Wall clock time and date at job start Tue Mar 31 2020 14:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47202 * 239.99529 * 3 2 1 5 5 H 1.48497 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47019 * 119.99801 * 3 2 1 7 7 C 1.37890 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99481 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46722 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46986 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46879 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99912 * 0.02562 * 12 11 10 14 14 O 1.34266 * 119.99911 * 180.02562 * 12 11 10 15 15 C 1.35928 * 117.00053 * 175.01060 * 14 12 11 16 16 C 1.38853 * 119.98260 * 255.25167 * 15 14 12 17 17 C 1.38255 * 120.24943 * 180.02562 * 16 15 14 18 18 C 1.37994 * 120.21320 * 0.02562 * 17 16 15 19 19 N 1.48017 * 120.02208 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99982 * 6.55629 * 19 18 17 21 21 O 1.21801 * 119.99672 * 186.55973 * 19 18 17 22 22 C 1.39623 * 119.95860 * 359.97438 * 18 17 16 23 23 C 1.47735 * 120.12536 * 179.97438 * 22 18 17 24 24 O 1.21467 * 119.99688 * 55.48681 * 23 22 18 25 25 O 1.34704 * 120.00110 * 235.48787 * 23 22 18 26 26 C 1.38446 * 119.97924 * 75.53119 * 15 14 12 27 27 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47745 * 59.99941 * 9 7 2 29 29 H 1.09003 * 109.47428 * 299.99113 * 9 7 2 30 30 H 1.08993 * 109.46987 * 60.00160 * 10 9 7 31 31 H 1.08994 * 109.47054 * 300.00217 * 10 9 7 32 32 H 1.08998 * 109.46984 * 59.99878 * 11 10 9 33 33 H 1.08993 * 109.47058 * 300.00193 * 11 10 9 34 34 H 1.08003 * 119.87877 * 0.02562 * 16 15 14 35 35 H 1.08010 * 119.89647 * 180.02562 * 17 16 15 36 36 H 0.96703 * 116.99649 * 179.97438 * 25 23 22 37 37 H 1.08000 * 120.10708 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4594 -6.1326 0.0005 13 8 3.6473 -5.9118 0.0001 14 8 2.0118 -7.3985 0.0004 15 6 2.9435 -8.3825 -0.1055 16 6 3.1019 -9.0619 -1.3061 17 6 4.0475 -10.0640 -1.4198 18 6 4.8404 -10.3964 -0.3403 19 7 5.8511 -11.4703 -0.4666 20 8 6.0668 -11.9790 -1.5521 21 8 6.4669 -11.8455 0.5150 22 6 4.6886 -9.7189 0.8711 23 6 5.5350 -10.0721 2.0292 24 8 6.7451 -10.0507 1.9260 25 8 4.9649 -10.4178 3.1997 26 6 3.7302 -8.7107 0.9855 27 1 -0.4850 0.8400 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8904 30 1 2.8717 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8894 32 1 0.8531 -5.0451 -0.8886 33 1 0.8537 -5.0446 0.8913 34 1 2.4840 -8.8065 -2.1543 35 1 4.1661 -10.5885 -2.3565 36 1 5.5597 -10.6410 3.9287 37 1 3.6046 -8.1863 1.9213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:55 Heat of formation + Delta-G solvation = -166.745866 kcal Electronic energy + Delta-G solvation = -25990.589883 eV Core-core repulsion = 21701.172706 eV Total energy + Delta-G solvation = -4289.417177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.61491 -42.74734 -41.50735 -40.05451 -38.30505 -37.90538 -37.27005 -36.22317 -34.16221 -33.27419 -32.84369 -30.14126 -28.08315 -26.46680 -26.01563 -24.41925 -23.51896 -22.45189 -21.56481 -20.62932 -20.00355 -19.83091 -19.29231 -18.80248 -18.71155 -18.26855 -18.09118 -17.47298 -17.04368 -16.49666 -16.24765 -16.03343 -15.56480 -15.30976 -14.80773 -14.77629 -14.37638 -14.01898 -13.86839 -13.76336 -13.20260 -13.07728 -12.75646 -12.69293 -12.63602 -12.58604 -12.50125 -12.48374 -12.33721 -11.98714 -11.96190 -11.58823 -11.44798 -11.24235 -10.86471 -10.73993 -10.53387 -8.20439 -6.29549 -1.75166 -0.69810 -0.17023 0.00763 0.82566 0.85925 1.19048 1.41330 1.42188 1.49469 1.50444 1.98044 2.41440 2.85920 3.11429 3.13723 3.29058 3.42870 3.56170 3.95049 3.96529 4.10656 4.18174 4.25000 4.27003 4.56219 4.61733 4.77171 4.89598 4.95595 5.03126 5.11506 5.22690 5.28961 5.53756 5.74451 5.87149 6.24771 6.26377 6.49402 6.65060 6.86501 7.39257 8.90535 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.002208 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.482011 B =12675.603993 C =13023.694159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.090 4.090 11 C -0.100 4.100 12 C 0.475 3.525 13 O -0.515 6.515 14 O -0.281 6.281 15 C 0.127 3.873 16 C -0.076 4.076 17 C -0.023 4.023 18 C -0.026 4.026 19 N 0.023 4.977 20 O -0.130 6.130 21 O -0.187 6.187 22 C -0.050 4.050 23 C 0.529 3.471 24 O -0.504 6.504 25 O -0.493 6.493 26 C -0.079 4.079 27 H 0.264 0.736 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.204 0.796 35 H 0.204 0.796 36 H 0.441 0.559 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -23.809 -0.151 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.136 4.136 12 C 0.321 3.679 13 O -0.400 6.400 14 O -0.196 6.196 15 C 0.084 3.916 16 C -0.095 4.095 17 C -0.042 4.042 18 C -0.109 4.109 19 N 0.542 4.458 20 O -0.354 6.354 21 O -0.395 6.395 22 C -0.053 4.053 23 C 0.370 3.630 24 O -0.391 6.391 25 O -0.308 6.308 26 C -0.098 4.098 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.221 0.779 35 H 0.221 0.779 36 H 0.305 0.695 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.310 -23.009 -0.309 23.127 hybrid contribution 1.277 0.564 0.758 1.589 sum 3.586 -22.444 0.449 22.734 Atomic orbital electron populations 1.70033 1.07374 1.27829 1.51467 1.25830 0.95744 1.02838 0.94837 0.85641 0.78440 0.78854 0.78979 1.19513 1.20663 1.19595 1.21656 0.93393 0.92760 1.50765 0.92921 1.19007 0.94192 0.91851 0.96162 1.21331 0.98023 0.92120 1.01315 1.21633 0.96627 0.87052 1.08336 1.24882 0.89977 0.82439 0.70609 1.90750 1.19632 1.84293 1.45340 1.84762 1.36494 1.14709 1.83651 1.18986 0.89560 0.89388 0.93618 1.21853 0.96719 0.93565 0.97317 1.21312 0.90094 0.94746 0.98014 1.21318 0.96880 0.95166 0.97513 1.43686 1.00603 1.00970 1.00516 1.94502 1.69573 1.56765 1.14574 1.94651 1.49446 1.66129 1.29234 1.18650 0.97509 0.98094 0.91023 1.20317 0.85797 0.73506 0.83359 1.90986 1.16035 1.48093 1.84035 1.84522 1.45619 1.79041 1.21626 1.21591 0.91514 0.95506 1.01224 0.92681 0.97446 0.97595 0.93281 0.93075 0.84839 0.85235 0.77910 0.77917 0.69540 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.27 4.44 30.60 0.14 -3.13 16 11 C -0.10 -2.43 5.81 29.85 0.17 -2.25 16 12 C 0.48 11.23 7.82 71.24 0.56 11.79 16 13 O -0.51 -15.81 15.42 21.96 0.34 -15.47 16 14 O -0.28 -5.04 10.02 4.48 0.04 -4.99 16 15 C 0.13 2.11 5.17 22.47 0.12 2.22 16 16 C -0.08 -0.82 9.98 22.42 0.22 -0.59 16 17 C -0.02 -0.28 9.54 22.22 0.21 -0.06 16 18 C -0.03 -0.51 6.86 36.65 0.25 -0.25 16 19 N 0.02 0.58 4.45 -45.80 -0.20 0.38 16 20 O -0.13 -3.04 18.46 18.89 0.35 -2.69 16 21 O -0.19 -5.48 15.00 26.17 0.39 -5.09 16 22 C -0.05 -1.05 5.76 -20.11 -0.12 -1.16 16 23 C 0.53 11.96 6.34 70.33 0.45 12.40 16 24 O -0.50 -14.83 15.56 27.60 0.43 -14.40 16 25 O -0.49 -7.41 13.44 -56.14 -0.75 -8.16 16 26 C -0.08 -1.45 9.22 22.64 0.21 -1.25 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 32 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 35 H 0.20 1.15 7.62 -2.91 -0.02 1.13 16 36 H 0.44 2.56 9.11 -74.06 -0.67 1.88 16 37 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -76.09 344.64 6.43 -69.66 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 0.47 Total: -1.33 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 3.05 Total: -9.77 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.08 Total: -52.82 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: 0.80 Total: -50.80 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -76.09 6.43 -69.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.086 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds