Wall clock time and date at job start Tue Mar 31 2020 13:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.53000 * 109.46931 * 119.99759 * 2 1 3 5 5 S 1.81396 * 109.47185 * 295.00030 * 4 2 1 6 6 C 1.81401 * 103.00110 * 180.02562 * 5 4 2 7 7 F 1.39890 * 109.47356 * 59.99860 * 6 5 4 8 8 F 1.39903 * 109.46939 * 180.02562 * 6 5 4 9 9 F 1.39902 * 109.46870 * 299.99357 * 6 5 4 10 10 C 1.50705 * 109.47258 * 239.99566 * 2 1 3 11 11 O 1.21299 * 119.99726 * 240.00582 * 10 2 1 12 12 N 1.34777 * 119.99695 * 59.99713 * 10 2 1 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 2 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48504 * 109.47034 * 59.99910 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99983 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.09004 * 109.47414 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47169 * 300.00401 * 1 2 3 28 28 H 1.09009 * 109.47391 * 60.00593 * 1 2 3 29 29 H 1.09001 * 109.47261 * 54.99658 * 4 2 1 30 30 H 1.09000 * 109.47363 * 175.00055 * 4 2 1 31 31 H 0.96997 * 119.99849 * 0.02562 * 12 10 2 32 32 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 33 33 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 34 34 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 1.5600 0.2157 2.7266 6 6 2.2429 -0.7796 4.0807 7 9 3.6306 -0.8777 3.9335 8 9 1.9452 -0.1695 5.3040 9 9 1.6789 -2.0595 4.0491 10 6 2.0324 -0.7105 -1.2304 11 8 2.7297 -1.6968 -1.1190 12 7 1.7067 -0.2501 -2.4546 13 6 2.1758 -0.9127 -3.6025 14 6 2.9887 -2.0603 -3.6224 15 7 3.2130 -2.3856 -4.8704 16 7 2.5624 -1.4576 -5.6934 17 6 2.5608 -1.4560 -7.0666 18 1 2.0193 -0.6924 -7.6051 19 6 3.2609 -2.4339 -7.7634 20 7 3.9192 -3.3623 -7.1087 21 14 3.2651 -2.4273 -9.6314 22 1 3.8475 -1.1518 -10.1205 23 1 4.0781 -3.5661 -10.1285 24 1 1.8725 -2.5590 -10.1300 25 6 1.9256 -0.5581 -4.8880 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6053 -1.7197 1.2953 30 1 3.1262 -0.7995 1.2057 31 1 1.1493 0.5387 -2.5435 32 1 3.3609 -2.5862 -2.7556 33 1 4.4075 -4.0449 -7.5949 34 1 1.3317 0.2827 -5.2145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361925829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:48 Heat of formation + Delta-G solvation = -117.676531 kcal Electronic energy + Delta-G solvation = -24042.588940 eV Core-core repulsion = 19688.488451 eV Total energy + Delta-G solvation = -4354.100489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.36468 -48.99394 -48.95967 -41.75587 -40.47076 -35.99945 -35.71504 -34.87912 -32.21028 -29.76422 -28.59227 -27.47386 -26.92087 -24.75686 -22.82466 -21.56384 -21.08586 -20.37660 -19.80911 -19.74867 -19.32473 -18.25826 -17.41405 -17.03823 -16.61252 -16.41166 -15.89990 -15.84033 -15.79513 -15.48298 -15.35591 -15.15620 -15.08323 -15.07047 -14.79461 -14.76994 -14.23705 -13.50739 -13.37413 -13.22621 -13.21382 -12.87237 -12.83795 -12.55131 -12.34302 -12.13812 -11.81811 -11.66156 -10.99125 -10.81503 -10.62154 -10.09021 -9.52543 -8.51650 -8.45879 -6.23138 -1.04201 0.50751 1.22864 1.40557 1.52688 1.56759 1.87911 1.92122 2.07123 2.32392 2.53392 2.71207 2.73328 2.93178 3.10328 3.32842 3.67982 3.83775 4.18540 4.40278 4.45967 4.54979 4.62575 4.85307 4.92782 5.01550 5.10760 5.27620 5.31181 5.48363 5.97110 6.32937 6.74396 6.75604 7.38276 7.48472 7.70182 8.53280 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.040575 B = 0.002239 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.911069 B =12500.012864 C =12937.773844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 H 0.138 0.862 4 C -0.082 4.082 5 S -0.123 6.123 6 C 0.457 3.543 7 F -0.174 7.174 8 F -0.152 7.152 9 F -0.173 7.173 10 C 0.507 3.493 11 O -0.577 6.577 12 N -0.610 5.610 13 C -0.044 4.044 14 C -0.060 4.060 15 N -0.313 5.313 16 N -0.169 5.169 17 C -0.354 4.354 18 H 0.141 0.859 19 C -0.007 4.007 20 N -0.826 5.826 21 Si 1.018 2.982 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.253 1.253 25 C -0.079 4.079 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.422 0.578 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 11.201 16.435 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.156 0.844 4 C -0.231 4.231 5 S 0.099 5.901 6 C 0.295 3.705 7 F -0.156 7.156 8 F -0.133 7.133 9 F -0.155 7.155 10 C 0.293 3.707 11 O -0.457 6.457 12 N -0.255 5.255 13 C -0.150 4.150 14 C -0.236 4.236 15 N -0.145 5.145 16 N 0.062 4.938 17 C -0.485 4.485 18 H 0.159 0.841 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.837 3.163 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.177 1.177 25 C -0.230 4.230 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.184 0.816 33 H 0.085 0.915 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.775 10.413 15.885 20.524 hybrid contribution 0.557 -0.852 0.086 1.021 sum -7.218 9.562 15.971 19.965 Atomic orbital electron populations 1.21970 0.89857 1.03752 1.05021 1.20942 0.99670 1.01293 0.87768 0.84447 1.23513 1.05930 1.01676 0.91960 1.87742 1.72296 1.32986 0.97069 1.22961 0.78201 0.81426 0.87873 1.93322 1.30616 1.96191 1.95509 1.93251 1.92921 1.82564 1.44598 1.93322 1.84459 1.41210 1.96483 1.20907 0.80381 0.84654 0.84748 1.90620 1.39906 1.28408 1.86725 1.42367 1.50561 1.30065 1.02467 1.17310 1.10735 1.00531 0.86411 1.24181 1.04358 0.99400 0.95642 1.78155 1.21489 1.14898 0.99918 1.44834 1.28039 1.15213 1.05731 1.20572 1.34773 1.16117 0.77054 0.84118 1.26875 0.94046 0.93959 1.06992 1.70392 1.24418 1.11689 1.38910 0.84665 0.79564 0.78856 0.73203 1.17703 1.20477 1.17694 1.22037 1.09862 1.01988 0.89077 0.92250 0.88924 0.89450 0.88120 0.88272 0.74069 0.81584 0.91469 0.79370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.92 71.98 0.64 -1.31 16 2 C -0.07 -1.31 2.72 -11.54 -0.03 -1.34 16 3 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.08 -1.57 4.70 71.98 0.34 -1.23 16 5 S -0.12 -1.93 20.58 -56.49 -1.16 -3.09 16 6 C 0.46 8.58 3.51 113.37 0.40 8.97 16 7 F -0.17 -3.65 17.34 44.97 0.78 -2.87 16 8 F -0.15 -2.79 17.36 44.97 0.78 -2.01 16 9 F -0.17 -3.53 17.34 44.97 0.78 -2.75 16 10 C 0.51 15.04 7.13 87.66 0.62 15.67 16 11 O -0.58 -22.97 13.07 -3.09 -0.04 -23.01 16 12 N -0.61 -18.48 5.36 -303.92 -1.63 -20.11 16 13 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16 14 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 15 N -0.31 -18.64 10.40 -56.47 -0.59 -19.22 16 16 N -0.17 -9.21 3.74 -190.01 -0.71 -9.92 16 17 C -0.35 -18.45 10.25 84.01 0.86 -17.59 16 18 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 19 C -0.01 -0.37 5.50 84.95 0.47 0.09 16 20 N -0.83 -47.57 11.81 21.66 0.26 -47.31 16 21 Si 1.02 38.14 29.55 68.60 2.03 40.16 16 22 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 23 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 24 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 25 C -0.08 -3.51 11.49 83.37 0.96 -2.55 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.92 7.13 -2.39 -0.02 0.90 16 28 H 0.09 0.89 7.57 -2.38 -0.02 0.87 16 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.17 7.95 -2.39 -0.02 2.15 16 31 H 0.42 8.64 8.24 -92.71 -0.76 7.88 16 32 H 0.17 8.93 5.92 -2.91 -0.02 8.91 16 33 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.19 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -73.75 325.27 6.35 -67.40 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.41 Total: 25.97 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.45 Total: -3.23 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -2.67 Total: -96.57 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 2.34 Total: -7.63 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -1.16 Total: -3.09 kcal Total: -73.75 6.35 -67.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361925829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.277 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds