Wall clock time and date at job start Tue Mar 31 2020 13:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99927 * 2 1 4 4 H 1.48505 * 109.46969 * 269.99890 * 3 2 1 5 5 H 1.48496 * 109.47429 * 29.99643 * 3 2 1 6 6 H 1.48503 * 109.47001 * 149.99921 * 3 2 1 7 7 C 1.39934 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 162.31170 * 7 2 1 9 9 C 1.41434 * 120.00399 * 342.30647 * 7 2 1 10 10 C 1.40787 * 120.18115 * 155.18507 * 9 7 2 11 11 C 1.37706 * 120.04369 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41356 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35804 * 0.02562 * 12 11 10 14 14 C 1.47881 * 120.02774 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00390 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00014 * 359.97438 * 14 13 12 17 17 S 1.65603 * 120.00285 * 180.02562 * 16 14 13 18 18 O 1.42097 * 104.27748 * 181.07404 * 17 16 14 19 19 O 1.42109 * 104.27512 * 308.92938 * 17 16 14 20 20 C 1.81399 * 104.44962 * 64.99688 * 17 16 14 21 21 C 1.53002 * 109.47259 * 180.02562 * 20 17 16 22 22 C 1.53779 * 113.61739 * 274.14298 * 21 20 17 23 23 C 1.53950 * 87.02105 * 220.04646 * 22 21 20 24 24 C 1.53774 * 113.61882 * 176.53015 * 21 20 17 25 25 C 1.39031 * 119.94814 * 0.02562 * 13 12 11 26 26 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.97666 * 0.03467 * 10 9 7 28 28 H 1.07997 * 119.79224 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.82255 * 180.02562 * 12 11 10 30 30 H 0.97003 * 120.00172 * 0.02562 * 16 14 13 31 31 H 1.08996 * 109.47368 * 300.00618 * 20 17 16 32 32 H 1.09006 * 109.46786 * 60.00892 * 20 17 16 33 33 H 1.09000 * 112.84440 * 45.33628 * 21 20 17 34 34 H 1.09002 * 113.61276 * 334.56431 * 22 21 20 35 35 H 1.08996 * 113.61752 * 105.46214 * 22 21 20 36 36 H 1.08997 * 113.53574 * 270.81079 * 23 22 21 37 37 H 1.08996 * 113.66755 * 139.92929 * 23 22 21 38 38 H 1.08993 * 113.61739 * 254.53310 * 24 21 20 39 39 H 1.09003 * 113.61152 * 25.35203 * 24 21 20 40 40 H 1.07998 * 120.20520 * 180.25560 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0497 -1.2342 -0.2836 9 6 1.3510 -2.4076 0.3733 10 6 1.8218 -3.6493 -0.0943 11 6 1.1797 -4.8117 0.2700 12 6 0.0706 -4.7699 1.0962 13 6 -0.4118 -3.5456 1.5707 14 6 -1.5974 -3.5095 2.4538 15 8 -2.0159 -2.4454 2.8662 16 7 -2.2140 -4.6564 2.8013 17 16 -3.5421 -4.6159 3.7898 18 8 -3.8977 -5.9817 3.9551 19 8 -3.1306 -3.8267 4.8976 20 6 -4.8020 -3.7430 2.8195 21 6 -6.0925 -3.6395 3.6349 22 6 -7.0037 -4.8714 3.5051 23 6 -8.1896 -3.8904 3.4670 24 6 -7.2023 -2.8393 2.9329 25 6 0.2244 -2.3627 1.2114 26 1 -0.4850 0.8400 -0.0004 27 1 2.6873 -3.6901 -0.7391 28 1 1.5446 -5.7620 -0.0908 29 1 -0.4255 -5.6875 1.3763 30 1 -1.8799 -5.5056 2.4725 31 1 -4.4448 -2.7423 2.5767 32 1 -4.9968 -4.2927 1.8986 33 1 -5.9181 -3.3320 4.6660 34 1 -6.8630 -5.4226 2.5753 35 1 -6.9961 -5.5148 4.3849 36 1 -8.5895 -3.6525 4.4527 37 1 -8.9632 -4.1667 2.7506 38 1 -7.3548 -1.8445 3.3513 39 1 -7.1152 -2.8327 1.8463 40 1 -0.1420 -1.4155 1.5787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178797607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:06 Heat of formation + Delta-G solvation = -79.035074 kcal Electronic energy + Delta-G solvation = -24847.694841 eV Core-core repulsion = 21140.667055 eV Total energy + Delta-G solvation = -3707.027786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.70297 -39.11165 -37.34309 -36.94538 -35.95554 -34.28464 -33.66852 -30.62329 -30.24179 -29.60725 -25.88466 -25.49501 -23.86186 -23.39224 -21.17573 -20.34215 -19.79185 -19.40836 -18.22248 -17.64175 -16.74719 -16.35665 -15.81617 -15.44056 -15.14576 -14.98765 -14.75689 -14.56535 -14.30834 -13.71779 -13.44121 -13.02699 -12.70472 -12.69923 -12.61833 -12.40607 -12.13866 -12.02712 -11.93925 -11.79711 -11.33835 -11.30637 -11.17672 -10.90404 -10.89731 -10.66497 -10.59445 -10.54693 -10.33344 -10.08725 -9.85248 -9.47869 -9.32388 -7.85106 -7.67333 -6.93271 -4.53776 0.14947 1.80235 2.53849 2.68417 3.01284 3.03207 3.08447 3.36344 3.71518 3.83414 4.09488 4.22599 4.34898 4.38649 4.48275 4.57164 4.83450 4.90279 5.09890 5.32360 5.39721 5.44366 5.47728 5.50440 5.63264 5.67524 5.76195 5.90454 5.92505 6.12210 6.17786 6.53189 6.74140 6.84597 7.00166 7.07844 7.20206 7.53738 7.61827 7.80600 7.99110 8.14034 8.34869 8.66910 8.68755 10.01882 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.003481 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.152325 B = 8040.862212 C = 9117.226391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.206 4.206 11 C -0.095 4.095 12 C -0.217 4.217 13 C -0.135 4.135 14 C 0.584 3.416 15 O -0.504 6.504 16 N -1.055 6.055 17 S 2.593 3.407 18 O -0.953 6.953 19 O -0.933 6.933 20 C -0.609 4.609 21 C -0.106 4.106 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.085 4.085 26 H 0.286 0.714 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.431 0.569 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -6.312 2.555 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.226 4.226 11 C -0.113 4.113 12 C -0.237 4.237 13 C -0.140 4.140 14 C 0.376 3.624 15 O -0.378 6.378 16 N -0.821 5.821 17 S 2.688 3.312 18 O -0.944 6.944 19 O -0.923 6.923 20 C -0.740 4.740 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.179 4.179 24 C -0.163 4.163 25 C -0.105 4.105 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.269 0.731 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.935 -5.720 3.713 13.746 hybrid contribution 0.403 0.531 -0.921 1.137 sum -11.531 -5.189 2.792 12.950 Atomic orbital electron populations 1.69762 1.07657 1.30004 1.33356 1.25982 0.94814 1.01709 0.92126 0.86248 0.80668 0.80254 0.79294 1.19371 1.19857 1.18282 1.19611 0.98250 0.90952 1.39616 0.89866 1.17602 0.91104 0.92605 0.89242 1.21158 1.03381 0.92712 1.05301 1.20453 0.95801 0.96953 0.98106 1.20351 1.01514 0.94516 1.07293 1.19312 0.96614 0.95840 1.02279 1.18870 0.83602 0.81460 0.78461 1.90852 1.65358 1.28735 1.52900 1.55004 1.45401 1.17015 1.64639 1.05651 0.75166 0.74991 0.75352 1.93606 1.83379 1.32312 1.85069 1.93642 1.79147 1.71670 1.47867 1.30470 1.13157 1.16568 1.13785 1.22318 0.91156 0.99666 0.99463 1.23198 0.95787 0.95873 1.03440 1.22842 0.96546 0.96779 1.01764 1.22889 0.94359 0.98248 1.00806 1.21688 0.96281 0.96264 0.96257 0.90287 0.88323 0.88515 0.88869 0.73112 0.83342 0.84784 0.87835 0.89205 0.90463 0.89879 0.90994 0.90796 0.89442 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.97 55.55 0.61 -18.98 16 2 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.46 -11.38 9.05 -37.73 -0.34 -11.72 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.10 2.43 5.57 -106.87 -0.60 1.84 16 10 C -0.21 -4.60 9.78 -38.81 -0.38 -4.98 16 11 C -0.09 -1.89 10.01 -39.73 -0.40 -2.29 16 12 C -0.22 -4.26 9.55 -38.92 -0.37 -4.63 16 13 C -0.14 -2.99 5.87 -105.04 -0.62 -3.61 16 14 C 0.58 11.82 7.51 -12.31 -0.09 11.72 16 15 O -0.50 -11.39 14.43 -11.81 -0.17 -11.56 16 16 N -1.05 -16.71 5.55 30.54 0.17 -16.54 16 17 S 2.59 39.07 5.11 -107.50 -0.55 38.52 16 18 O -0.95 -14.74 18.08 -57.54 -1.04 -15.78 16 19 O -0.93 -17.87 17.04 -64.79 -1.10 -18.97 16 20 C -0.61 -7.43 5.71 37.16 0.21 -7.21 16 21 C -0.11 -1.15 3.64 -89.81 -0.33 -1.48 16 22 C -0.15 -1.37 7.65 -25.83 -0.20 -1.57 16 23 C -0.14 -1.14 8.09 -25.83 -0.21 -1.35 16 24 C -0.12 -1.15 7.65 -25.92 -0.20 -1.35 16 25 C -0.08 -2.13 8.23 -38.44 -0.32 -2.44 16 26 H 0.29 6.55 8.30 -40.82 -0.34 6.22 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.47 6.38 -52.49 -0.33 1.13 16 30 H 0.43 5.62 6.81 -34.47 -0.23 5.39 16 31 H 0.15 1.99 7.19 -51.93 -0.37 1.61 16 32 H 0.13 1.29 7.88 -51.92 -0.41 0.89 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.14 3.67 5.77 -52.49 -0.30 3.36 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -31.01 348.58 -10.78 -41.79 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.99 Total: 10.72 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -3.92 Total: -27.39 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.78 Total: -35.52 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -2.31 Total: -46.32 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 39.07 SS G_CDS: -0.55 Total: 38.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.01 -10.78 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178797607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.247 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds