Wall clock time and date at job start Tue Mar 31 2020 13:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.53000 * 109.46931 * 119.99759 * 2 1 3 5 5 S 1.81396 * 109.47185 * 295.00030 * 4 2 1 6 6 C 1.81401 * 103.00110 * 180.02562 * 5 4 2 7 7 F 1.39890 * 109.47356 * 59.99860 * 6 5 4 8 8 F 1.39903 * 109.46939 * 180.02562 * 6 5 4 9 9 F 1.39902 * 109.46870 * 299.99357 * 6 5 4 10 10 C 1.50705 * 109.47258 * 239.99566 * 2 1 3 11 11 O 1.21299 * 119.99726 * 240.00582 * 10 2 1 12 12 N 1.34777 * 119.99695 * 59.99713 * 10 2 1 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 2 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48504 * 109.47034 * 59.99910 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99983 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.09004 * 109.47414 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47169 * 300.00401 * 1 2 3 28 28 H 1.09009 * 109.47391 * 60.00593 * 1 2 3 29 29 H 1.09001 * 109.47261 * 54.99658 * 4 2 1 30 30 H 1.09000 * 109.47363 * 175.00055 * 4 2 1 31 31 H 0.96997 * 119.99849 * 0.02562 * 12 10 2 32 32 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 33 33 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 34 34 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 1.5600 0.2157 2.7266 6 6 2.2429 -0.7796 4.0807 7 9 3.6306 -0.8777 3.9335 8 9 1.9452 -0.1695 5.3040 9 9 1.6789 -2.0595 4.0491 10 6 2.0324 -0.7105 -1.2304 11 8 2.7297 -1.6968 -1.1190 12 7 1.7067 -0.2501 -2.4546 13 6 2.1758 -0.9127 -3.6025 14 6 2.9887 -2.0603 -3.6224 15 7 3.2130 -2.3856 -4.8704 16 7 2.5624 -1.4576 -5.6934 17 6 2.5608 -1.4560 -7.0666 18 1 2.0193 -0.6924 -7.6051 19 6 3.2609 -2.4339 -7.7634 20 7 3.9192 -3.3623 -7.1087 21 14 3.2651 -2.4273 -9.6314 22 1 3.8475 -1.1518 -10.1205 23 1 4.0781 -3.5661 -10.1285 24 1 1.8725 -2.5590 -10.1300 25 6 1.9256 -0.5581 -4.8880 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6053 -1.7197 1.2953 30 1 3.1262 -0.7995 1.2057 31 1 1.1493 0.5387 -2.5435 32 1 3.3609 -2.5862 -2.7556 33 1 4.4075 -4.0449 -7.5949 34 1 1.3317 0.2827 -5.2145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361925829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:48 Heat of formation + Delta-G solvation = -97.073649 kcal Electronic energy + Delta-G solvation = -24041.695532 eV Core-core repulsion = 19688.488451 eV Total energy + Delta-G solvation = -4353.207081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.55039 -48.18710 -48.12648 -40.12855 -38.91541 -34.75209 -34.33811 -33.15604 -30.27598 -28.23042 -27.57275 -26.67541 -25.14296 -23.54234 -21.03336 -20.23587 -19.53781 -19.37933 -18.98866 -18.92430 -17.71534 -17.01172 -15.81820 -15.57265 -15.45471 -15.24245 -14.99407 -14.98968 -14.54463 -14.44069 -14.26065 -14.25048 -14.05752 -13.72367 -13.42223 -13.15892 -12.96904 -12.52266 -12.30136 -11.83918 -11.68964 -11.59426 -11.44695 -11.26391 -10.99796 -10.84896 -10.58629 -10.23506 -9.27703 -9.20829 -8.85166 -8.79260 -8.10691 -6.76410 -6.59126 -4.26908 -0.25085 1.34500 2.71010 2.71873 2.99411 3.02403 3.06765 3.49238 3.53094 3.54187 3.62344 3.84221 4.19183 4.33830 4.54078 4.62797 4.86441 4.98725 5.11176 5.24320 5.32431 5.48939 5.66069 5.92079 6.19425 6.39735 6.83710 6.90266 7.04098 7.19092 7.81375 8.08442 8.22430 8.55944 8.75602 9.33370 9.62474 10.36743 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.040575 B = 0.002239 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.911069 B =12500.012864 C =12937.773844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.108 0.892 4 C -0.073 4.073 5 S -0.167 6.167 6 C 0.464 3.536 7 F -0.167 7.167 8 F -0.153 7.153 9 F -0.167 7.167 10 C 0.508 3.492 11 O -0.534 6.534 12 N -0.617 5.617 13 C -0.063 4.063 14 C -0.032 4.032 15 N -0.261 5.261 16 N -0.141 5.141 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.083 4.083 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.398 0.602 32 H 0.176 0.824 33 H 0.276 0.724 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 8.548 16.417 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.222 4.222 5 S 0.054 5.946 6 C 0.303 3.697 7 F -0.149 7.149 8 F -0.134 7.134 9 F -0.149 7.149 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.259 5.259 13 C -0.168 4.168 14 C -0.208 4.208 15 N -0.092 5.092 16 N 0.092 4.908 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.235 4.235 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.231 0.769 32 H 0.192 0.808 33 H 0.086 0.914 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.870 7.705 15.827 18.556 hybrid contribution 0.024 -0.093 -0.132 0.163 sum -5.847 7.611 15.695 18.397 Atomic orbital electron populations 1.21924 0.91895 1.03794 1.03195 1.20982 0.98321 1.00933 0.91069 0.87424 1.23558 1.06555 1.01389 0.90649 1.87932 1.73001 1.34572 0.99047 1.22716 0.78390 0.81335 0.87303 1.93331 1.29996 1.96143 1.95452 1.93249 1.92974 1.82661 1.44543 1.93329 1.84448 1.40711 1.96428 1.19895 0.81893 0.85372 0.83715 1.90625 1.38199 1.26291 1.86017 1.42414 1.50154 1.29482 1.03848 1.17252 1.12969 1.02066 0.84537 1.24107 1.02709 0.97527 0.96442 1.78266 1.19571 1.12793 0.98555 1.44554 1.26813 1.14387 1.05094 1.19834 1.33935 1.14979 0.76832 0.86627 1.25649 0.95164 0.94929 1.01377 1.70201 1.22520 1.10292 1.36567 0.85890 0.79077 0.78676 0.80482 1.19137 1.20118 1.19137 1.21259 1.10917 1.01964 0.89314 0.91206 0.90865 0.91156 0.87328 0.87080 0.76899 0.80754 0.91356 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.92 37.16 0.33 -0.92 16 2 C -0.09 -0.92 2.72 -91.77 -0.25 -1.17 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.07 -0.76 4.70 37.16 0.17 -0.58 16 5 S -0.17 -1.52 20.58 -107.50 -2.21 -3.74 16 6 C 0.46 4.66 3.51 101.05 0.35 5.01 16 7 F -0.17 -1.81 17.34 2.25 0.04 -1.77 16 8 F -0.15 -1.52 17.36 2.25 0.04 -1.48 16 9 F -0.17 -1.78 17.34 2.25 0.04 -1.74 16 10 C 0.51 7.87 7.13 -10.98 -0.08 7.79 16 11 O -0.53 -10.48 13.07 5.54 0.07 -10.40 16 12 N -0.62 -10.00 5.36 -10.00 -0.05 -10.06 16 13 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 14 C -0.03 -0.83 10.85 -17.04 -0.18 -1.02 16 15 N -0.26 -7.47 10.40 30.80 0.32 -7.15 16 16 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 17 C -0.32 -8.41 10.25 -14.81 -0.15 -8.56 16 18 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -21.28 11.81 55.50 0.66 -20.62 16 21 Si 0.94 18.63 29.55 -169.99 -5.02 13.61 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.52 7.13 -51.93 -0.37 0.15 16 28 H 0.07 0.51 7.57 -51.92 -0.39 0.12 16 29 H 0.11 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.11 1.25 7.95 -51.92 -0.41 0.83 16 31 H 0.40 4.81 8.24 -40.82 -0.34 4.48 16 32 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 33 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -31.93 325.27 -4.99 -36.92 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.06 Total: 7.79 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.67 Total: -2.42 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.88 Total: -41.67 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.12 Total: -5.00 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.93 -4.99 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361925829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.149 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds