Wall clock time and date at job start Tue Mar 31 2020 14:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48498 * 109.46853 * 270.00131 * 3 2 1 5 5 H 1.48498 * 109.46872 * 29.99863 * 3 2 1 6 6 H 1.48498 * 109.47109 * 150.00377 * 3 2 1 7 7 C 1.37874 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00067 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47435 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00191 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99835 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.47026 * 179.97438 * 13 11 10 15 15 C 1.34864 * 116.99746 * 180.02562 * 14 13 11 16 16 O 1.21574 * 120.00453 * 0.02562 * 15 14 13 17 17 C 1.46863 * 119.99735 * 179.97438 * 15 14 13 18 18 C 1.37814 * 125.77550 * 180.02562 * 17 15 14 19 19 C 1.39763 * 106.89153 * 179.76280 * 18 17 15 20 20 C 1.38136 * 106.84433 * 0.38261 * 19 18 17 21 21 C 1.46311 * 125.81656 * 179.88046 * 20 19 18 22 22 C 1.35341 * 119.99670 * 221.32132 * 21 20 19 23 23 C 1.46205 * 119.99843 * 8.60403 * 22 21 20 24 24 O 1.21626 * 120.00381 * 6.76444 * 23 22 21 25 25 O 1.34929 * 119.99836 * 186.76232 * 23 22 21 26 26 O 1.34565 * 108.36051 * 359.61415 * 20 19 18 27 27 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47671 * 60.00126 * 9 7 2 29 29 H 1.09008 * 109.47274 * 300.00012 * 9 7 2 30 30 H 0.96996 * 119.99348 * 359.97438 * 10 9 7 31 31 H 1.09007 * 109.47073 * 59.99639 * 13 11 10 32 32 H 1.08996 * 109.47239 * 299.99864 * 13 11 10 33 33 H 1.08005 * 126.55168 * 0.02562 * 18 17 15 34 34 H 1.08001 * 126.58178 * 180.26935 * 19 18 17 35 35 H 1.07996 * 120.00187 * 41.32013 * 21 20 19 36 36 H 1.07995 * 120.00179 * 188.60856 * 22 21 20 37 37 H 0.96701 * 114.00133 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 8 2.0070 -7.2863 -0.0015 15 6 2.7416 -8.4173 -0.0015 16 8 3.9556 -8.3537 -0.0010 17 6 2.0748 -9.7258 -0.0008 18 6 2.7052 -10.9513 -0.0001 19 6 1.7018 -11.9242 0.0059 20 6 0.4941 -11.2537 -0.0001 21 6 -0.8303 -11.8754 0.0007 22 6 -1.8154 -11.3702 -0.7779 23 6 -1.5114 -10.3273 -1.7565 24 8 -0.3573 -10.0005 -1.9585 25 8 -2.5111 -9.7274 -2.4357 26 8 0.7435 -9.9313 -0.0008 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8897 30 1 3.1566 -3.4354 -0.0009 31 1 3.3598 -5.9714 0.8883 32 1 3.3596 -5.9707 -0.8916 33 1 3.7710 -11.1264 0.0003 34 1 1.8434 -12.9949 0.0121 35 1 -1.0219 -12.7373 0.6225 36 1 -2.8259 -11.7373 -0.6764 37 1 -2.2125 -9.0520 -3.0600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:06 Heat of formation + Delta-G solvation = -169.762786 kcal Electronic energy + Delta-G solvation = -25945.772256 eV Core-core repulsion = 21656.224256 eV Total energy + Delta-G solvation = -4289.548001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.81270 -40.44449 -40.22019 -38.68179 -36.48059 -36.40844 -34.46294 -34.24808 -33.25867 -32.41376 -30.22699 -28.98091 -26.81586 -25.64071 -23.48237 -22.48881 -22.08252 -21.00149 -19.96883 -19.94460 -18.72875 -18.39860 -17.52659 -17.42060 -16.91060 -16.55170 -16.05497 -15.72077 -15.57354 -15.13953 -14.98457 -14.62915 -14.45204 -14.29478 -13.65068 -13.46616 -13.23952 -13.03357 -13.00587 -12.70697 -12.54249 -11.99884 -11.79261 -11.78384 -11.07838 -11.00611 -10.92735 -10.89197 -10.74841 -10.66259 -10.34641 -10.23181 -9.44253 -9.18416 -8.78392 -8.60897 -7.98935 -6.19708 -4.27126 -0.06219 0.93594 1.98755 2.06363 2.59530 2.71990 2.75288 2.92026 3.17845 3.23199 3.29347 3.31825 3.90156 4.11993 4.33155 4.50409 4.63773 4.73828 4.81686 5.07088 5.16335 5.21762 5.21929 5.26701 5.29513 5.33298 5.52146 5.65709 5.99718 6.13006 6.19497 6.59270 7.22380 7.30440 7.45762 7.51186 7.59638 7.62171 7.91786 8.49711 8.71059 8.96378 9.39242 10.90478 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002475 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.466464 B =11309.370217 C =12591.265631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.532 6.532 13 C 0.048 3.952 14 O -0.316 6.316 15 C 0.552 3.448 16 O -0.489 6.489 17 C -0.038 4.038 18 C -0.116 4.116 19 C -0.191 4.191 20 C 0.039 3.961 21 C 0.003 3.997 22 C -0.161 4.161 23 C 0.494 3.506 24 O -0.492 6.492 25 O -0.504 6.504 26 O -0.110 6.110 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -27.434 -0.671 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.409 6.409 13 C -0.029 4.029 14 O -0.230 6.230 15 C 0.396 3.604 16 O -0.379 6.379 17 C -0.090 4.090 18 C -0.135 4.135 19 C -0.210 4.210 20 C -0.014 4.014 21 C -0.015 4.015 22 C -0.180 4.180 23 C 0.338 3.662 24 O -0.380 6.380 25 O -0.315 6.315 26 O -0.003 6.003 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.176 0.824 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.263 -27.315 -0.452 27.320 hybrid contribution 1.231 1.443 -0.488 1.959 sum 0.968 -25.872 -0.941 25.908 Atomic orbital electron populations 1.69976 1.06129 1.27409 1.48705 1.24956 0.94936 0.99501 0.94611 0.86384 0.79604 0.82495 0.78254 1.20422 1.20972 1.19706 1.21205 0.93342 0.90280 1.53488 0.91741 1.19179 0.88164 0.81504 0.98032 1.46353 1.11536 1.05250 1.72497 1.19839 0.89086 0.83955 0.78862 1.90720 1.16295 1.84502 1.49399 1.22970 0.94496 0.80561 1.04900 1.86731 1.39458 1.13763 1.83040 1.19316 0.84783 0.82970 0.73323 1.90926 1.13214 1.87001 1.46806 1.21067 0.81096 0.92776 1.14044 1.22012 1.01284 0.89352 1.00884 1.22083 0.90056 1.00732 1.08099 1.21126 0.95339 0.81094 1.03873 1.21786 0.86877 0.96989 0.95857 1.22628 1.01232 0.97362 0.96730 1.21035 0.83198 0.81129 0.80876 1.91031 1.21541 1.61424 1.64022 1.84998 1.39188 1.53163 1.54167 1.84313 1.23750 1.24777 1.67480 0.92370 0.95263 0.95249 0.77386 0.88123 0.88138 0.81585 0.81840 0.80880 0.82401 0.72746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 10 N -0.71 -14.87 5.55 -61.47 -0.34 -15.22 16 11 C 0.50 10.41 7.91 -10.99 -0.09 10.32 16 12 O -0.53 -13.53 16.50 -14.11 -0.23 -13.76 16 13 C 0.05 0.78 5.96 36.00 0.21 0.99 16 14 O -0.32 -5.70 9.77 -48.29 -0.47 -6.17 16 15 C 0.55 8.86 7.94 34.22 0.27 9.13 16 16 O -0.49 -7.95 16.66 -19.32 -0.32 -8.27 16 17 C -0.04 -0.54 7.21 -36.25 -0.26 -0.80 16 18 C -0.12 -1.27 10.64 -39.17 -0.42 -1.68 16 19 C -0.19 -1.67 10.88 -39.05 -0.42 -2.10 16 20 C 0.04 0.41 5.47 -36.38 -0.20 0.21 16 21 C 0.00 0.02 10.15 -37.37 -0.38 -0.36 16 22 C -0.16 -1.13 10.20 -37.42 -0.38 -1.51 16 23 C 0.49 5.40 8.04 33.93 0.27 5.67 16 24 O -0.49 -7.21 13.38 -27.51 -0.37 -7.58 16 25 O -0.50 -4.71 13.56 -41.12 -0.56 -5.27 16 26 O -0.11 -1.62 8.04 -22.11 -0.18 -1.80 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.41 2.73 8.98 45.56 0.41 3.14 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -38.51 350.17 -6.16 -44.67 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -2.85 Total: 4.47 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.84 Total: 13.14 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.40 Total: -40.48 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.13 Total: -42.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.51 -6.16 -44.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.091 kcal (2) G-P(sol) polarization free energy of solvation -38.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds