Wall clock time and date at job start Tue Mar 31 2020 14:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38334 * 119.94095 * 2 1 4 4 C 1.38295 * 120.23854 * 180.25674 * 3 2 1 5 5 C 1.38052 * 120.11455 * 359.48610 * 4 3 2 6 6 C 1.39281 * 119.88047 * 0.53067 * 5 4 3 7 7 C 1.48454 * 120.11637 * 179.69916 * 6 5 4 8 8 N 1.34047 * 126.67362 * 130.44444 * 7 6 5 9 9 N 1.28990 * 107.26973 * 179.83678 * 8 7 6 10 10 N 1.28729 * 108.93973 * 0.43002 * 9 8 7 11 11 H 0.97004 * 125.33806 * 179.74645 * 10 9 8 12 12 N 1.28872 * 109.31953 * 359.72589 * 10 9 8 13 13 C 1.38005 * 119.94104 * 180.02562 * 2 1 3 14 14 S 1.76195 * 120.06025 * 0.02562 * 13 2 1 15 15 O 1.42099 * 106.40127 * 16.13241 * 14 13 2 16 16 O 1.42101 * 106.40352 * 149.05114 * 14 13 2 17 17 N 1.65602 * 107.21998 * 262.59330 * 14 13 2 18 18 C 1.46493 * 120.00043 * 65.00063 * 17 14 13 19 19 C 1.50701 * 109.46933 * 165.00252 * 18 17 14 20 20 H 1.07989 * 120.00378 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99665 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00138 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00222 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46798 * 90.00422 * 23 21 19 25 25 H 1.48504 * 109.47146 * 209.99989 * 23 21 19 26 26 H 1.48492 * 109.47152 * 330.00310 * 23 21 19 27 27 H 1.09000 * 109.47277 * 94.97283 * 1 2 3 28 28 H 1.09001 * 109.46962 * 214.97362 * 1 2 3 29 29 H 1.08999 * 109.47050 * 334.97007 * 1 2 3 30 30 H 1.08000 * 119.88392 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.94267 * 179.72519 * 4 3 2 32 32 H 1.08000 * 120.05771 * 180.28207 * 5 4 3 33 33 H 0.97008 * 119.99821 * 244.99879 * 17 14 13 34 34 H 1.09007 * 109.47291 * 284.99992 * 18 17 14 35 35 H 1.08994 * 109.47607 * 45.00070 * 18 17 14 36 36 H 0.97002 * 120.00742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1987 0.0000 4 6 3.5804 1.2059 -0.0054 5 6 4.2792 0.0154 0.0000 6 6 3.5890 -1.1944 -0.0004 7 6 4.3353 -2.4777 -0.0014 8 7 4.1352 -3.5209 0.8163 9 7 4.9846 -4.4340 0.4870 10 7 5.7055 -4.0021 -0.4881 11 1 6.4208 -4.4958 -0.9187 12 7 5.3273 -2.8110 -0.8028 13 6 2.1958 -1.1959 -0.0005 14 16 1.3149 -2.7218 -0.0019 15 8 -0.0197 -2.4143 -0.3810 16 8 2.1270 -3.6534 -0.7033 17 7 1.2457 -3.2494 1.5663 18 6 0.5013 -2.4796 2.5660 19 6 0.2790 -3.3291 3.7907 20 1 0.6543 -4.3412 3.8212 21 6 -0.4044 -2.8143 4.8719 22 7 -0.5989 -3.5558 5.9405 23 14 -1.0542 -1.0638 4.8189 24 1 -2.4316 -1.0637 4.2638 25 1 -1.0742 -0.5014 6.1932 26 1 -0.1733 -0.2347 3.9576 27 1 -0.3634 -0.0891 -1.0238 28 1 -0.3633 -0.8421 0.5891 29 1 -0.3633 0.9311 0.4348 30 1 1.6546 2.1324 -0.0004 31 1 4.1145 2.1445 -0.0098 32 1 5.3592 0.0221 0.0004 33 1 1.6982 -4.0682 1.8230 34 1 1.0711 -1.5911 2.8386 35 1 -0.4614 -2.1807 2.1515 36 1 -1.0794 -3.1936 6.7014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605895983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:05 Heat of formation + Delta-G solvation = 62.906604 kcal Electronic energy + Delta-G solvation = -25936.110444 eV Core-core repulsion = 22163.990118 eV Total energy + Delta-G solvation = -3772.120325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.084 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.45273 -40.51363 -38.54080 -36.98307 -36.49500 -35.46925 -34.85299 -34.19378 -33.57448 -31.88889 -29.29069 -28.04426 -25.88767 -25.59552 -24.01363 -23.71685 -22.17950 -20.66904 -20.23549 -19.46064 -18.51133 -18.19094 -17.89307 -17.32980 -17.17336 -16.68874 -16.03210 -15.78705 -15.32553 -15.13214 -14.93045 -14.77143 -14.46398 -14.35456 -13.81808 -13.71230 -13.57267 -13.38104 -13.26119 -13.04629 -12.72543 -12.64242 -12.52035 -12.33505 -12.25240 -12.20859 -11.81296 -11.69314 -11.55257 -11.38103 -10.84923 -10.41671 -10.19723 -9.78640 -8.28735 -6.35723 -0.64257 -0.41240 0.00500 0.17447 1.04584 1.40393 1.43104 1.43555 1.52981 2.06764 2.37597 2.39656 2.53133 2.74107 3.05408 3.26188 3.35965 3.73573 3.91242 4.07780 4.21985 4.25575 4.37930 4.44054 4.48728 4.61847 4.78634 4.81853 5.01972 5.05345 5.09045 5.23421 5.29308 5.39178 5.47377 5.63433 5.77918 6.22401 6.30562 6.69993 7.09283 7.27116 8.87266 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.006018 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.905465 B = 4651.919734 C = 5544.838249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.009 3.991 3 C -0.122 4.122 4 C -0.046 4.046 5 C -0.111 4.111 6 C 0.069 3.931 7 C 0.187 3.813 8 N -0.284 5.284 9 N -0.050 5.050 10 N -0.198 5.198 11 H 0.495 0.505 12 N -0.274 5.274 13 C -0.666 4.666 14 S 2.693 3.307 15 O -0.978 6.978 16 O -0.992 6.992 17 N -1.092 6.092 18 C 0.230 3.770 19 C -0.538 4.538 20 H 0.044 0.956 21 C 0.014 3.986 22 N -0.942 5.942 23 Si 0.932 3.068 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.231 1.231 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.186 0.814 32 H 0.158 0.842 33 H 0.417 0.583 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.733 12.899 -15.272 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 C -0.141 4.141 4 C -0.063 4.063 5 C -0.131 4.131 6 C 0.065 3.935 7 C -0.094 4.094 8 N -0.157 5.157 9 N -0.045 5.045 10 N -0.049 5.049 11 H 0.354 0.646 12 N -0.127 5.127 13 C -0.757 4.757 14 S 2.786 3.214 15 O -0.968 6.968 16 O -0.982 6.982 17 N -0.852 5.852 18 C 0.105 3.895 19 C -0.577 4.577 20 H 0.062 0.938 21 C -0.185 4.185 22 N -0.581 5.581 23 Si 0.753 3.247 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.154 1.154 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.193 0.807 31 H 0.203 0.797 32 H 0.176 0.824 33 H 0.253 0.747 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.347 11.977 -15.661 23.263 hybrid contribution 0.473 -0.068 0.443 0.651 sum 12.820 11.910 -15.219 23.190 Atomic orbital electron populations 1.21611 0.89284 1.05236 1.05230 1.19915 0.96910 0.91777 0.90677 1.21820 0.95195 0.97916 0.99143 1.21904 0.94005 0.98985 0.91436 1.21553 1.01603 0.90285 0.99654 1.16818 0.89456 0.88775 0.98496 1.23777 0.95872 0.96643 0.93113 1.76067 1.17593 0.98846 1.23160 1.78781 1.01667 1.20610 1.03423 1.47697 1.26333 1.08914 1.21988 0.64602 1.74761 1.15081 0.99965 1.22859 1.30478 1.04659 1.20375 1.20223 1.01384 0.73577 0.73799 0.72618 1.93559 1.36160 1.85039 1.82032 1.93476 1.70453 1.62090 1.72144 1.55084 1.66467 1.36605 1.27052 1.19217 0.91199 0.91839 0.87288 1.21307 1.36724 1.00341 0.99367 0.93781 1.25836 0.95465 1.02797 0.94372 1.70034 1.42513 1.39246 1.06322 0.85935 0.80414 0.79521 0.78784 1.18517 1.20266 1.15411 0.88571 0.90819 0.87782 0.80715 0.79654 0.82396 0.74740 0.95208 0.94785 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 8.36 71.24 0.60 -3.70 16 2 C 0.01 0.24 5.87 -19.90 -0.12 0.13 16 3 C -0.12 -2.21 9.67 22.31 0.22 -2.00 16 4 C -0.05 -0.69 10.03 22.24 0.22 -0.47 16 5 C -0.11 -2.30 9.78 22.48 0.22 -2.08 16 6 C 0.07 2.08 5.87 -20.04 -0.12 1.96 16 7 C 0.19 6.10 5.86 137.38 0.81 6.91 16 8 N -0.28 -10.41 9.87 -52.19 -0.52 -10.93 16 9 N -0.05 -1.54 13.47 37.02 0.50 -1.04 16 10 N -0.20 -4.45 7.90 37.02 0.29 -4.16 16 11 H 0.49 5.23 8.96 -347.53 -3.12 2.12 16 12 N -0.27 -7.33 12.40 -52.14 -0.65 -7.98 16 13 C -0.67 -21.95 5.96 22.48 0.13 -21.81 16 14 S 2.69 107.04 4.81 -56.49 -0.27 106.77 16 15 O -0.98 -40.72 13.33 -128.00 -1.71 -42.43 16 16 O -0.99 -41.89 14.60 -128.00 -1.87 -43.76 16 17 N -1.09 -48.11 5.61 -190.80 -1.07 -49.18 16 18 C 0.23 11.00 4.64 85.63 0.40 11.39 16 19 C -0.54 -30.96 9.83 25.60 0.25 -30.71 16 20 H 0.04 2.79 7.90 -2.92 -0.02 2.77 16 21 C 0.01 0.81 5.47 84.65 0.46 1.27 16 22 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 23 Si 0.93 41.66 27.47 68.60 1.88 43.55 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.23 -9.16 6.54 99.48 0.65 -8.51 16 27 H 0.10 2.47 7.97 -2.39 -0.02 2.45 16 28 H 0.07 2.52 4.09 -2.39 -0.01 2.51 16 29 H 0.10 2.08 8.05 -2.39 -0.02 2.06 16 30 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.42 18.76 8.33 -96.73 -0.81 17.95 16 34 H 0.03 1.36 7.20 -2.38 -0.02 1.34 16 35 H 0.03 1.60 6.11 -2.39 -0.01 1.58 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -80.90 316.62 -2.83 -83.73 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -2.80 Total: 22.28 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 3.07 Total: -39.10 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -1.14 Total: -131.05 kcal Atomic # 8 Polarization: -82.61 SS G_CDS: -3.57 Total: -86.18 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.55 kcal Atomic # 16 Polarization: 107.04 SS G_CDS: -0.27 Total: 106.77 kcal Total: -80.90 -2.83 -83.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605895983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.639 kcal (2) G-P(sol) polarization free energy of solvation -80.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds