6 6 4.4023 0.2296 -0.0004 7 7 5.6755 0.6935 -0.0005 8 1 6.4681 0.1342 -0.0008 9 6 5.6856 2.0730 -0.0013 10 6 6.7067 3.0176 -0.0013 11 6 6.3951 4.3646 -0.0017 12 8 7.3929 5.2878 -0.0011 13 6 8.7296 4.7983 -0.1261 14 1 8.7123 3.8045 -0.5734 15 6 9.5257 5.7300 -1.0031 16 1 10.1271 6.5088 -0.5579 17 6 9.4864 5.5883 -2.3741 18 7 8.6435 4.7415 -2.9236 19 14 10.6303 6.5990 -3.4508 20 1 10.3919 6.2637 -4.8776 21 1 10.3678 8.0442 -3.2318 22 1 12.0402 6.2932 -3.0988 23 6 9.3769 4.7234 1.2582 24 17 8.5217 3.4884 2.2554 25 6 5.0675 4.7826 0.0037 26 6 4.0537 3.8655 -0.0021 27 6 4.3497 2.5046 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.1209 -0.8130 -0.0004 32 1 7.7389 2.7001 -0.0013 33 1 8.0978 4.1677 -2.3633 34 1 10.4254 4.4440 1.1544 35 1 9.3065 5.6959 1.7453 36 1 4.8369 5.8377 0.0078 37 1 3.0254 4.1956 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233533370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:50 Heat of formation + Delta-G solvation = -98.922660 kcal Electronic energy + Delta-G solvation = -24628.207718 eV Core-core repulsion = 20782.440741 eV Total energy + Delta-G solvation = -3845.766978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.50889 -40.96037 -40.22572 -37.40217 -37.20102 -36.63095 -35.11890 -32.97247 -31.91895 -30.71218 -29.53103 -28.14496 -26.71945 -24.80704 -24.39163 -23.07996 -22.32256 -21.03445 -19.70296 -19.30455 -18.30505 -17.91765 -17.33870 -17.26232 -16.76544 -16.49224 -16.11889 -15.66345 -15.46257 -15.33030 -15.19786 -14.74231 -14.39794 -14.25208 -14.13597 -13.93450 -13.63149 -13.29946 -13.00501 -12.75801 -12.68462 -12.45986 -12.13128 -11.99534 -11.93768 -11.72274 -11.54623 -11.39731 -11.08151 -10.86418 -10.72817 -10.33818 -9.19358 -8.83413 -8.47250 -6.65685 -0.05139 0.58627 0.84594 1.32843 1.56173 1.61309 1.75171 1.81879 2.06860 2.17643 2.46256 2.61897 2.91309 3.28098 3.66974 3.81144 3.90618 4.04660 4.08137 4.18878 4.29149 4.39196 4.39683 4.41055 4.56637 4.61254 4.66912 4.78734 4.80110 4.86772 5.26818 5.38590 5.42187 5.51835 5.57378 5.68971 5.93398 5.98617 6.34288 6.46603 6.86306 6.89321 7.22349 8.56210 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.003595 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.510341 B = 7787.101193 C = 8492.379396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.542 3.458 4 O -0.553 6.553 5 C -0.260 4.260 6 C 0.175 3.825 7 N -0.561 5.561 8 H 0.438 0.562 9 C 0.114 3.886 10 C -0.212 4.212 11 C 0.147 3.853 12 O -0.333 6.333 13 C 0.176 3.824 14 H 0.039 0.961 15 C -0.617 4.617 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.906 5.906 19 Si 1.119 2.881 20 H -0.285 1.285 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.023 4.023 24 Cl -0.204 7.204 25 C -0.179 4.179 26 C -0.048 4.048 27 C -0.122 4.122 28 H 0.138 0.862 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.239 0.761 32 H 0.128 0.872 33 H 0.263 0.737 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -12.852 6.251 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.390 3.610 4 O -0.445 6.445 5 C -0.269 4.269 6 C 0.040 3.960 7 N -0.164 5.164 8 H 0.279 0.721 9 C 0.009 3.991 10 C -0.234 4.234 11 C 0.100 3.900 12 O -0.247 6.247 13 C 0.122 3.878 14 H 0.057 0.943 15 C -0.653 4.653 16 H 0.086 0.914 17 C -0.214 4.214 18 N -0.541 5.541 19 Si 0.939 3.061 20 H -0.211 1.211 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.085 4.085 24 Cl -0.178 7.178 25 C -0.198 4.198 26 C -0.067 4.067 27 C -0.126 4.126 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.255 0.745 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.798 -12.194 4.817 14.768 hybrid contribution -0.352 -0.265 1.641 1.699 sum -7.150 -12.459 6.457 15.749 Atomic orbital electron populations 1.23530 0.74659 1.05748 1.02257 1.86518 1.24877 1.31264 1.84573 1.20099 0.87771 0.81429 0.71697 1.90802 1.67318 1.37276 1.49143 1.18981 0.89112 0.93034 1.25770 1.22906 0.81011 1.00310 0.91740 1.41649 1.09155 1.04164 1.61426 0.72123 1.17804 0.93852 0.84254 1.03238 1.20059 0.98296 0.91012 1.13987 1.19006 0.89392 0.88383 0.93259 1.86534 1.16675 1.35447 1.86054 1.20679 0.77967 0.97199 0.91909 0.94304 1.22231 1.28910 1.20330 0.93828 0.91398 1.27524 0.97500 0.98042 0.98322 1.70887 1.21364 1.21969 1.39882 0.82916 0.74494 0.74646 0.74024 1.21072 1.19809 1.18230 1.25041 0.98492 0.92911 0.92083 1.98669 1.82047 1.62219 1.74853 1.20244 0.89874 1.00624 1.09050 1.20116 0.98805 0.90815 0.96926 1.18783 0.91645 0.92965 1.09190 0.84401 0.92296 0.92443 0.74485 0.85458 0.92599 0.86781 0.88905 0.85356 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -7.83 10.39 -57.56 -0.60 -8.43 16 3 C 0.54 16.17 7.93 70.04 0.56 16.72 16 4 O -0.55 -20.07 15.94 19.51 0.31 -19.76 16 5 C -0.26 -7.75 6.27 -19.03 -0.12 -7.87 16 6 C 0.18 3.56 11.62 83.70 0.97 4.54 16 7 N -0.56 -13.27 5.99 -187.04 -1.12 -14.39 16 8 H 0.44 7.26 8.96 -92.71 -0.83 6.42 16 9 C 0.11 3.99 7.25 38.91 0.28 4.27 16 10 C -0.21 -8.62 7.24 22.48 0.16 -8.46 16 11 C 0.15 6.68 6.24 22.50 0.14 6.82 16 12 O -0.33 -16.59 9.69 -92.90 -0.90 -17.49 16 13 C 0.18 8.34 1.66 29.85 0.05 8.39 16 14 H 0.04 1.95 4.34 -2.39 -0.01 1.94 16 15 C -0.62 -31.98 8.68 25.60 0.22 -31.75 16 16 H 0.07 3.38 7.82 -2.91 -0.02 3.36 16 17 C -0.01 -0.57 5.44 84.66 0.46 -0.10 16 18 N -0.91 -52.40 13.63 21.45 0.29 -52.11 16 19 Si 1.12 46.27 29.91 68.60 2.05 48.32 16 20 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 C -0.02 -0.87 6.31 71.98 0.45 -0.42 16 24 Cl -0.20 -7.25 25.73 -2.72 -0.07 -7.32 16 25 C -0.18 -7.57 9.91 22.14 0.22 -7.35 16 26 C -0.05 -1.89 9.80 22.16 0.22 -1.67 16 27 C -0.12 -4.51 6.27 -20.05 -0.13 -4.63 16 28 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.24 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.13 5.21 4.78 -2.91 -0.01 5.20 16 33 H 0.26 15.47 6.84 -92.71 -0.63 14.84 16 34 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 37 H 0.13 5.01 7.44 -2.91 -0.02 4.99 16 Total: -1.00 -71.98 334.80 5.10 -66.88 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.44 Total: 24.14 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.69 Total: -19.85 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.83 Total: -66.49 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.19 Total: -45.67 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.05 Total: 48.32 kcal Atomic # 17 Polarization: -7.25 SS G_CDS: -0.07 Total: -7.32 kcal Total: -71.98 5.10 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233533370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.046 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds