Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38334 * 119.94095 * 2 1 4 4 C 1.38295 * 120.23854 * 180.25674 * 3 2 1 5 5 C 1.38052 * 120.11455 * 359.48610 * 4 3 2 6 6 C 1.39281 * 119.88047 * 0.53067 * 5 4 3 7 7 C 1.48454 * 120.11637 * 179.69916 * 6 5 4 8 8 N 1.34047 * 126.67362 * 130.44444 * 7 6 5 9 9 N 1.28990 * 107.26973 * 179.83678 * 8 7 6 10 10 N 1.28729 * 108.93973 * 0.43002 * 9 8 7 11 11 H 0.97004 * 125.33806 * 179.74645 * 10 9 8 12 12 N 1.28872 * 109.31953 * 359.72589 * 10 9 8 13 13 C 1.38005 * 119.94104 * 180.02562 * 2 1 3 14 14 S 1.76195 * 120.06025 * 0.02562 * 13 2 1 15 15 O 1.42099 * 106.40127 * 16.13241 * 14 13 2 16 16 O 1.42101 * 106.40352 * 149.05114 * 14 13 2 17 17 N 1.65602 * 107.21998 * 262.59330 * 14 13 2 18 18 C 1.46493 * 120.00043 * 65.00063 * 17 14 13 19 19 C 1.50701 * 109.46933 * 165.00252 * 18 17 14 20 20 H 1.07989 * 120.00378 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99665 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00138 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00222 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46798 * 90.00422 * 23 21 19 25 25 H 1.48504 * 109.47146 * 209.99989 * 23 21 19 26 26 H 1.48492 * 109.47152 * 330.00310 * 23 21 19 27 27 H 1.09000 * 109.47277 * 94.97283 * 1 2 3 28 28 H 1.09001 * 109.46962 * 214.97362 * 1 2 3 29 29 H 1.08999 * 109.47050 * 334.97007 * 1 2 3 30 30 H 1.08000 * 119.88392 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.94267 * 179.72519 * 4 3 2 32 32 H 1.08000 * 120.05771 * 180.28207 * 5 4 3 33 33 H 0.97008 * 119.99821 * 244.99879 * 17 14 13 34 34 H 1.09007 * 109.47291 * 284.99992 * 18 17 14 35 35 H 1.08994 * 109.47607 * 45.00070 * 18 17 14 36 36 H 0.97002 * 120.00742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1987 0.0000 4 6 3.5804 1.2059 -0.0054 5 6 4.2792 0.0154 0.0000 6 6 3.5890 -1.1944 -0.0004 7 6 4.3353 -2.4777 -0.0014 8 7 4.1352 -3.5209 0.8163 9 7 4.9846 -4.4340 0.4870 10 7 5.7055 -4.0021 -0.4881 11 1 6.4208 -4.4958 -0.9187 12 7 5.3273 -2.8110 -0.8028 13 6 2.1958 -1.1959 -0.0005 14 16 1.3149 -2.7218 -0.0019 15 8 -0.0197 -2.4143 -0.3810 16 8 2.1270 -3.6534 -0.7033 17 7 1.2457 -3.2494 1.5663 18 6 0.5013 -2.4796 2.5660 19 6 0.2790 -3.3291 3.7907 20 1 0.6543 -4.3412 3.8212 21 6 -0.4044 -2.8143 4.8719 22 7 -0.5989 -3.5558 5.9405 23 14 -1.0542 -1.0638 4.8189 24 1 -2.4316 -1.0637 4.2638 25 1 -1.0742 -0.5014 6.1932 26 1 -0.1733 -0.2347 3.9576 27 1 -0.3634 -0.0891 -1.0238 28 1 -0.3633 -0.8421 0.5891 29 1 -0.3633 0.9311 0.4348 30 1 1.6546 2.1324 -0.0004 31 1 4.1145 2.1445 -0.0098 32 1 5.3592 0.0221 0.0004 33 1 1.6982 -4.0682 1.8230 34 1 1.0711 -1.5911 2.8386 35 1 -0.4614 -2.1807 2.1515 36 1 -1.0794 -3.1936 6.7014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605895983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = 91.840747 kcal Electronic energy + Delta-G solvation = -25934.855765 eV Core-core repulsion = 22163.990118 eV Total energy + Delta-G solvation = -3770.865647 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.33230 -39.52469 -37.04412 -35.45027 -34.69769 -34.31652 -33.74215 -32.57608 -32.12118 -30.84779 -27.33479 -26.97410 -24.81805 -24.46468 -22.74792 -21.94379 -21.12499 -19.32134 -19.00824 -17.79682 -17.16813 -17.05365 -16.19382 -16.08142 -15.88532 -15.21399 -14.85700 -14.33186 -14.07683 -13.75912 -13.48673 -13.39964 -13.02489 -12.59373 -12.53338 -12.45628 -12.19662 -12.07288 -11.95366 -11.64131 -11.57556 -11.39449 -11.07233 -11.04400 -10.86184 -10.56238 -10.48823 -10.21113 -9.92757 -9.44347 -9.38729 -8.80442 -8.80019 -8.41470 -6.12863 -4.13110 0.51120 0.90624 1.02489 1.27212 2.19445 2.32676 3.26260 3.27645 3.33608 3.34046 3.59551 3.66174 4.16809 4.36058 4.40025 4.52946 4.76323 4.80880 5.08656 5.19610 5.20248 5.30519 5.42005 5.57400 5.62294 5.70819 5.88333 5.97820 6.12356 6.23414 6.26695 6.43759 6.45479 6.68761 6.92885 6.99694 7.47717 7.99214 8.23403 8.44857 8.91280 9.45191 10.99737 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.006018 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.905465 B = 4651.919734 C = 5544.838249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.025 3.975 3 C -0.129 4.129 4 C -0.065 4.065 5 C -0.114 4.114 6 C 0.095 3.905 7 C 0.203 3.797 8 N -0.243 5.243 9 N -0.034 5.034 10 N -0.229 5.229 11 H 0.474 0.526 12 N -0.282 5.282 13 C -0.647 4.647 14 S 2.688 3.312 15 O -0.959 6.959 16 O -0.974 6.974 17 N -1.081 6.081 18 C 0.218 3.782 19 C -0.524 4.524 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.893 5.893 23 Si 0.868 3.132 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.261 1.261 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.422 0.578 34 H 0.018 0.982 35 H 0.029 0.971 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 8.578 -13.921 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.134 4.134 6 C 0.091 3.909 7 C -0.078 4.078 8 N -0.117 5.117 9 N -0.029 5.029 10 N -0.075 5.075 11 H 0.327 0.673 12 N -0.134 5.134 13 C -0.733 4.733 14 S 2.775 3.225 15 O -0.949 6.949 16 O -0.963 6.963 17 N -0.844 5.844 18 C 0.094 3.906 19 C -0.564 4.564 20 H 0.102 0.898 21 C -0.129 4.129 22 N -0.531 5.531 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.186 1.186 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.112 7.734 -14.292 19.686 hybrid contribution 0.708 1.303 0.123 1.488 sum 11.819 9.037 -14.169 20.546 Atomic orbital electron populations 1.21586 0.88938 1.04994 1.05216 1.19696 0.96813 0.91180 0.89937 1.21350 0.94402 0.97925 1.01186 1.21301 0.94304 0.97880 0.94857 1.21140 1.00257 0.90937 1.01103 1.16544 0.89757 0.87794 0.96814 1.23438 0.95159 0.96255 0.92947 1.76097 1.16252 0.97784 1.21531 1.78863 1.01146 1.20605 1.02293 1.47618 1.26987 1.09513 1.23351 0.67260 1.74808 1.15554 0.99484 1.23539 1.31085 1.04148 1.21702 1.16400 1.01925 0.73866 0.73036 0.73682 1.93579 1.34697 1.84547 1.82064 1.93510 1.70218 1.60357 1.72252 1.55095 1.66275 1.36326 1.26736 1.19469 0.90498 0.92181 0.88495 1.21043 1.36870 1.01217 0.97227 0.89785 1.24844 0.95359 0.97600 0.95090 1.69877 1.41233 1.36701 1.05283 0.86969 0.80331 0.85378 0.77950 1.19556 1.20869 1.18568 0.88933 0.87628 0.90951 0.84612 0.84595 0.84758 0.74167 0.96378 0.95307 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.36 36.01 0.30 -1.93 16 2 C 0.03 0.38 5.87 -104.67 -0.61 -0.24 16 3 C -0.13 -1.52 9.67 -39.52 -0.38 -1.90 16 4 C -0.07 -0.69 10.03 -39.63 -0.40 -1.08 16 5 C -0.11 -1.41 9.78 -39.26 -0.38 -1.79 16 6 C 0.10 1.51 5.87 -104.90 -0.62 0.89 16 7 C 0.20 3.36 5.86 -156.31 -0.92 2.45 16 8 N -0.24 -4.36 9.87 32.15 0.32 -4.04 16 9 N -0.03 -0.51 13.47 60.35 0.81 0.30 16 10 N -0.23 -2.66 7.90 60.35 0.48 -2.19 16 11 H 0.47 2.81 8.96 -340.37 -3.05 -0.24 16 12 N -0.28 -3.94 12.40 32.17 0.40 -3.54 16 13 C -0.65 -11.01 5.96 -39.26 -0.23 -11.24 16 14 S 2.69 52.13 4.81 -107.50 -0.52 51.62 16 15 O -0.96 -19.51 13.33 -57.17 -0.76 -20.27 16 16 O -0.97 -19.85 14.60 -57.17 -0.83 -20.69 16 17 N -1.08 -22.84 5.61 -11.66 -0.07 -22.90 16 18 C 0.22 5.14 4.64 -5.20 -0.02 5.11 16 19 C -0.52 -14.49 9.83 -34.44 -0.34 -14.82 16 20 H 0.08 2.48 7.90 -52.49 -0.41 2.07 16 21 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 22 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 23 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 27 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 28 H 0.11 1.86 4.09 -51.93 -0.21 1.64 16 29 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.42 8.80 8.33 -34.47 -0.29 8.52 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.03 0.67 6.11 -51.93 -0.32 0.36 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -35.17 316.62 -8.92 -44.09 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.92 Total: 5.45 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -3.70 Total: -22.56 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 2.71 Total: -58.25 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.60 Total: -40.96 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.52 Total: 51.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.17 -8.92 -44.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605895983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.932 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds