Wall clock time and date at job start Tue Mar 31 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47034 * 300.00083 * 3 2 1 6 6 H 1.48507 * 109.46936 * 60.00037 * 3 2 1 7 7 C 1.37872 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00177 * 184.58507 * 7 2 1 9 9 C 1.50704 * 120.00204 * 4.59551 * 7 2 1 10 10 C 1.52995 * 115.55085 * 93.58750 * 9 7 2 11 11 N 1.46502 * 109.47043 * 55.38809 * 10 9 7 12 12 C 1.34779 * 119.99874 * 185.02242 * 11 10 9 13 13 O 1.21509 * 119.99871 * 5.09294 * 12 11 10 14 14 C 1.48250 * 120.00101 * 185.08950 * 12 11 10 15 15 N 1.32777 * 119.58370 * 354.30167 * 14 12 11 16 16 C 1.31352 * 121.81452 * 179.97438 * 15 14 12 17 17 C 1.39797 * 120.76172 * 0.02562 * 16 15 14 18 18 C 1.48012 * 120.45594 * 180.02562 * 17 16 15 19 19 N 1.34776 * 120.00024 * 359.97438 * 18 17 16 20 20 O 1.21532 * 120.00222 * 180.02562 * 18 17 16 21 21 C 1.39772 * 119.09246 * 0.27011 * 17 16 15 22 22 C 1.38674 * 118.34356 * 359.46676 * 21 17 16 23 23 Cl 1.73600 * 120.42279 * 180.23505 * 22 21 17 24 24 C 1.52998 * 117.49717 * 239.25969 * 9 7 2 25 25 C 1.53005 * 117.49640 * 307.91887 * 9 7 2 26 26 H 0.96993 * 119.99743 * 5.00192 * 1 2 3 27 27 H 1.09004 * 109.47475 * 295.38813 * 10 9 7 28 28 H 1.09006 * 109.47064 * 175.38917 * 10 9 7 29 29 H 0.96995 * 120.00151 * 5.02633 * 11 10 9 30 30 H 1.08003 * 119.62304 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99672 * 0.02562 * 19 18 17 32 32 H 0.96994 * 120.00114 * 179.72426 * 19 18 17 33 33 H 1.08005 * 120.82785 * 179.70907 * 21 17 16 34 34 H 1.09001 * 117.49609 * 214.99577 * 24 9 7 35 35 H 1.08994 * 117.50336 * 0.02562 * 24 9 7 36 36 H 1.09001 * 117.49574 * 359.97438 * 25 9 7 37 37 H 1.08996 * 117.49825 * 144.97152 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0820 -1.1955 0.0753 9 6 1.2547 -2.4971 -0.1034 10 6 1.0967 -3.0564 -1.5187 11 7 2.4162 -3.1910 -2.1408 12 6 2.5179 -3.5709 -3.4299 13 8 1.5158 -3.7120 -4.1025 14 6 3.8523 -3.8165 -4.0273 15 7 4.9453 -3.5511 -3.3217 16 6 6.1490 -3.7524 -3.8074 17 6 6.3234 -4.2583 -5.0989 18 6 7.6829 -4.4831 -5.6393 19 7 8.7633 -4.1992 -4.8852 20 8 7.8250 -4.9229 -6.7633 21 6 5.1965 -4.5442 -5.8748 22 6 3.9438 -4.3228 -5.3228 23 17 2.5077 -4.6649 -6.2363 24 6 1.4221 -3.5015 1.0385 25 6 0.1078 -2.7327 0.8815 26 1 -0.4849 0.8368 -0.0732 27 1 0.4832 -2.3776 -2.1113 28 1 0.6157 -4.0335 -1.4717 29 1 3.2167 -3.0068 -1.6249 30 1 7.0139 -3.5237 -3.2025 31 1 8.6498 -3.8479 -3.9882 32 1 9.6541 -4.3503 -5.2379 33 1 5.2988 -4.9315 -6.8778 34 1 1.4196 -4.5608 0.7814 35 1 2.0742 -3.2197 1.8651 36 1 -0.1041 -1.9453 1.6048 37 1 -0.7595 -3.2858 0.5210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649786895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:43 Heat of formation + Delta-G solvation = -33.736391 kcal Electronic energy + Delta-G solvation = -24116.283795 eV Core-core repulsion = 20305.636257 eV Total energy + Delta-G solvation = -3810.647538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08941 -40.67021 -39.67749 -38.42168 -37.72014 -35.12989 -34.99061 -33.93815 -33.72500 -32.40052 -28.56978 -27.42244 -26.10764 -24.92562 -22.92469 -22.52536 -21.60496 -21.26327 -19.57620 -19.03360 -18.60181 -17.84686 -17.34288 -16.74715 -16.73655 -16.58205 -16.34682 -15.99730 -15.93319 -15.36603 -15.07569 -14.78525 -14.52692 -14.36555 -14.09231 -13.73028 -13.40560 -13.19767 -12.90182 -12.81897 -12.52947 -12.31529 -11.95340 -11.77415 -11.33897 -11.24766 -11.16235 -10.99336 -10.77879 -10.55736 -10.36770 -10.32143 -10.04412 -9.76452 -8.06986 -6.19956 -1.09884 -0.26284 0.83713 1.22872 1.42039 1.46050 1.54799 1.94291 2.01587 2.29109 2.44945 2.56730 2.90301 3.20494 3.34599 3.44718 3.56426 3.64030 3.73836 3.89817 4.27796 4.47372 4.57014 4.59429 4.68839 4.73527 4.95065 5.01705 5.07732 5.34841 5.53172 5.61721 5.77297 5.78979 5.81280 6.24076 6.29679 6.39891 6.69732 6.87726 7.15613 7.20564 7.49291 8.99574 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.003613 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.067004 B = 7747.219228 C = 8672.725907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.497 4.497 8 H 0.064 0.936 9 C -0.004 4.004 10 C 0.175 3.825 11 N -0.673 5.673 12 C 0.544 3.456 13 O -0.550 6.550 14 C 0.108 3.892 15 N -0.453 5.453 16 C 0.150 3.850 17 C -0.157 4.157 18 C 0.576 3.424 19 N -0.818 5.818 20 O -0.572 6.572 21 C -0.013 4.013 22 C -0.057 4.057 23 Cl -0.020 7.020 24 C -0.181 4.181 25 C -0.145 4.145 26 H 0.257 0.743 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.416 0.584 30 H 0.221 0.779 31 H 0.420 0.580 32 H 0.420 0.580 33 H 0.172 0.828 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.714 -9.104 -7.198 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.183 1.183 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.535 4.535 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.052 3.948 11 N -0.322 5.322 12 C 0.328 3.672 13 O -0.429 6.429 14 C -0.030 4.030 15 N -0.164 5.164 16 C -0.011 4.011 17 C -0.163 4.163 18 C 0.360 3.640 19 N -0.384 5.384 20 O -0.452 6.452 21 C -0.040 4.040 22 C -0.088 4.088 23 Cl 0.009 6.991 24 C -0.218 4.218 25 C -0.183 4.183 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.254 0.746 30 H 0.237 0.763 31 H 0.253 0.747 32 H 0.254 0.746 33 H 0.190 0.810 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.481 -9.053 -7.496 20.243 hybrid contribution 0.285 1.001 -0.461 1.139 sum 16.766 -8.052 -7.958 20.230 Atomic orbital electron populations 1.70136 1.07102 1.27115 1.50120 1.25658 0.95466 1.01909 0.94511 0.85726 0.79801 0.80473 0.76974 1.18277 1.21717 1.21129 1.20664 0.92866 0.89560 1.50410 0.91815 1.19109 1.00368 0.94467 0.86525 1.20740 0.82866 0.97420 0.93818 1.45704 1.10917 1.64805 1.10785 1.18195 0.87561 0.78787 0.82650 1.90834 1.37509 1.53359 1.61175 1.21138 0.93672 0.97294 0.90894 1.67806 0.98490 1.14773 1.35336 1.23818 0.95367 0.90212 0.91737 1.21208 0.94457 1.04050 0.96594 1.17781 0.84652 0.77015 0.84570 1.43517 1.08320 1.66635 1.19904 1.90850 1.87008 1.46784 1.20578 1.21811 0.88276 0.92682 1.01239 1.21934 0.90911 1.02626 0.93320 1.98436 1.35939 1.92698 1.71992 1.23079 1.00427 0.96135 1.02192 1.22332 0.91158 1.00989 1.03809 0.93377 0.94851 0.93228 0.74630 0.76270 0.74682 0.74602 0.81029 0.89281 0.89938 0.91426 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.63 11.90 21.45 0.26 -50.37 16 2 C 0.02 1.31 5.41 84.65 0.46 1.77 16 3 Si 0.94 41.82 29.54 68.60 2.03 43.85 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.50 -24.98 8.31 25.60 0.21 -24.77 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 9 C 0.00 -0.18 1.73 -52.93 -0.09 -0.28 16 10 C 0.18 7.72 5.59 86.38 0.48 8.21 16 11 N -0.67 -26.06 5.34 -465.57 -2.49 -28.55 16 12 C 0.54 20.51 7.79 86.91 0.68 21.18 16 13 O -0.55 -23.53 13.93 -3.74 -0.05 -23.58 16 14 C 0.11 3.23 6.75 41.94 0.28 3.51 16 15 N -0.45 -10.99 9.53 -183.86 -1.75 -12.74 16 16 C 0.15 2.25 10.71 85.14 0.91 3.16 16 17 C -0.16 -2.61 5.89 -19.94 -0.12 -2.73 16 18 C 0.58 8.67 8.06 86.84 0.70 9.37 16 19 N -0.82 -4.24 8.83 -175.49 -1.55 -5.79 16 20 O -0.57 -13.47 17.25 -3.82 -0.07 -13.54 16 21 C -0.01 -0.28 9.51 22.74 0.22 -0.06 16 22 C -0.06 -1.54 6.36 22.65 0.14 -1.40 16 23 Cl -0.02 -0.59 26.02 -2.72 -0.07 -0.66 16 24 C -0.18 -7.14 9.93 30.62 0.30 -6.84 16 25 C -0.14 -6.58 8.88 30.62 0.27 -6.30 16 26 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 27 H 0.03 1.70 8.10 -2.38 -0.02 1.68 16 28 H 0.05 2.07 8.10 -2.38 -0.02 2.05 16 29 H 0.42 15.16 7.49 -92.71 -0.69 14.47 16 30 H 0.22 0.89 6.41 -2.91 -0.02 0.87 16 31 H 0.42 -0.49 6.89 -92.71 -0.64 -1.13 16 32 H 0.42 1.16 8.93 -92.71 -0.83 0.34 16 33 H 0.17 3.28 7.73 -2.91 -0.02 3.26 16 34 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.07 3.41 7.63 -2.39 -0.02 3.39 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -70.36 340.41 -0.23 -70.59 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.99 Total: 15.96 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.45 Total: 4.82 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -5.53 Total: -97.46 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.12 Total: -37.12 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.07 Total: -0.66 kcal Total: -70.36 -0.23 -70.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649786895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.858 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds