Wall clock time and date at job start Tue Mar 31 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47034 * 300.00083 * 3 2 1 6 6 H 1.48507 * 109.46936 * 60.00037 * 3 2 1 7 7 C 1.37872 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00177 * 184.58507 * 7 2 1 9 9 C 1.50704 * 120.00204 * 4.59551 * 7 2 1 10 10 C 1.52995 * 115.55085 * 93.58750 * 9 7 2 11 11 N 1.46502 * 109.47043 * 55.38809 * 10 9 7 12 12 C 1.34779 * 119.99874 * 185.02242 * 11 10 9 13 13 O 1.21509 * 119.99871 * 5.09294 * 12 11 10 14 14 C 1.48250 * 120.00101 * 185.08950 * 12 11 10 15 15 N 1.32777 * 119.58370 * 354.30167 * 14 12 11 16 16 C 1.31352 * 121.81452 * 179.97438 * 15 14 12 17 17 C 1.39797 * 120.76172 * 0.02562 * 16 15 14 18 18 C 1.48012 * 120.45594 * 180.02562 * 17 16 15 19 19 N 1.34776 * 120.00024 * 359.97438 * 18 17 16 20 20 O 1.21532 * 120.00222 * 180.02562 * 18 17 16 21 21 C 1.39772 * 119.09246 * 0.27011 * 17 16 15 22 22 C 1.38674 * 118.34356 * 359.46676 * 21 17 16 23 23 Cl 1.73600 * 120.42279 * 180.23505 * 22 21 17 24 24 C 1.52998 * 117.49717 * 239.25969 * 9 7 2 25 25 C 1.53005 * 117.49640 * 307.91887 * 9 7 2 26 26 H 0.96993 * 119.99743 * 5.00192 * 1 2 3 27 27 H 1.09004 * 109.47475 * 295.38813 * 10 9 7 28 28 H 1.09006 * 109.47064 * 175.38917 * 10 9 7 29 29 H 0.96995 * 120.00151 * 5.02633 * 11 10 9 30 30 H 1.08003 * 119.62304 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99672 * 0.02562 * 19 18 17 32 32 H 0.96994 * 120.00114 * 179.72426 * 19 18 17 33 33 H 1.08005 * 120.82785 * 179.70907 * 21 17 16 34 34 H 1.09001 * 117.49609 * 214.99577 * 24 9 7 35 35 H 1.08994 * 117.50336 * 0.02562 * 24 9 7 36 36 H 1.09001 * 117.49574 * 359.97438 * 25 9 7 37 37 H 1.08996 * 117.49825 * 144.97152 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0820 -1.1955 0.0753 9 6 1.2547 -2.4971 -0.1034 10 6 1.0967 -3.0564 -1.5187 11 7 2.4162 -3.1910 -2.1408 12 6 2.5179 -3.5709 -3.4299 13 8 1.5158 -3.7120 -4.1025 14 6 3.8523 -3.8165 -4.0273 15 7 4.9453 -3.5511 -3.3217 16 6 6.1490 -3.7524 -3.8074 17 6 6.3234 -4.2583 -5.0989 18 6 7.6829 -4.4831 -5.6393 19 7 8.7633 -4.1992 -4.8852 20 8 7.8250 -4.9229 -6.7633 21 6 5.1965 -4.5442 -5.8748 22 6 3.9438 -4.3228 -5.3228 23 17 2.5077 -4.6649 -6.2363 24 6 1.4221 -3.5015 1.0385 25 6 0.1078 -2.7327 0.8815 26 1 -0.4849 0.8368 -0.0732 27 1 0.4832 -2.3776 -2.1113 28 1 0.6157 -4.0335 -1.4717 29 1 3.2167 -3.0068 -1.6249 30 1 7.0139 -3.5237 -3.2025 31 1 8.6498 -3.8479 -3.9882 32 1 9.6541 -4.3503 -5.2379 33 1 5.2988 -4.9315 -6.8778 34 1 1.4196 -4.5608 0.7814 35 1 2.0742 -3.2197 1.8651 36 1 -0.1041 -1.9453 1.6048 37 1 -0.7595 -3.2858 0.5210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649786895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:43 Heat of formation + Delta-G solvation = -10.117374 kcal Electronic energy + Delta-G solvation = -24115.259597 eV Core-core repulsion = 20305.636257 eV Total energy + Delta-G solvation = -3809.623340 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12056 -39.59393 -38.48139 -36.78264 -36.56621 -34.35086 -33.60316 -32.73982 -31.93016 -31.43645 -27.08205 -25.65263 -24.77399 -24.02188 -21.68760 -21.12437 -20.32859 -19.50258 -18.71861 -17.95729 -17.52394 -16.54909 -16.06908 -15.80594 -15.57239 -14.99357 -14.91477 -14.84681 -14.57650 -14.07870 -13.86708 -13.63887 -13.39039 -12.89473 -12.64323 -12.14951 -11.97087 -11.59958 -11.31522 -11.02620 -10.92998 -10.90075 -10.53124 -10.25433 -10.23219 -10.17715 -10.17202 -9.54816 -9.30561 -9.23071 -9.11819 -8.45653 -8.34908 -8.07345 -6.08840 -4.18135 -0.11645 0.64458 1.87053 2.17780 2.93079 2.98452 3.24499 3.33481 3.34551 3.35865 3.67756 3.87755 4.23647 4.31921 4.34981 4.51807 4.61405 4.88728 5.17311 5.32863 5.37254 5.53008 5.84878 6.01807 6.25987 6.31626 6.44021 6.49029 6.70578 6.76416 6.79496 7.11727 7.14167 7.25554 7.36324 7.61340 7.70683 7.79968 8.16781 8.32224 8.67430 8.83814 9.49168 10.98076 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.003613 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.067004 B = 7747.219228 C = 8672.725907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.017 3.983 10 C 0.160 3.840 11 N -0.672 5.672 12 C 0.547 3.453 13 O -0.522 6.522 14 C 0.129 3.871 15 N -0.440 5.440 16 C 0.136 3.864 17 C -0.173 4.173 18 C 0.574 3.426 19 N -0.846 5.846 20 O -0.532 6.532 21 C -0.015 4.015 22 C -0.052 4.052 23 Cl -0.004 7.004 24 C -0.213 4.213 25 C -0.134 4.134 26 H 0.260 0.740 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.412 0.588 30 H 0.171 0.829 31 H 0.404 0.596 32 H 0.409 0.591 33 H 0.163 0.837 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 -8.633 -7.571 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.016 3.984 10 C 0.037 3.963 11 N -0.321 5.321 12 C 0.328 3.672 13 O -0.398 6.398 14 C -0.010 4.010 15 N -0.150 5.150 16 C -0.025 4.025 17 C -0.179 4.179 18 C 0.358 3.642 19 N -0.410 5.410 20 O -0.409 6.409 21 C -0.042 4.042 22 C -0.083 4.083 23 Cl 0.026 6.974 24 C -0.251 4.251 25 C -0.172 4.172 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.248 0.752 30 H 0.188 0.812 31 H 0.234 0.766 32 H 0.241 0.759 33 H 0.181 0.819 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.996 -8.588 -7.913 17.471 hybrid contribution 1.197 0.893 -0.343 1.533 sum 14.193 -7.694 -8.256 18.133 Atomic orbital electron populations 1.70014 1.05834 1.26789 1.48477 1.24968 0.94810 0.98946 0.94264 0.86617 0.80267 0.83999 0.77608 1.19661 1.20984 1.21052 1.20360 0.92597 0.88572 1.51745 0.92095 1.19054 0.99888 0.93995 0.85458 1.21128 0.81985 0.98167 0.94976 1.45838 1.11854 1.64116 1.10266 1.17716 0.86221 0.79979 0.83250 1.90859 1.35869 1.52439 1.60679 1.21708 0.94584 0.94541 0.90163 1.67829 0.97899 1.14184 1.35123 1.23073 0.95412 0.92361 0.91694 1.21019 0.94313 1.05790 0.96738 1.17917 0.84343 0.77067 0.84879 1.43700 1.08898 1.68736 1.19713 1.90847 1.86649 1.44638 1.18784 1.21670 0.88776 0.93098 1.00642 1.21925 0.90622 1.01949 0.93791 1.98445 1.34724 1.92526 1.71731 1.23104 1.02666 0.95404 1.03909 1.22441 0.89976 1.00746 1.03991 0.92958 0.91047 0.94006 0.75150 0.81215 0.76633 0.75902 0.81942 0.91853 0.90366 0.88836 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.85 11.90 55.43 0.66 -23.20 16 2 C 0.07 1.93 5.41 -17.82 -0.10 1.84 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -12.50 8.31 -34.44 -0.29 -12.78 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.02 0.38 1.73 -155.66 -0.27 0.12 16 10 C 0.16 3.48 5.59 -4.04 -0.02 3.45 16 11 N -0.67 -13.03 5.34 -61.12 -0.33 -13.36 16 12 C 0.55 10.21 7.79 -12.14 -0.09 10.12 16 13 O -0.52 -10.84 13.93 5.36 0.07 -10.77 16 14 C 0.13 1.99 6.75 -82.91 -0.56 1.43 16 15 N -0.44 -5.85 9.53 -9.46 -0.09 -5.94 16 16 C 0.14 1.28 10.71 -17.17 -0.18 1.10 16 17 C -0.17 -1.70 5.89 -104.73 -0.62 -2.32 16 18 C 0.57 5.28 8.06 -12.25 -0.10 5.18 16 19 N -0.85 -4.07 8.83 30.57 0.27 -3.80 16 20 O -0.53 -6.87 17.25 5.34 0.09 -6.78 16 21 C -0.01 -0.17 9.51 -38.85 -0.37 -0.54 16 22 C -0.05 -0.72 6.36 -38.99 -0.25 -0.97 16 23 Cl 0.00 -0.05 26.02 -51.86 -1.35 -1.40 16 24 C -0.21 -4.38 9.93 -26.69 -0.27 -4.65 16 25 C -0.13 -3.02 8.88 -26.69 -0.24 -3.26 16 26 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.07 1.75 8.10 -51.93 -0.42 1.33 16 28 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.41 7.67 7.49 -40.82 -0.31 7.37 16 30 H 0.17 0.84 6.41 -52.48 -0.34 0.51 16 31 H 0.40 0.87 6.89 -40.82 -0.28 0.59 16 32 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 33 H 0.16 1.65 7.73 -52.48 -0.41 1.25 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 2.31 7.63 -51.93 -0.40 1.91 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -31.53 340.41 -7.65 -39.18 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.74 Total: 6.87 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.35 Total: -1.28 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.51 Total: -46.28 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.35 Total: -1.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.53 -7.65 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649786895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.065 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds